Wall clock time and date at job start Tue Mar 31 2020 05:29:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46498 * 109.47161 * 2 1 4 4 C 1.46498 * 119.99874 * 274.99798 * 3 2 1 5 5 C 1.53011 * 109.46819 * 275.00170 * 4 3 2 6 6 S 1.65595 * 119.99850 * 95.00088 * 3 2 1 7 7 O 1.42105 * 106.40149 * 203.53728 * 6 3 2 8 8 O 1.42098 * 106.40317 * 336.45602 * 6 3 2 9 9 C 1.76204 * 107.21987 * 89.99964 * 6 3 2 10 10 C 1.38233 * 119.99533 * 269.72685 * 9 6 3 11 11 C 1.38239 * 119.99982 * 179.76851 * 10 9 6 12 12 C 1.38239 * 119.99405 * 0.49970 * 11 10 9 13 13 C 1.50702 * 119.99435 * 179.72803 * 12 11 10 14 14 H 1.09005 * 109.46815 * 160.02328 * 13 12 11 15 15 C 1.52998 * 109.47088 * 280.01967 * 13 12 11 16 16 N 1.46498 * 109.47634 * 40.02425 * 13 12 11 17 17 C 1.34771 * 120.00243 * 154.99934 * 16 13 12 18 18 O 1.21688 * 119.99974 * 359.97438 * 17 16 13 19 19 C 1.46375 * 120.00119 * 180.02562 * 17 16 13 20 20 H 1.08004 * 119.99861 * 359.97438 * 19 17 16 21 21 C 1.40043 * 120.00130 * 179.97438 * 19 17 16 22 22 N 1.30674 * 120.00071 * 359.97438 * 21 19 17 23 23 Si 1.86806 * 120.00146 * 179.97438 * 21 19 17 24 24 H 1.48506 * 109.47001 * 0.02562 * 23 21 19 25 25 H 1.48502 * 109.46865 * 119.99630 * 23 21 19 26 26 H 1.48493 * 109.47151 * 239.99996 * 23 21 19 27 27 C 1.38232 * 120.00487 * 359.75377 * 12 11 10 28 28 C 1.38226 * 120.00179 * 89.99674 * 9 6 3 29 29 H 1.08994 * 109.47597 * 179.97438 * 1 2 3 30 30 H 1.09005 * 109.47081 * 300.00493 * 1 2 3 31 31 H 1.09003 * 109.46581 * 60.00015 * 1 2 3 32 32 H 1.08996 * 109.46879 * 239.99339 * 2 1 3 33 33 H 1.09003 * 109.46581 * 119.99985 * 2 1 3 34 34 H 1.09001 * 109.47378 * 34.99890 * 4 3 2 35 35 H 1.09002 * 109.46925 * 155.00631 * 4 3 2 36 36 H 1.09000 * 109.46418 * 180.02562 * 5 4 3 37 37 H 1.08991 * 109.46892 * 299.99940 * 5 4 3 38 38 H 1.08992 * 109.47062 * 60.00677 * 5 4 3 39 39 H 1.08007 * 120.00465 * 359.97438 * 10 9 6 40 40 H 1.08002 * 120.00320 * 180.22865 * 11 10 9 41 41 H 1.09005 * 109.46998 * 60.00473 * 15 13 12 42 42 H 1.09001 * 109.47376 * 179.97438 * 15 13 12 43 43 H 1.08999 * 109.47934 * 300.00501 * 15 13 12 44 44 H 0.97005 * 119.99608 * 334.99570 * 16 13 12 45 45 H 0.97000 * 119.99691 * 180.02562 * 22 21 19 46 46 H 1.07990 * 120.00248 * 179.97438 * 27 12 11 47 47 H 1.08001 * 120.00418 * 0.02562 * 28 9 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1583 2.1086 -1.2639 5 6 3.5153 1.7837 -1.8917 6 16 2.4122 2.1201 1.4287 7 8 2.3058 3.5186 1.1998 8 8 1.6868 1.4415 2.4447 9 6 4.1170 1.7940 1.7320 10 6 4.4889 0.6742 2.4521 11 6 5.8267 0.4156 2.6860 12 6 6.7918 1.2826 2.2086 13 6 8.2498 1.0040 2.4689 14 1 8.8586 1.5549 1.7519 15 6 8.6081 1.4470 3.8888 16 7 8.5060 -0.4313 2.3258 17 6 9.7419 -0.8672 2.0113 18 8 10.6449 -0.0686 1.8457 19 6 9.9977 -2.3013 1.8678 20 1 9.1961 -3.0101 2.0144 21 6 11.2818 -2.7542 1.5405 22 7 12.2515 -1.8966 1.3626 23 14 11.6084 -4.5844 1.3580 24 1 10.3537 -5.3385 1.6081 25 1 12.0890 -4.8666 -0.0184 26 1 12.6418 -5.0030 2.3388 27 6 6.4197 2.4051 1.4930 28 6 5.0822 2.6608 1.2547 29 1 -0.3634 -1.0276 -0.0005 30 1 -0.3633 0.5139 0.8900 31 1 -0.3632 0.5139 -0.8900 32 1 1.8933 -0.5139 -0.8899 33 1 1.8933 -0.5139 0.8900 34 1 1.3618 1.8096 -1.9453 35 1 2.0923 3.1802 -1.0756 36 1 3.6196 2.3253 -2.8319 37 1 4.3117 2.0827 -1.2103 38 1 3.5813 0.7122 -2.0801 39 1 3.7346 -0.0006 2.8291 40 1 6.1175 -0.4612 3.2455 41 1 7.9993 0.8960 4.6058 42 1 9.6625 1.2451 4.0773 43 1 8.4176 2.5149 3.9954 44 1 7.7860 -1.0679 2.4575 45 1 13.1408 -2.2103 1.1355 46 1 7.1736 3.0825 1.1205 47 1 4.7914 3.5382 0.6962 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095942136.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:29:16 Heat of formation + Delta-G solvation = -93.575578 kcal Electronic energy + Delta-G solvation = -29650.366173 eV Core-core repulsion = 25538.895236 eV Total energy + Delta-G solvation = -4111.470937 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 354.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -39.67444 -37.49970 -37.48194 -37.39435 -36.01335 -34.55769 -32.50205 -32.26859 -31.26493 -30.75353 -29.11543 -29.04386 -26.19574 -24.15669 -23.92575 -23.00602 -22.42428 -21.19112 -19.42661 -19.09191 -18.23110 -17.79351 -17.37339 -16.62045 -15.77435 -15.64340 -15.23029 -14.87066 -14.65862 -14.44174 -14.20856 -14.01530 -13.86154 -13.76583 -13.59220 -13.49488 -13.22507 -12.89415 -12.60034 -12.44164 -12.42138 -12.26428 -12.22191 -12.07439 -12.02753 -11.72160 -11.67677 -11.39463 -11.31935 -11.19878 -11.05067 -11.04696 -10.82114 -10.58485 -10.47864 -10.24347 -9.47710 -9.15556 -9.07714 -8.92734 -7.71802 -7.66129 -6.26146 -4.72058 0.17595 0.76933 1.26557 2.68311 3.08130 3.16649 3.20735 3.41395 3.62075 4.04245 4.08234 4.35461 4.50580 4.59328 4.72625 4.76153 4.80966 4.82922 4.87528 5.02393 5.04873 5.08704 5.22798 5.28001 5.31715 5.44910 5.56620 5.59094 5.60121 5.60928 5.77124 5.87643 5.88550 5.89262 5.95557 5.96934 6.00030 6.03011 6.17788 6.28335 6.31197 6.59761 6.69639 6.81592 7.36514 7.80758 7.97235 8.23985 8.95390 9.41474 10.51456 10.69492 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.014534 B = 0.002519 C = 0.002357 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1925.993599 B =11114.803454 C =11875.673047 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.119 3.881 3 N -0.997 5.997 4 C 0.111 3.889 5 C -0.179 4.179 6 S 2.692 3.308 7 O -0.960 6.960 8 O -0.957 6.957 9 C -0.687 4.687 10 C -0.019 4.019 11 C -0.133 4.133 12 C -0.013 4.013 13 C 0.179 3.821 14 H 0.090 0.910 15 C -0.153 4.153 16 N -0.761 5.761 17 C 0.556 3.444 18 O -0.579 6.579 19 C -0.544 4.544 20 H 0.068 0.932 21 C 0.087 3.913 22 N -0.767 5.767 23 Si 0.908 3.092 24 H -0.264 1.264 25 H -0.276 1.276 26 H -0.276 1.276 27 C -0.134 4.134 28 C -0.019 4.019 29 H 0.068 0.932 30 H 0.063 0.937 31 H 0.058 0.942 32 H 0.081 0.919 33 H 0.082 0.918 34 H 0.083 0.917 35 H 0.093 0.907 36 H 0.069 0.931 37 H 0.059 0.941 38 H 0.062 0.938 39 H 0.137 0.863 40 H 0.134 0.866 41 H 0.051 0.949 42 H 0.071 0.929 43 H 0.052 0.948 44 H 0.380 0.620 45 H 0.268 0.732 46 H 0.134 0.866 47 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.576 5.431 -4.114 22.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C -0.006 4.006 3 N -0.835 5.835 4 C -0.014 4.014 5 C -0.238 4.238 6 S 2.784 3.216 7 O -0.950 6.950 8 O -0.947 6.947 9 C -0.775 4.775 10 C -0.038 4.038 11 C -0.152 4.152 12 C -0.014 4.014 13 C 0.073 3.927 14 H 0.108 0.892 15 C -0.212 4.212 16 N -0.417 5.417 17 C 0.360 3.640 18 O -0.461 6.461 19 C -0.581 4.581 20 H 0.086 0.914 21 C -0.132 4.132 22 N -0.395 5.395 23 Si 0.732 3.268 24 H -0.188 1.188 25 H -0.201 1.201 26 H -0.201 1.201 27 C -0.153 4.153 28 C -0.039 4.039 29 H 0.087 0.913 30 H 0.082 0.918 31 H 0.077 0.923 32 H 0.099 0.901 33 H 0.101 0.899 34 H 0.101 0.899 35 H 0.111 0.889 36 H 0.088 0.912 37 H 0.078 0.922 38 H 0.081 0.919 39 H 0.155 0.845 40 H 0.152 0.848 41 H 0.070 0.930 42 H 0.090 0.910 43 H 0.071 0.929 44 H 0.213 0.787 45 H 0.079 0.921 46 H 0.152 0.848 47 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -21.262 6.527 -3.782 22.561 hybrid contribution 0.645 -1.568 -0.176 1.704 sum -20.617 4.959 -3.957 21.571 Atomic orbital electron populations 1.22220 0.95717 1.02608 1.02683 1.21258 0.94663 0.81080 1.03563 1.57601 1.79629 1.24038 1.22199 1.21397 0.98215 0.97075 0.84743 1.22296 0.97316 1.02752 1.01468 1.01928 0.73920 0.73279 0.72463 1.93554 1.86568 1.29779 1.85122 1.93570 1.70119 1.75420 1.55611 1.30760 1.24834 1.06602 1.15286 1.20833 0.96918 0.93619 0.92444 1.21157 0.92284 1.00383 1.01350 1.20699 0.96637 0.92787 0.91307 1.19574 0.88879 0.86763 0.97480 0.89231 1.22163 1.03065 0.99905 0.96073 1.46327 1.13226 1.03529 1.78618 1.18235 0.79555 0.89887 0.76295 1.90602 1.43260 1.57009 1.55255 1.20898 0.95868 0.90478 1.50888 0.91403 1.25706 0.95681 0.99011 0.92845 1.70025 1.01191 1.34785 1.33521 0.86315 0.79035 0.83081 0.78320 1.18771 1.20143 1.20126 1.21200 0.96092 0.98052 0.99951 1.20803 0.92483 0.96278 0.94307 0.91283 0.91817 0.92292 0.90098 0.89934 0.89886 0.88913 0.91199 0.92161 0.91904 0.84548 0.84799 0.92996 0.91021 0.92946 0.78748 0.92100 0.84838 0.84574 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.17 10.24 37.16 0.38 -0.79 16 2 C 0.12 0.87 6.07 -4.04 -0.02 0.85 16 3 N -1.00 -8.66 2.78 -114.37 -0.32 -8.98 16 4 C 0.11 0.80 6.40 -4.04 -0.03 0.77 16 5 C -0.18 -1.32 10.24 37.16 0.38 -0.94 16 6 S 2.69 30.95 5.65 -107.50 -0.61 30.35 16 7 O -0.96 -12.93 15.84 -57.17 -0.91 -13.84 16 8 O -0.96 -12.86 16.25 -57.17 -0.93 -13.79 16 9 C -0.69 -8.32 5.97 -39.59 -0.24 -8.55 16 10 C -0.02 -0.23 9.52 -39.58 -0.38 -0.61 16 11 C -0.13 -1.79 9.06 -39.58 -0.36 -2.15 16 12 C -0.01 -0.20 4.95 -104.62 -0.52 -0.72 16 13 C 0.18 3.26 2.78 -69.08 -0.19 3.07 16 14 H 0.09 1.82 7.44 -51.93 -0.39 1.43 16 15 C -0.15 -2.60 9.46 37.16 0.35 -2.25 16 16 N -0.76 -16.12 5.02 -56.35 -0.28 -16.40 16 17 C 0.56 15.16 7.71 -12.99 -0.10 15.06 16 18 O -0.58 -17.99 14.68 5.20 0.08 -17.92 16 19 C -0.54 -14.91 9.54 -35.63 -0.34 -15.25 16 20 H 0.07 1.70 7.85 -52.48 -0.41 1.29 16 21 C 0.09 2.38 5.50 -17.37 -0.10 2.29 16 22 N -0.77 -22.47 11.83 55.55 0.66 -21.81 16 23 Si 0.91 19.66 29.56 -169.99 -5.02 14.64 16 24 H -0.26 -5.50 7.11 56.52 0.40 -5.10 16 25 H -0.28 -5.87 7.11 56.52 0.40 -5.47 16 26 H -0.28 -5.88 7.11 56.52 0.40 -5.47 16 27 C -0.13 -1.78 9.67 -39.58 -0.38 -2.16 16 28 C -0.02 -0.23 8.42 -39.58 -0.33 -0.57 16 29 H 0.07 0.37 8.14 -51.93 -0.42 -0.05 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.35 8.14 -51.93 -0.42 -0.08 16 32 H 0.08 0.46 8.11 -51.93 -0.42 0.04 16 33 H 0.08 0.60 7.61 -51.93 -0.40 0.20 16 34 H 0.08 0.44 8.11 -51.93 -0.42 0.02 16 35 H 0.09 0.70 6.91 -51.93 -0.36 0.34 16 36 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 37 H 0.06 0.51 7.01 -51.93 -0.36 0.15 16 38 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 39 H 0.14 1.40 7.61 -52.48 -0.40 1.00 16 40 H 0.13 1.68 6.92 -52.49 -0.36 1.32 16 41 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 42 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 43 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.38 7.09 6.85 -40.82 -0.28 6.81 16 45 H 0.27 7.12 8.29 -40.82 -0.34 6.78 16 46 H 0.13 1.58 8.04 -52.49 -0.42 1.16 16 47 H 0.14 1.39 7.62 -52.49 -0.40 0.99 16 LS Contribution 401.95 15.07 6.06 6.06 Total: -1.00 -36.14 401.95 -10.29 -46.43 By element: Atomic # 1 Polarization: 14.34 SS G_CDS: -7.14 Total: 7.20 kcal Atomic # 6 Polarization: -10.07 SS G_CDS: -1.87 Total: -11.94 kcal Atomic # 7 Polarization: -47.25 SS G_CDS: 0.06 Total: -47.19 kcal Atomic # 8 Polarization: -43.79 SS G_CDS: -1.76 Total: -45.54 kcal Atomic # 14 Polarization: 19.66 SS G_CDS: -5.02 Total: 14.64 kcal Atomic # 16 Polarization: 30.95 SS G_CDS: -0.61 Total: 30.35 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -36.14 -10.29 -46.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095942136.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -47.146 kcal (2) G-P(sol) polarization free energy of solvation -36.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -83.289 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.287 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.429 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.576 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds