Wall clock time and date at job start Tue Mar 31 2020 06:06:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31510 * 1 3 3 Si 1.86810 * 119.99892 * 2 1 4 4 H 1.48498 * 109.46794 * 269.99946 * 3 2 1 5 5 H 1.48500 * 109.46801 * 30.00020 * 3 2 1 6 6 H 1.48501 * 109.46935 * 150.00111 * 3 2 1 7 7 C 1.37878 * 120.00143 * 180.02562 * 2 1 3 8 8 H 1.08000 * 119.99807 * 0.02562 * 7 2 1 9 9 C 1.50697 * 120.00046 * 179.97438 * 7 2 1 10 10 S 1.81401 * 109.47082 * 180.02562 * 9 7 2 11 11 C 1.76206 * 102.99991 * 180.02562 * 10 9 7 12 12 C 1.38789 * 120.10359 * 359.97438 * 11 10 9 13 13 C 1.38196 * 119.98809 * 180.02562 * 12 11 10 14 14 C 1.38305 * 120.20018 * 359.74386 * 13 12 11 15 15 C 1.38251 * 120.20571 * 0.51018 * 14 13 12 16 16 C 1.38647 * 120.01048 * 359.49289 * 15 14 13 17 17 N 1.40141 * 120.10178 * 180.23093 * 16 15 14 18 18 C 1.34779 * 119.99886 * 325.33731 * 17 16 15 19 19 O 1.21297 * 120.00017 * 4.46921 * 18 17 16 20 20 C 1.50696 * 120.00075 * 184.47301 * 18 17 16 21 21 H 1.09001 * 110.66777 * 304.29625 * 20 18 17 22 22 C 1.54709 * 110.74894 * 67.51630 * 20 18 17 23 23 C 1.51637 * 101.92956 * 143.60779 * 22 20 18 24 24 C 1.37745 * 132.18217 * 164.59494 * 23 22 20 25 25 C 1.38356 * 119.98132 * 180.40011 * 24 23 22 26 26 C 1.38290 * 119.76449 * 359.94793 * 25 24 23 27 27 C 1.37922 * 120.35348 * 359.87819 * 26 25 24 28 28 C 1.38882 * 107.04022 * 344.62271 * 23 22 20 29 29 O 1.36383 * 111.32144 * 359.07087 * 28 23 22 30 30 H 0.97000 * 119.99956 * 0.02562 * 1 2 3 31 31 H 1.09000 * 109.47224 * 60.00132 * 9 7 2 32 32 H 1.09004 * 109.47231 * 299.99806 * 9 7 2 33 33 H 1.08004 * 120.00766 * 0.04388 * 12 11 10 34 34 H 1.08003 * 119.89891 * 180.02562 * 13 12 11 35 35 H 1.07998 * 119.89533 * 180.27898 * 14 13 12 36 36 H 1.07998 * 119.99466 * 179.76813 * 15 14 13 37 37 H 0.96994 * 120.00325 * 145.33159 * 17 16 15 38 38 H 1.09008 * 110.93864 * 261.76439 * 22 20 18 39 39 H 1.08995 * 110.93958 * 25.44528 * 22 20 18 40 40 H 1.07998 * 120.01184 * 0.35533 * 24 23 22 41 41 H 1.07989 * 120.11697 * 179.97438 * 25 24 23 42 42 H 1.08001 * 119.81986 * 179.85996 * 26 25 24 43 43 H 1.07998 * 119.88694 * 179.97438 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7000 7 6 2.0045 -1.1940 -0.0005 8 1 1.4645 -2.1293 -0.0014 9 6 3.5115 -1.1940 -0.0011 10 16 4.1162 -2.9043 -0.0025 11 6 5.8670 -2.7057 -0.0023 12 6 6.4233 -1.4342 -0.0018 13 6 7.7968 -1.2812 -0.0021 14 6 8.6206 -2.3921 0.0023 15 6 8.0751 -3.6625 -0.0034 16 6 6.6984 -3.8260 -0.0031 17 7 6.1434 -5.1129 -0.0041 18 6 6.7580 -6.1112 -0.6691 19 8 7.8318 -5.9164 -1.1985 20 6 6.1109 -7.4695 -0.7550 21 1 5.8923 -7.8552 0.2408 22 6 4.8259 -7.4111 -1.6145 23 6 4.8664 -8.7475 -2.3300 24 6 3.9096 -9.4542 -3.0246 25 6 4.2246 -10.6808 -3.5817 26 6 5.5016 -11.1919 -3.4391 27 6 6.4623 -10.4844 -2.7471 28 6 6.1541 -9.2475 -2.1858 29 8 6.9449 -8.3858 -1.4843 30 1 -0.4850 0.8400 -0.0004 31 1 3.8752 -0.6804 0.8888 32 1 3.8745 -0.6800 -0.8912 33 1 5.7830 -0.5644 -0.0008 34 1 8.2282 -0.2910 -0.0013 35 1 9.6933 -2.2668 0.0066 36 1 8.7216 -4.5276 -0.0037 37 1 5.3172 -5.2851 0.4738 38 1 3.9394 -7.3331 -0.9850 39 1 4.8704 -6.5867 -2.3261 40 1 2.9135 -9.0512 -3.1336 41 1 3.4760 -11.2369 -4.1263 42 1 5.7479 -12.1504 -3.8716 43 1 7.4571 -10.8909 -2.6400 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953544.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:37 Heat of formation + Delta-G solvation = -7.240507 kcal Electronic energy + Delta-G solvation = -27401.815286 eV Core-core repulsion = 23503.678376 eV Total energy + Delta-G solvation = -3898.136910 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 355.103 amu Computer time = 0.74 seconds Orbital eigenvalues (eV) -41.69786 -40.23413 -38.36838 -37.44336 -34.91061 -33.24906 -33.06220 -31.02253 -30.56172 -30.32422 -29.45631 -28.85872 -25.03236 -23.30785 -22.85337 -22.63087 -22.05863 -21.79566 -20.49498 -18.33084 -17.97240 -17.33518 -17.15291 -16.81239 -16.58881 -16.31945 -15.35689 -15.24918 -15.01813 -14.45562 -14.34771 -14.15058 -13.88006 -13.61750 -13.48789 -13.40733 -13.35207 -13.27666 -13.15114 -12.67114 -12.54358 -12.30078 -12.04909 -11.88806 -11.51359 -11.37290 -11.09379 -10.96675 -10.66622 -10.37565 -10.34041 -9.90957 -9.83036 -9.40813 -9.33163 -9.18385 -8.84664 -8.44439 -8.27230 -6.82596 -6.33432 -4.38030 0.98825 1.09106 1.28793 1.48921 2.09396 2.31500 2.39021 3.11035 3.17471 3.19193 3.23369 3.32102 3.47070 3.87350 4.00007 4.13367 4.17591 4.45316 4.56292 4.63950 4.78011 4.95492 4.97872 5.06020 5.10111 5.15806 5.26075 5.36320 5.39432 5.46509 5.60023 5.61035 5.72897 5.98256 6.01502 6.10905 6.18713 6.23817 6.30140 6.34372 6.35875 6.45497 6.50715 6.65947 6.85277 7.07611 7.20701 7.23338 7.87896 8.11336 8.65667 9.21204 10.78098 Molecular weight = 355.10amu Principal moments of inertia in cm(-1) A = 0.011195 B = 0.002689 C = 0.002211 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.568560 B =10411.602687 C =12660.280939 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.084 3.916 3 Si 0.876 3.124 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.522 4.522 8 H 0.085 0.915 9 C 0.032 3.968 10 S -0.127 6.127 11 C -0.096 4.096 12 C -0.122 4.122 13 C -0.111 4.111 14 C -0.123 4.123 15 C -0.104 4.104 16 C 0.146 3.854 17 N -0.656 5.656 18 C 0.520 3.480 19 O -0.500 6.500 20 C 0.067 3.933 21 H 0.117 0.883 22 C -0.101 4.101 23 C -0.168 4.168 24 C -0.066 4.066 25 C -0.148 4.148 26 C -0.086 4.086 27 C -0.136 4.136 28 C 0.103 3.897 29 O -0.274 6.274 30 H 0.270 0.730 31 H 0.044 0.956 32 H 0.039 0.961 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.139 0.861 37 H 0.415 0.585 38 H 0.108 0.892 39 H 0.101 0.899 40 H 0.129 0.871 41 H 0.129 0.871 42 H 0.131 0.869 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.205 -17.123 -1.987 21.122 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.523 5.523 2 C -0.121 4.121 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.103 0.897 9 C -0.115 4.115 10 S 0.120 5.880 11 C -0.212 4.212 12 C -0.146 4.146 13 C -0.131 4.131 14 C -0.145 4.145 15 C -0.125 4.125 16 C 0.047 3.953 17 N -0.303 5.303 18 C 0.305 3.695 19 O -0.373 6.373 20 C 0.007 3.993 21 H 0.135 0.865 22 C -0.138 4.138 23 C -0.169 4.169 24 C -0.085 4.085 25 C -0.166 4.166 26 C -0.104 4.104 27 C -0.154 4.154 28 C 0.058 3.942 29 O -0.187 6.187 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.057 0.943 33 H 0.148 0.852 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.156 0.844 37 H 0.252 0.748 38 H 0.126 0.874 39 H 0.119 0.881 40 H 0.147 0.853 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.225 -17.897 -2.371 21.803 hybrid contribution 0.512 2.181 0.238 2.253 sum 12.737 -15.716 -2.132 20.342 Atomic orbital electron populations 1.69843 1.06154 1.27578 1.48676 1.24820 0.94758 0.98753 0.93806 0.86842 0.80394 0.83560 0.79030 1.19672 1.20575 1.18919 1.20369 0.86420 0.95499 1.53823 0.89692 1.21737 1.01410 0.88430 0.99963 1.85135 0.93154 1.19294 1.90392 1.21993 0.99257 0.94852 1.05073 1.21150 0.95729 0.95650 1.02110 1.21057 0.93083 0.98762 1.00223 1.20964 0.99619 0.91900 1.01981 1.21130 0.92830 0.98422 1.00118 1.17080 0.91711 0.82189 1.04358 1.43248 1.28074 1.07252 1.51680 1.20082 0.85697 0.85221 0.78469 1.90742 1.20185 1.82016 1.44387 1.23092 0.89608 0.88511 0.98070 0.86530 1.21783 0.97172 0.96099 0.98768 1.20690 0.95132 0.96728 1.04380 1.20374 0.98639 0.93995 0.95444 1.21071 0.97032 0.96433 1.02072 1.20890 0.92751 0.99465 0.97314 1.20257 1.01118 0.91832 1.02212 1.19669 0.89503 0.90993 0.94009 1.87002 1.30568 1.41682 1.59437 0.91976 0.93791 0.94265 0.85203 0.85976 0.85884 0.84358 0.74754 0.87357 0.88085 0.85325 0.85317 0.85074 0.85316 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.56 13.96 55.43 0.77 -24.79 16 2 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 3 Si 0.88 19.95 27.47 -169.99 -4.67 15.28 16 4 H -0.27 -6.10 7.11 56.52 0.40 -5.70 16 5 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 6 H -0.26 -5.70 6.54 56.52 0.37 -5.33 16 7 C -0.52 -13.93 9.68 -34.44 -0.33 -14.26 16 8 H 0.09 2.46 7.96 -52.49 -0.42 2.05 16 9 C 0.03 0.72 3.16 36.00 0.11 0.84 16 10 S -0.13 -2.41 20.72 -107.50 -2.23 -4.64 16 11 C -0.10 -1.66 6.12 -38.90 -0.24 -1.90 16 12 C -0.12 -2.01 9.36 -39.39 -0.37 -2.38 16 13 C -0.11 -1.55 10.04 -39.57 -0.40 -1.95 16 14 C -0.12 -1.66 10.04 -39.55 -0.40 -2.06 16 15 C -0.10 -1.56 8.70 -39.43 -0.34 -1.90 16 16 C 0.15 2.31 6.32 -83.43 -0.53 1.78 16 17 N -0.66 -8.76 5.02 -9.71 -0.05 -8.81 16 18 C 0.52 7.13 6.97 -10.99 -0.08 7.05 16 19 O -0.50 -8.58 13.99 -13.52 -0.19 -8.77 16 20 C 0.07 0.74 4.04 -26.99 -0.11 0.63 16 21 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 22 C -0.10 -1.03 6.64 -26.52 -0.18 -1.21 16 23 C -0.17 -1.82 6.27 -104.10 -0.65 -2.47 16 24 C -0.07 -0.61 10.03 -39.72 -0.40 -1.01 16 25 C -0.15 -1.19 10.07 -39.52 -0.40 -1.59 16 26 C -0.09 -0.69 10.02 -39.68 -0.40 -1.09 16 27 C -0.14 -1.33 10.06 -39.31 -0.40 -1.73 16 28 C 0.10 1.23 7.04 -38.95 -0.27 0.95 16 29 O -0.27 -3.67 10.41 -40.03 -0.42 -4.09 16 30 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.04 0.97 6.81 -51.92 -0.35 0.62 16 32 H 0.04 0.87 7.18 -51.92 -0.37 0.49 16 33 H 0.13 2.20 5.88 -52.48 -0.31 1.89 16 34 H 0.12 1.39 8.06 -52.48 -0.42 0.97 16 35 H 0.12 1.32 8.06 -52.49 -0.42 0.90 16 36 H 0.14 2.08 6.20 -52.49 -0.33 1.76 16 37 H 0.42 4.75 7.97 -40.82 -0.33 4.43 16 38 H 0.11 0.86 8.14 -51.92 -0.42 0.43 16 39 H 0.10 1.15 7.92 -51.93 -0.41 0.74 16 40 H 0.13 0.97 8.06 -52.49 -0.42 0.55 16 41 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 42 H 0.13 0.69 8.06 -52.49 -0.42 0.27 16 43 H 0.13 1.07 8.06 -52.49 -0.42 0.65 16 LS Contribution 375.20 15.07 5.65 5.65 Total: -1.00 -32.09 375.20 -11.65 -43.75 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.06 Total: 6.51 kcal Atomic # 6 Polarization: -14.62 SS G_CDS: -5.47 Total: -20.09 kcal Atomic # 7 Polarization: -34.33 SS G_CDS: 0.72 Total: -33.60 kcal Atomic # 8 Polarization: -12.25 SS G_CDS: -0.61 Total: -12.86 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.67 Total: 15.28 kcal Atomic # 16 Polarization: -2.41 SS G_CDS: -2.23 Total: -4.64 kcal Total LS contribution 5.65 Total: 5.65 kcal Total: -32.09 -11.65 -43.75 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953544.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.506 kcal (2) G-P(sol) polarization free energy of solvation -32.093 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.413 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.654 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.747 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.241 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.74 seconds