Wall clock time and date at job start Tue Mar 31 2020 05:11:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36939 * 120.00077 * 2 1 4 4 H 1.07996 * 120.00045 * 200.61758 * 3 2 1 5 5 C 1.38807 * 119.99799 * 20.61639 * 3 2 1 6 6 N 1.31617 * 120.00247 * 14.76144 * 5 3 2 7 7 Si 1.86804 * 120.00034 * 194.76236 * 5 3 2 8 8 H 1.48496 * 109.47399 * 85.00158 * 7 5 3 9 9 H 1.48502 * 109.47413 * 205.01048 * 7 5 3 10 10 H 1.48506 * 109.46796 * 325.00399 * 7 5 3 11 11 S 1.65596 * 120.00001 * 180.02562 * 2 1 3 12 12 O 1.42102 * 106.40292 * 156.45994 * 11 2 1 13 13 O 1.42101 * 106.40447 * 23.53980 * 11 2 1 14 14 C 1.76201 * 107.22130 * 269.99744 * 11 2 1 15 15 C 1.38794 * 119.96208 * 89.99527 * 14 11 2 16 16 C 1.36177 * 120.77568 * 180.02562 * 15 14 11 17 17 C 1.40966 * 120.42755 * 0.25761 * 16 15 14 18 18 N 1.34666 * 129.69431 * 179.72524 * 17 16 15 19 19 C 1.27926 * 117.85093 * 179.97438 * 18 17 16 20 20 C 1.50701 * 124.24218 * 179.97438 * 19 18 17 21 21 C 1.52997 * 109.46803 * 60.02509 * 20 19 18 22 22 C 1.52999 * 109.47357 * 180.02562 * 20 19 18 23 23 C 1.53001 * 109.46975 * 300.02847 * 20 19 18 24 24 S 1.70660 * 111.52117 * 359.50121 * 19 18 17 25 25 C 1.39920 * 118.50448 * 359.45666 * 17 16 15 26 26 C 1.37651 * 119.96981 * 269.98069 * 14 11 2 27 27 H 1.08994 * 109.46881 * 275.00365 * 1 2 3 28 28 H 1.08994 * 109.47062 * 34.99975 * 1 2 3 29 29 H 1.08997 * 109.46898 * 154.99861 * 1 2 3 30 30 H 0.97007 * 119.99991 * 179.97438 * 6 5 3 31 31 H 1.08001 * 119.61369 * 359.97438 * 15 14 11 32 32 H 1.07999 * 119.79027 * 179.97438 * 16 15 14 33 33 H 1.08999 * 109.47321 * 60.00120 * 21 20 19 34 34 H 1.09005 * 109.47184 * 180.02562 * 21 20 19 35 35 H 1.09003 * 109.47316 * 300.00057 * 21 20 19 36 36 H 1.09000 * 109.46932 * 59.99899 * 22 20 19 37 37 H 1.08996 * 109.46711 * 179.97438 * 22 20 19 38 38 H 1.08999 * 109.46752 * 299.99871 * 22 20 19 39 39 H 1.09007 * 109.47289 * 59.99320 * 23 20 19 40 40 H 1.08996 * 109.47394 * 179.97438 * 23 20 19 41 41 H 1.09000 * 109.47184 * 300.00021 * 23 20 19 42 42 H 1.08000 * 120.02105 * 0.04276 * 26 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1778 1.2159 -0.3293 5 6 1.5223 2.3495 0.4233 6 7 0.3895 2.2813 1.0898 7 14 2.2858 4.0123 0.0469 8 1 1.8715 4.4517 -1.3097 9 1 1.8276 5.0061 1.0507 10 1 3.7657 3.9010 0.1006 11 16 2.2930 -1.4341 -0.0006 12 8 3.5759 -1.1565 -0.5450 13 8 1.4113 -2.4063 -0.5455 14 6 2.5539 -1.8866 1.6822 15 6 1.6151 -2.6657 2.3440 16 6 1.7997 -3.0247 3.6446 17 6 2.9489 -2.6049 4.3448 18 7 3.3145 -2.8426 5.6189 19 6 4.4204 -2.3451 6.0261 20 6 4.9667 -2.5196 7.4198 21 6 5.1750 -4.0086 7.7031 22 6 6.3039 -1.7858 7.5390 23 6 3.9756 -1.9416 8.4320 24 16 5.2061 -1.4698 4.7895 25 6 3.8943 -1.8248 3.6699 26 6 3.6886 -1.4673 2.3390 27 1 -0.3633 0.0896 1.0237 28 1 -0.3633 0.8418 -0.5894 29 1 -0.3633 -0.9314 -0.4343 30 1 -0.0488 3.0945 1.3859 31 1 0.7274 -2.9905 1.8217 32 1 1.0588 -3.6310 4.1443 33 1 5.8810 -4.4204 6.9819 34 1 5.5697 -4.1349 8.7113 35 1 4.2223 -4.5314 7.6181 36 1 6.1555 -0.7250 7.3371 37 1 6.6987 -1.9117 8.5472 38 1 7.0099 -2.1976 6.8179 39 1 3.0229 -2.4643 8.3470 40 1 4.3704 -2.0681 9.4400 41 1 3.8272 -0.8808 8.2301 42 1 4.4183 -0.8606 1.8234 RHF calculation, no. of doubly occupied orbitals= 60 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095939307.mol2 42 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:11:57 Heat of formation + Delta-G solvation = -36.896764 kcal Electronic energy + Delta-G solvation = -27042.333184 eV Core-core repulsion = 23240.239801 eV Total energy + Delta-G solvation = -3802.093383 eV No. of doubly occupied orbitals = 60 Molecular weight (most abundant/longest-lived isotopes) = 354.086 amu Computer time = 1.54 seconds Orbital eigenvalues (eV) -41.59029 -39.07067 -37.85781 -37.54247 -36.72668 -36.43644 -33.37965 -32.31531 -30.75884 -28.38686 -28.32847 -28.23438 -26.28009 -25.39916 -24.38538 -23.02847 -20.63559 -20.32579 -19.64540 -19.01970 -18.54355 -17.96956 -17.22118 -16.84633 -16.46140 -16.22415 -16.11712 -15.49770 -15.16383 -15.08314 -14.93353 -14.82612 -14.71324 -14.30221 -13.74374 -13.65614 -13.46923 -13.23712 -13.12300 -13.04413 -12.83026 -12.76425 -12.67793 -12.65515 -12.64663 -12.36959 -12.16036 -12.09833 -11.99482 -11.93606 -11.90121 -11.70240 -11.30728 -11.13742 -10.75729 -10.06514 -9.90983 -9.28138 -8.41134 -5.96130 -0.96711 -0.16903 -0.01473 0.08046 0.55090 1.00049 1.49401 1.53303 1.61252 2.21304 2.36628 2.59239 2.66600 2.90263 3.19588 3.35200 3.59817 3.72550 3.84248 3.87801 4.07672 4.12485 4.25326 4.30976 4.55617 4.58850 4.66384 4.70243 4.80169 4.84957 4.88263 4.91586 4.92372 5.00417 5.02081 5.07683 5.19729 5.22627 5.31301 5.32868 5.35421 5.53074 5.58027 6.37084 6.40534 6.75355 7.20466 8.55713 Molecular weight = 354.09amu Principal moments of inertia in cm(-1) A = 0.012990 B = 0.003509 C = 0.003112 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2154.983570 B = 7978.376473 C = 8996.633098 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.126 3.874 2 N -0.815 5.815 3 C -0.277 4.277 4 H 0.110 0.890 5 C 0.002 3.998 6 N -0.855 5.855 7 Si 0.987 3.013 8 H -0.265 1.265 9 H -0.274 1.274 10 H -0.262 1.262 11 S 2.554 3.446 12 O -1.007 7.007 13 O -1.009 7.009 14 C -0.659 4.659 15 C -0.034 4.034 16 C -0.093 4.093 17 C 0.102 3.898 18 N -0.488 5.488 19 C 0.112 3.888 20 C 0.004 3.996 21 C -0.131 4.131 22 C -0.155 4.155 23 C -0.132 4.132 24 S 0.137 5.863 25 C -0.239 4.239 26 C 0.020 3.980 27 H 0.048 0.952 28 H 0.069 0.931 29 H 0.060 0.940 30 H 0.281 0.719 31 H 0.154 0.846 32 H 0.160 0.840 33 H 0.054 0.946 34 H 0.097 0.903 35 H 0.052 0.948 36 H 0.063 0.937 37 H 0.105 0.895 38 H 0.065 0.935 39 H 0.052 0.948 40 H 0.098 0.902 41 H 0.051 0.949 42 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.189 -4.545 15.054 17.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.020 4.020 2 N -0.640 5.640 3 C -0.424 4.424 4 H 0.128 0.872 5 C -0.209 4.209 6 N -0.494 5.494 7 Si 0.809 3.191 8 H -0.190 1.190 9 H -0.199 1.199 10 H -0.186 1.186 11 S 2.653 3.347 12 O -0.997 6.997 13 O -0.999 6.999 14 C -0.743 4.743 15 C -0.055 4.055 16 C -0.115 4.115 17 C -0.019 4.019 18 N -0.202 5.202 19 C -0.172 4.172 20 C 0.000 4.000 21 C -0.190 4.190 22 C -0.213 4.213 23 C -0.191 4.191 24 S 0.396 5.604 25 C -0.357 4.357 26 C -0.003 4.003 27 H 0.066 0.934 28 H 0.088 0.912 29 H 0.078 0.922 30 H 0.091 0.909 31 H 0.172 0.828 32 H 0.178 0.822 33 H 0.073 0.927 34 H 0.116 0.884 35 H 0.071 0.929 36 H 0.082 0.918 37 H 0.124 0.876 38 H 0.084 0.916 39 H 0.071 0.929 40 H 0.116 0.884 41 H 0.070 0.930 42 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 7.973 -4.981 14.790 17.525 hybrid contribution -0.874 0.429 -0.107 0.980 sum 7.098 -4.553 14.683 16.932 Atomic orbital electron populations 1.21311 0.78434 1.00510 1.01761 1.54113 1.13733 1.18534 1.77616 1.20161 1.00527 0.83744 1.37965 0.87221 1.26436 0.96813 1.03540 0.94086 1.70173 1.16813 1.31195 1.31252 0.85022 0.79164 0.76241 0.78668 1.18977 1.19936 1.18561 1.10278 0.73084 0.74222 0.77068 1.93315 1.42549 1.85062 1.78783 1.93317 1.65520 1.61979 1.79101 1.32288 1.01601 1.09437 1.30927 1.20577 0.97776 0.93205 0.93986 1.20655 0.95827 1.01277 0.93721 1.19570 0.96460 0.97124 0.88729 1.66173 1.16599 1.24439 1.12971 1.27761 0.92528 0.95021 1.01932 1.19677 0.96703 0.99230 0.84427 1.21852 1.02153 0.91499 1.03468 1.22080 0.93910 1.00165 1.05143 1.21859 0.98169 1.00361 0.98717 1.83608 1.20949 1.54283 1.01592 1.24286 1.01994 1.08518 1.00930 1.20133 0.95353 0.94038 0.90825 0.93368 0.91223 0.92185 0.90930 0.82842 0.82246 0.92703 0.88406 0.92892 0.91840 0.87605 0.91600 0.92912 0.88355 0.93001 0.84599 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 36. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.13 5.61 8.94 127.77 1.14 6.75 16 2 N -0.82 -39.47 3.31 -364.92 -1.21 -40.67 16 3 C -0.28 -13.80 9.45 84.03 0.79 -13.01 16 4 H 0.11 5.48 7.16 -2.91 -0.02 5.46 16 5 C 0.00 0.08 5.07 84.86 0.43 0.51 16 6 N -0.86 -41.09 10.67 21.65 0.23 -40.86 16 7 Si 0.99 37.25 29.58 68.60 2.03 39.28 16 8 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 9 H -0.27 -10.02 7.11 99.48 0.71 -9.32 16 10 H -0.26 -9.72 7.11 99.48 0.71 -9.01 16 11 S 2.55 121.18 5.65 -56.49 -0.32 120.86 16 12 O -1.01 -52.05 16.06 -128.00 -2.06 -54.10 16 13 O -1.01 -49.26 15.83 -128.00 -2.03 -51.29 16 14 C -0.66 -28.61 5.97 22.26 0.13 -28.47 16 15 C -0.03 -1.30 9.42 21.92 0.21 -1.09 16 16 C -0.09 -3.31 10.05 22.46 0.23 -3.09 16 17 C 0.10 3.76 7.00 39.78 0.28 4.04 16 18 N -0.49 -15.84 10.52 -182.50 -1.92 -17.76 16 19 C 0.11 3.00 5.71 88.68 0.51 3.51 16 20 C 0.00 0.07 0.99 -52.93 -0.05 0.01 16 21 C -0.13 -2.00 8.44 71.98 0.61 -1.40 16 22 C -0.16 -2.01 7.51 71.98 0.54 -1.47 16 23 C -0.13 -2.14 8.44 71.98 0.61 -1.53 16 24 S 0.14 3.94 21.40 -56.49 -1.21 2.73 16 25 C -0.24 -9.05 6.56 22.94 0.15 -8.90 16 26 C 0.02 0.82 9.54 22.40 0.21 1.04 16 27 H 0.05 2.18 7.40 -2.39 -0.02 2.16 16 28 H 0.07 3.13 7.22 -2.39 -0.02 3.11 16 29 H 0.06 2.46 6.91 -2.39 -0.02 2.45 16 30 H 0.28 12.55 8.31 -92.70 -0.77 11.78 16 31 H 0.15 5.40 7.60 -2.91 -0.02 5.38 16 32 H 0.16 4.60 8.06 -2.91 -0.02 4.58 16 33 H 0.05 0.87 8.14 -2.39 -0.02 0.85 16 34 H 0.10 0.91 8.14 -2.38 -0.02 0.89 16 35 H 0.05 0.98 8.14 -2.39 -0.02 0.96 16 36 H 0.06 0.88 7.90 -2.39 -0.02 0.86 16 37 H 0.11 0.79 8.14 -2.39 -0.02 0.77 16 38 H 0.07 0.87 7.88 -2.39 -0.02 0.85 16 39 H 0.05 1.03 8.14 -2.38 -0.02 1.01 16 40 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 41 H 0.05 0.91 8.14 -2.39 -0.02 0.89 16 42 H 0.14 5.66 7.60 -2.91 -0.02 5.63 16 Total: -1.00 -63.99 370.46 0.34 -63.65 By element: Atomic # 1 Polarization: 20.21 SS G_CDS: 1.04 Total: 21.25 kcal Atomic # 6 Polarization: -48.88 SS G_CDS: 5.78 Total: -43.09 kcal Atomic # 7 Polarization: -96.39 SS G_CDS: -2.90 Total: -99.29 kcal Atomic # 8 Polarization: -101.31 SS G_CDS: -4.08 Total: -105.39 kcal Atomic # 14 Polarization: 37.25 SS G_CDS: 2.03 Total: 39.28 kcal Atomic # 16 Polarization: 125.12 SS G_CDS: -1.53 Total: 123.59 kcal Total: -63.99 0.34 -63.65 kcal The number of atoms in the molecule is 42 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095939307.mol2 42 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 26.754 kcal (2) G-P(sol) polarization free energy of solvation -63.995 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.241 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.344 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.651 kcal (6) G-S(sol) free energy of system = (1) + (5) -36.897 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.54 seconds