Wall clock time and date at job start Tue Mar 31 2020 05:48:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36937 * 120.00178 * 2 1 4 4 H 1.07999 * 120.00318 * 202.36907 * 3 2 1 5 5 C 1.38817 * 119.99911 * 22.37042 * 3 2 1 6 6 N 1.31622 * 119.99938 * 11.11736 * 5 3 2 7 7 Si 1.86799 * 120.00029 * 191.12025 * 5 3 2 8 8 H 1.48497 * 109.47284 * 59.99916 * 7 5 3 9 9 H 1.48499 * 109.47132 * 179.97438 * 7 5 3 10 10 H 1.48501 * 109.46934 * 300.00122 * 7 5 3 11 11 S 1.65602 * 120.00063 * 180.02562 * 2 1 3 12 12 O 1.42100 * 106.40023 * 156.45779 * 11 2 1 13 13 O 1.42097 * 106.39884 * 23.53931 * 11 2 1 14 14 C 1.76195 * 107.21571 * 269.99992 * 11 2 1 15 15 C 1.38223 * 119.99256 * 115.02510 * 14 11 2 16 16 C 1.38402 * 120.01130 * 179.97438 * 15 14 11 17 17 F 1.35101 * 120.00212 * 180.02562 * 16 15 14 18 18 C 1.38556 * 119.98926 * 0.02562 * 16 15 14 19 19 Br 1.89103 * 120.00668 * 179.97438 * 18 16 15 20 20 C 1.38243 * 119.98633 * 359.72769 * 18 16 15 21 21 C 1.38430 * 119.99087 * 294.99392 * 14 11 2 22 22 F 1.35095 * 119.99458 * 0.02697 * 21 14 11 23 23 H 1.09002 * 109.46852 * 274.22038 * 1 2 3 24 24 H 1.09006 * 109.46961 * 34.21165 * 1 2 3 25 25 H 1.08999 * 109.47106 * 154.21330 * 1 2 3 26 26 H 0.97001 * 119.99527 * 180.02562 * 6 5 3 27 27 H 1.07997 * 119.99149 * 359.96871 * 15 14 11 28 28 H 1.07997 * 120.01037 * 180.29652 * 20 18 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1688 1.2211 -0.3559 5 6 1.5340 2.3429 0.4575 6 7 0.3823 2.2692 1.0906 7 14 2.3399 4.0042 0.1748 8 1 2.4993 4.2353 -1.2834 9 1 1.4873 5.0730 0.7546 10 1 3.6734 4.0250 0.8280 11 16 2.2930 -1.4341 -0.0006 12 8 3.5759 -1.1565 -0.5450 13 8 1.4113 -2.4062 -0.5455 14 6 2.5538 -1.8865 1.6822 15 6 1.9585 -3.0251 2.1918 16 6 2.1635 -3.3811 3.5134 17 9 1.5819 -4.4944 4.0112 18 6 2.9651 -2.5956 4.3259 19 35 3.2450 -3.0812 6.1320 20 6 3.5645 -1.4597 3.8146 21 6 3.3553 -1.1018 2.4934 22 9 3.9370 0.0109 1.9948 23 1 -0.3633 0.0756 1.0249 24 1 -0.3633 0.8499 -0.5778 25 1 -0.3633 -0.9253 -0.4471 26 1 -0.0480 3.0778 1.4099 27 1 1.3332 -3.6370 1.5585 28 1 4.1933 -0.8498 4.4462 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095940207.mol2 28 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:48:47 Heat of formation + Delta-G solvation = -116.304921 kcal Electronic energy + Delta-G solvation = -21953.367093 eV Core-core repulsion = 18007.744541 eV Total energy + Delta-G solvation = -3945.622552 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 354.948 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -48.90038 -48.58688 -38.53909 -35.92945 -35.84780 -34.48475 -32.52381 -31.75193 -30.30325 -29.14967 -26.67386 -23.77500 -23.27120 -22.57290 -18.82313 -18.19307 -17.30659 -17.16772 -16.95224 -16.43437 -15.79470 -15.30196 -15.06720 -14.77771 -14.45154 -14.20650 -13.97383 -13.46079 -13.21189 -12.90254 -12.54593 -12.39739 -12.02928 -11.60841 -11.57110 -11.19978 -11.11537 -10.90940 -10.78997 -10.77883 -10.49295 -10.36780 -10.28240 -10.03026 -9.47771 -9.12334 -8.48262 -8.32229 -6.83367 -4.22499 0.60220 1.06469 1.29258 1.55605 3.02985 3.03721 3.08177 3.20624 3.80330 4.07605 4.24760 4.38187 4.55162 4.58099 4.93008 5.16401 5.39564 5.51320 5.67907 5.73016 6.10160 6.11959 6.29109 6.69796 6.77251 6.92598 7.00894 7.23723 8.04596 8.35478 8.85434 10.09691 Molecular weight = 354.95amu Principal moments of inertia in cm(-1) A = 0.015923 B = 0.004511 C = 0.003954 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1758.007264 B = 6205.714258 C = 7079.575089 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.117 3.883 2 N -0.785 5.785 3 C -0.211 4.211 4 H 0.124 0.876 5 C 0.030 3.970 6 N -0.816 5.816 7 Si 0.933 3.067 8 H -0.264 1.264 9 H -0.278 1.278 10 H -0.263 1.263 11 S 2.479 3.521 12 O -0.974 6.974 13 O -0.998 6.998 14 C -0.649 4.649 15 C -0.039 4.039 16 C 0.086 3.914 17 F -0.126 7.126 18 C -0.080 4.080 19 Br -0.028 7.028 20 C -0.127 4.127 21 C 0.193 3.807 22 F -0.102 7.102 23 H 0.055 0.945 24 H 0.078 0.922 25 H 0.049 0.951 26 H 0.281 0.719 27 H 0.162 0.838 28 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.865 -3.890 8.540 9.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.029 4.029 2 N -0.607 5.607 3 C -0.364 4.364 4 H 0.141 0.859 5 C -0.185 4.185 6 N -0.455 5.455 7 Si 0.757 3.243 8 H -0.189 1.189 9 H -0.203 1.203 10 H -0.187 1.187 11 S 2.574 3.426 12 O -0.963 6.963 13 O -0.987 6.987 14 C -0.722 4.722 15 C -0.059 4.059 16 C 0.064 3.936 17 F -0.105 7.105 18 C -0.161 4.161 19 Br 0.058 6.942 20 C -0.149 4.149 21 C 0.171 3.829 22 F -0.080 7.080 23 H 0.073 0.927 24 H 0.097 0.903 25 H 0.068 0.932 26 H 0.092 0.908 27 H 0.180 0.820 28 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges 2.126 -4.869 8.688 10.184 hybrid contribution 0.221 0.833 0.722 1.124 sum 2.347 -4.037 9.410 10.505 Atomic orbital electron populations 1.21440 0.78744 1.00522 1.02217 1.54708 1.13489 1.18961 1.73559 1.20339 1.01432 0.82641 1.32015 0.85882 1.25950 0.96369 1.01707 0.94503 1.70099 1.14599 1.31200 1.29633 0.85844 0.79552 0.79120 0.79769 1.18858 1.20298 1.18713 1.14996 0.74418 0.75176 0.77963 1.93365 1.41337 1.84192 1.77407 1.93304 1.64923 1.62054 1.78418 1.32995 1.03818 1.01178 1.34244 1.20784 0.97320 0.95330 0.92514 1.17452 0.97772 0.85715 0.92691 1.91529 1.82214 1.49086 1.87623 1.21642 1.03239 0.98870 0.92380 1.96718 1.95956 1.92342 1.09200 1.20973 1.02177 0.96808 0.94900 1.16880 0.91642 0.83601 0.90737 1.91675 1.81155 1.47986 1.87196 0.92672 0.90314 0.93205 0.90795 0.82029 0.82924 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.12 2.45 8.92 59.85 0.53 2.99 15 2 N -0.79 -17.98 3.31 -66.68 -0.22 -18.20 15 3 C -0.21 -4.90 8.24 -15.06 -0.12 -5.02 15 4 H 0.12 2.88 7.16 -52.49 -0.38 2.50 15 5 C 0.03 0.66 5.13 -17.43 -0.09 0.57 15 6 N -0.82 -18.18 10.57 55.49 0.59 -17.59 15 7 Si 0.93 17.28 29.57 -169.99 -5.03 12.25 15 8 H -0.26 -4.85 7.11 56.52 0.40 -4.45 15 9 H -0.28 -5.05 7.11 56.52 0.40 -4.65 15 10 H -0.26 -4.88 7.11 56.52 0.40 -4.47 15 11 S 2.48 56.86 5.30 -107.50 -0.57 56.29 15 12 O -0.97 -24.60 16.22 -57.17 -0.93 -25.53 15 13 O -1.00 -23.70 15.53 -57.17 -0.89 -24.58 15 14 C -0.65 -13.30 5.91 -39.52 -0.23 -13.54 15 15 C -0.04 -0.72 9.53 -39.53 -0.38 -1.09 15 16 C 0.09 1.46 7.27 -39.40 -0.29 1.17 15 17 F -0.13 -2.03 16.73 2.25 0.04 -1.99 15 18 C -0.08 -1.29 6.23 -39.46 -0.25 -1.54 15 19 Br -0.03 -0.37 33.28 -68.01 -2.26 -2.63 15 20 C -0.13 -2.11 9.77 -39.50 -0.39 -2.50 15 21 C 0.19 3.80 7.21 -39.43 -0.28 3.51 15 22 F -0.10 -2.14 15.05 2.25 0.03 -2.10 15 23 H 0.05 1.16 7.42 -51.93 -0.39 0.78 15 24 H 0.08 1.64 7.18 -51.93 -0.37 1.27 15 25 H 0.05 0.98 6.93 -51.93 -0.36 0.62 15 26 H 0.28 5.85 8.31 -40.82 -0.34 5.51 15 27 H 0.16 2.79 7.33 -52.49 -0.38 2.40 15 28 H 0.15 2.10 8.06 -52.49 -0.42 1.67 15 LS Contribution 287.47 15.07 4.33 4.33 Total: -1.00 -26.18 287.47 -7.83 -34.01 By element: Atomic # 1 Polarization: 2.63 SS G_CDS: -1.44 Total: 1.19 kcal Atomic # 6 Polarization: -13.96 SS G_CDS: -1.49 Total: -15.45 kcal Atomic # 7 Polarization: -36.16 SS G_CDS: 0.37 Total: -35.79 kcal Atomic # 8 Polarization: -48.30 SS G_CDS: -1.82 Total: -50.11 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 0.07 Total: -4.09 kcal Atomic # 14 Polarization: 17.28 SS G_CDS: -5.03 Total: 12.25 kcal Atomic # 16 Polarization: 56.86 SS G_CDS: -0.57 Total: 56.29 kcal Atomic # 35 Polarization: -0.37 SS G_CDS: -2.26 Total: -2.63 kcal Total LS contribution 4.33 Total: 4.33 kcal Total: -26.18 -7.83 -34.01 kcal The number of atoms in the molecule is 28 The average number of expansion shells was 15.00 The maximum number of expansion shells was 15 The minimum number of expansion shells was 15 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095940207.mol2 28 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -82.296 kcal (2) G-P(sol) polarization free energy of solvation -26.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -108.473 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.832 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -116.305 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds