Wall clock time and date at job start Tue Mar 31 2020 06:06:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86808 * 119.99977 * 2 1 4 4 H 1.48507 * 109.46898 * 270.00010 * 3 2 1 5 5 H 1.48501 * 109.47021 * 29.99443 * 3 2 1 6 6 H 1.48493 * 109.47100 * 149.99781 * 3 2 1 7 7 C 1.37879 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00138 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99886 * 179.97438 * 7 2 1 10 10 S 1.81398 * 109.46808 * 180.02562 * 9 7 2 11 11 C 1.76196 * 103.00155 * 180.02562 * 10 9 7 12 12 C 1.38788 * 120.10026 * 0.02562 * 11 10 9 13 13 C 1.38206 * 119.98746 * 179.70166 * 12 11 10 14 14 C 1.38303 * 120.19467 * 0.55696 * 13 12 11 15 15 C 1.38246 * 120.21167 * 359.44224 * 14 13 12 16 16 C 1.38646 * 120.00848 * 0.28013 * 15 14 13 17 17 N 1.40152 * 120.10003 * 180.02562 * 16 15 14 18 18 C 1.34770 * 119.99729 * 24.81495 * 17 16 15 19 19 O 1.21299 * 120.00450 * 5.52669 * 18 17 16 20 20 C 1.50701 * 120.00228 * 185.52780 * 18 17 16 21 21 H 1.09006 * 110.66177 * 53.23042 * 20 18 17 22 22 C 1.54710 * 110.74872 * 289.82297 * 20 18 17 23 23 C 1.51649 * 101.92627 * 216.39700 * 22 20 18 24 24 C 1.37745 * 132.16819 * 195.90881 * 23 22 20 25 25 C 1.38350 * 119.97375 * 179.01109 * 24 23 22 26 26 C 1.38282 * 119.77035 * 359.97438 * 25 24 23 27 27 C 1.37936 * 120.35131 * 0.18027 * 26 25 24 28 28 C 1.38877 * 107.03939 * 15.34853 * 23 22 20 29 29 O 1.36132 * 111.23823 * 1.12138 * 28 23 22 30 30 H 0.97001 * 120.00673 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.46895 * 60.00329 * 9 7 2 32 32 H 1.08993 * 109.47057 * 300.00139 * 9 7 2 33 33 H 1.07999 * 120.01314 * 0.02562 * 12 11 10 34 34 H 1.07994 * 119.90328 * 180.29612 * 13 12 11 35 35 H 1.08005 * 119.89050 * 179.72171 * 14 13 12 36 36 H 1.08005 * 119.99886 * 180.30138 * 15 14 13 37 37 H 0.96993 * 120.00000 * 204.81744 * 17 16 15 38 38 H 1.09004 * 110.93655 * 334.54564 * 22 20 18 39 39 H 1.08994 * 110.94307 * 98.23436 * 22 20 18 40 40 H 1.08000 * 120.01457 * 358.98376 * 24 23 22 41 41 H 1.08002 * 120.11470 * 179.97438 * 25 24 23 42 42 H 1.08001 * 119.83068 * 180.20340 * 26 25 24 43 43 H 1.07996 * 119.88120 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1939 0.0000 10 16 4.1162 -2.9042 0.0001 11 6 5.8670 -2.7056 0.0001 12 6 6.4233 -1.4341 0.0006 13 6 7.7968 -1.2810 0.0069 14 6 8.6205 -2.3920 0.0011 15 6 8.0752 -3.6623 0.0006 16 6 6.6984 -3.8259 0.0001 17 7 6.1435 -5.1129 0.0002 18 6 6.8493 -6.1510 0.4905 19 8 7.9221 -5.9577 1.0226 20 6 6.3058 -7.5520 0.3778 21 1 6.0442 -7.7812 -0.6553 22 6 5.0871 -7.7439 1.3114 23 6 5.2730 -9.1744 1.7794 24 6 4.4186 -10.0661 2.3894 25 6 4.8551 -11.3428 2.6952 26 6 6.1495 -11.7184 2.3859 27 6 7.0078 -10.8260 1.7779 28 6 6.5776 -9.5371 1.4711 29 8 7.2510 -8.5077 0.8880 30 1 -0.4851 0.8400 -0.0004 31 1 3.8751 -0.6795 0.8895 32 1 3.8745 -0.6807 -0.8904 33 1 5.7830 -0.5643 0.0014 34 1 8.2282 -0.2910 0.0121 35 1 9.6933 -2.2667 0.0015 36 1 8.7217 -4.5275 0.0010 37 1 5.2515 -5.2564 -0.3527 38 1 5.1273 -7.0509 2.1518 39 1 4.1532 -7.6324 0.7607 40 1 3.4084 -9.7687 2.6292 41 1 4.1872 -12.0437 3.1739 42 1 6.4903 -12.7158 2.6212 43 1 8.0170 -11.1274 1.5394 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095953545.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:41 Heat of formation + Delta-G solvation = -5.393920 kcal Electronic energy + Delta-G solvation = -27309.557495 eV Core-core repulsion = 23411.500659 eV Total energy + Delta-G solvation = -3898.056836 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 355.103 amu Computer time = 0.73 seconds Orbital eigenvalues (eV) -41.75802 -40.29671 -38.37029 -37.47819 -34.94371 -33.25367 -33.10182 -31.01497 -30.59348 -30.35337 -29.45842 -28.87426 -25.06466 -23.33787 -22.88755 -22.65844 -22.08958 -21.81505 -20.48709 -18.36072 -18.00476 -17.33870 -17.19432 -16.82045 -16.63083 -16.30538 -15.40028 -15.19978 -15.05644 -14.48055 -14.36682 -14.16617 -13.90500 -13.65503 -13.51014 -13.41984 -13.39676 -13.31121 -13.15271 -12.64610 -12.59866 -12.32269 -12.08208 -11.89799 -11.54475 -11.37403 -11.12280 -10.95729 -10.70605 -10.47904 -10.34554 -9.88413 -9.82209 -9.38994 -9.35818 -9.21644 -8.84611 -8.47089 -8.21150 -6.81394 -6.33323 -4.37965 0.95550 1.06012 1.27514 1.49127 2.07971 2.29468 2.38758 3.10905 3.16659 3.19185 3.20272 3.31163 3.44874 3.89775 3.95992 4.09321 4.17679 4.40895 4.53169 4.60898 4.75212 4.91943 4.97936 5.05661 5.07326 5.16067 5.22315 5.33132 5.37664 5.41534 5.58922 5.60904 5.69472 5.98394 5.98648 6.07530 6.15716 6.20848 6.27759 6.35255 6.35853 6.45832 6.50433 6.67265 6.83006 7.08778 7.20402 7.23303 7.83758 8.11394 8.65754 9.21217 10.78188 Molecular weight = 355.10amu Principal moments of inertia in cm(-1) A = 0.012299 B = 0.002525 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.992251 B =11085.339479 C =13189.062975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.886 5.886 2 C 0.084 3.916 3 Si 0.876 3.124 4 H -0.271 1.271 5 H -0.280 1.280 6 H -0.265 1.265 7 C -0.523 4.523 8 H 0.085 0.915 9 C 0.034 3.966 10 S -0.131 6.131 11 C -0.102 4.102 12 C -0.118 4.118 13 C -0.115 4.115 14 C -0.119 4.119 15 C -0.115 4.115 16 C 0.152 3.848 17 N -0.653 5.653 18 C 0.519 3.481 19 O -0.498 6.498 20 C 0.067 3.933 21 H 0.119 0.881 22 C -0.102 4.102 23 C -0.170 4.170 24 C -0.066 4.066 25 C -0.148 4.148 26 C -0.086 4.086 27 C -0.136 4.136 28 C 0.105 3.895 29 O -0.274 6.274 30 H 0.270 0.730 31 H 0.044 0.956 32 H 0.039 0.961 33 H 0.130 0.870 34 H 0.122 0.878 35 H 0.123 0.877 36 H 0.144 0.856 37 H 0.416 0.584 38 H 0.100 0.900 39 H 0.108 0.892 40 H 0.128 0.872 41 H 0.129 0.871 42 H 0.132 0.868 43 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.932 -17.947 1.084 22.147 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.121 4.121 3 Si 0.702 3.298 4 H -0.197 1.197 5 H -0.206 1.206 6 H -0.189 1.189 7 C -0.561 4.561 8 H 0.103 0.897 9 C -0.113 4.113 10 S 0.115 5.885 11 C -0.217 4.217 12 C -0.143 4.143 13 C -0.136 4.136 14 C -0.141 4.141 15 C -0.136 4.136 16 C 0.052 3.948 17 N -0.299 5.299 18 C 0.304 3.696 19 O -0.371 6.371 20 C 0.007 3.993 21 H 0.136 0.864 22 C -0.139 4.139 23 C -0.171 4.171 24 C -0.084 4.084 25 C -0.166 4.166 26 C -0.104 4.104 27 C -0.154 4.154 28 C 0.060 3.940 29 O -0.187 6.187 30 H 0.080 0.920 31 H 0.062 0.938 32 H 0.058 0.942 33 H 0.148 0.852 34 H 0.140 0.860 35 H 0.141 0.859 36 H 0.162 0.838 37 H 0.254 0.746 38 H 0.119 0.881 39 H 0.126 0.874 40 H 0.146 0.854 41 H 0.147 0.853 42 H 0.149 0.851 43 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges 12.960 -18.710 1.431 22.805 hybrid contribution 0.458 2.191 -0.189 2.247 sum 13.417 -16.519 1.242 21.318 Atomic orbital electron populations 1.69840 1.06153 1.27586 1.48658 1.24819 0.94761 0.98756 0.93808 0.86842 0.80419 0.83553 0.79010 1.19660 1.20574 1.18918 1.20373 0.86418 0.95508 1.53842 0.89685 1.21730 1.01390 0.88230 0.99984 1.85074 0.93239 1.19574 1.90608 1.21887 0.99150 0.94789 1.05864 1.21139 0.95724 0.95598 1.01819 1.21047 0.93080 0.98760 1.00697 1.20966 0.99605 0.91877 1.01623 1.21240 0.92790 0.98729 1.00860 1.17135 0.91905 0.82152 1.03651 1.43317 1.20090 1.05604 1.60934 1.20076 0.85425 0.85666 0.78410 1.90720 1.21208 1.84670 1.40504 1.23134 0.88288 0.87493 1.00383 0.86382 1.21793 0.98148 0.94230 0.99760 1.20693 0.95415 0.95785 1.05181 1.20365 0.99175 0.92485 0.96424 1.21068 0.96425 0.96398 1.02751 1.20897 0.93386 0.99061 0.97010 1.20266 1.01420 0.89621 1.04124 1.19612 0.90817 0.89051 0.94552 1.86928 1.30801 1.29277 1.71660 0.91972 0.93760 0.94241 0.85202 0.85998 0.85888 0.83807 0.74630 0.88149 0.87368 0.85363 0.85314 0.85051 0.85285 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.57 13.96 55.43 0.77 -24.79 16 2 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 3 Si 0.88 19.95 27.47 -169.99 -4.67 15.28 16 4 H -0.27 -6.06 7.11 56.52 0.40 -5.66 16 5 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 6 H -0.26 -5.73 6.54 56.52 0.37 -5.36 16 7 C -0.52 -13.95 9.68 -34.44 -0.33 -14.29 16 8 H 0.09 2.47 7.96 -52.49 -0.42 2.05 16 9 C 0.03 0.77 3.16 36.01 0.11 0.89 16 10 S -0.13 -2.51 20.55 -107.50 -2.21 -4.72 16 11 C -0.10 -1.76 6.12 -38.90 -0.24 -2.00 16 12 C -0.12 -1.96 9.36 -39.39 -0.37 -2.33 16 13 C -0.12 -1.63 10.04 -39.57 -0.40 -2.03 16 14 C -0.12 -1.62 10.04 -39.55 -0.40 -2.02 16 15 C -0.11 -1.74 8.72 -39.43 -0.34 -2.09 16 16 C 0.15 2.41 6.44 -83.43 -0.54 1.87 16 17 N -0.65 -8.82 5.17 -9.71 -0.05 -8.87 16 18 C 0.52 7.04 6.93 -10.99 -0.08 6.97 16 19 O -0.50 -8.42 13.75 -13.50 -0.19 -8.61 16 20 C 0.07 0.73 4.05 -26.98 -0.11 0.62 16 21 H 0.12 0.95 8.14 -51.93 -0.42 0.52 16 22 C -0.10 -0.99 6.64 -26.52 -0.18 -1.17 16 23 C -0.17 -1.76 6.27 -104.10 -0.65 -2.42 16 24 C -0.07 -0.58 10.03 -39.72 -0.40 -0.98 16 25 C -0.15 -1.13 10.07 -39.52 -0.40 -1.53 16 26 C -0.09 -0.66 10.02 -39.68 -0.40 -1.05 16 27 C -0.14 -1.29 10.06 -39.30 -0.40 -1.69 16 28 C 0.10 1.21 7.04 -38.95 -0.27 0.94 16 29 O -0.27 -3.59 10.39 -39.20 -0.41 -4.00 16 30 H 0.27 7.25 8.31 -40.82 -0.34 6.91 16 31 H 0.04 0.99 6.80 -51.93 -0.35 0.64 16 32 H 0.04 0.86 7.18 -51.93 -0.37 0.49 16 33 H 0.13 2.21 5.88 -52.49 -0.31 1.90 16 34 H 0.12 1.40 8.06 -52.49 -0.42 0.98 16 35 H 0.12 1.34 8.06 -52.48 -0.42 0.92 16 36 H 0.14 2.20 5.79 -52.48 -0.30 1.90 16 37 H 0.42 4.91 7.65 -40.82 -0.31 4.60 16 38 H 0.10 1.07 7.92 -51.93 -0.41 0.65 16 39 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 40 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 41 H 0.13 0.68 8.06 -52.49 -0.42 0.26 16 42 H 0.13 0.65 8.06 -52.49 -0.42 0.23 16 43 H 0.13 1.04 8.06 -52.49 -0.42 0.62 16 LS Contribution 374.29 15.07 5.64 5.64 Total: -1.00 -32.03 374.29 -11.61 -43.64 By element: Atomic # 1 Polarization: 11.57 SS G_CDS: -5.03 Total: 6.54 kcal Atomic # 6 Polarization: -14.64 SS G_CDS: -5.48 Total: -20.11 kcal Atomic # 7 Polarization: -34.38 SS G_CDS: 0.72 Total: -33.66 kcal Atomic # 8 Polarization: -12.01 SS G_CDS: -0.59 Total: -12.60 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -4.67 Total: 15.28 kcal Atomic # 16 Polarization: -2.51 SS G_CDS: -2.21 Total: -4.72 kcal Total LS contribution 5.64 Total: 5.64 kcal Total: -32.03 -11.61 -43.64 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953545.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 38.246 kcal (2) G-P(sol) polarization free energy of solvation -32.026 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.220 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.614 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.640 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.394 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds