Wall clock time and date at job start Tue Mar 31 2020 06:06:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31506 * 1 3 3 Si 1.86808 * 119.99977 * 2 1 4 4 H 1.48507 * 109.46898 * 270.00010 * 3 2 1 5 5 H 1.48501 * 109.47021 * 29.99443 * 3 2 1 6 6 H 1.48493 * 109.47100 * 149.99781 * 3 2 1 7 7 C 1.37879 * 120.00288 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00138 * 0.02562 * 7 2 1 9 9 C 1.50705 * 119.99886 * 179.97438 * 7 2 1 10 10 S 1.81398 * 109.46808 * 180.02562 * 9 7 2 11 11 C 1.76196 * 103.00155 * 180.02562 * 10 9 7 12 12 C 1.38788 * 120.10026 * 0.02562 * 11 10 9 13 13 C 1.38206 * 119.98746 * 179.70166 * 12 11 10 14 14 C 1.38303 * 120.19467 * 0.55696 * 13 12 11 15 15 C 1.38246 * 120.21167 * 359.44224 * 14 13 12 16 16 C 1.38646 * 120.00848 * 0.28013 * 15 14 13 17 17 N 1.40152 * 120.10003 * 180.02562 * 16 15 14 18 18 C 1.34770 * 119.99729 * 24.81495 * 17 16 15 19 19 O 1.21299 * 120.00450 * 5.52669 * 18 17 16 20 20 C 1.50701 * 120.00228 * 185.52780 * 18 17 16 21 21 H 1.09006 * 110.66177 * 53.23042 * 20 18 17 22 22 C 1.54710 * 110.74872 * 289.82297 * 20 18 17 23 23 C 1.51649 * 101.92627 * 216.39700 * 22 20 18 24 24 C 1.37745 * 132.16819 * 195.90881 * 23 22 20 25 25 C 1.38350 * 119.97375 * 179.01109 * 24 23 22 26 26 C 1.38282 * 119.77035 * 359.97438 * 25 24 23 27 27 C 1.37936 * 120.35131 * 0.18027 * 26 25 24 28 28 C 1.38877 * 107.03939 * 15.34853 * 23 22 20 29 29 O 1.36132 * 111.23823 * 1.12138 * 28 23 22 30 30 H 0.97001 * 120.00673 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.46895 * 60.00329 * 9 7 2 32 32 H 1.08993 * 109.47057 * 300.00139 * 9 7 2 33 33 H 1.07999 * 120.01314 * 0.02562 * 12 11 10 34 34 H 1.07994 * 119.90328 * 180.29612 * 13 12 11 35 35 H 1.08005 * 119.89050 * 179.72171 * 14 13 12 36 36 H 1.08005 * 119.99886 * 180.30138 * 15 14 13 37 37 H 0.96993 * 120.00000 * 204.81744 * 17 16 15 38 38 H 1.09004 * 110.93655 * 334.54564 * 22 20 18 39 39 H 1.08994 * 110.94307 * 98.23436 * 22 20 18 40 40 H 1.08000 * 120.01457 * 358.98376 * 24 23 22 41 41 H 1.08002 * 120.11470 * 179.97438 * 25 24 23 42 42 H 1.08001 * 119.83068 * 180.20340 * 26 25 24 43 43 H 1.07996 * 119.88120 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0465 -1.4002 5 1 1.4465 2.6528 0.6999 6 1 3.5466 1.4403 0.7001 7 6 2.0045 -1.1940 0.0005 8 1 1.4646 -2.1294 0.0005 9 6 3.5116 -1.1939 0.0000 10 16 4.1162 -2.9042 0.0001 11 6 5.8670 -2.7056 0.0001 12 6 6.4233 -1.4341 0.0006 13 6 7.7968 -1.2810 0.0069 14 6 8.6205 -2.3920 0.0011 15 6 8.0752 -3.6623 0.0006 16 6 6.6984 -3.8259 0.0001 17 7 6.1435 -5.1129 0.0002 18 6 6.8493 -6.1510 0.4905 19 8 7.9221 -5.9577 1.0226 20 6 6.3058 -7.5520 0.3778 21 1 6.0442 -7.7812 -0.6553 22 6 5.0871 -7.7439 1.3114 23 6 5.2730 -9.1744 1.7794 24 6 4.4186 -10.0661 2.3894 25 6 4.8551 -11.3428 2.6952 26 6 6.1495 -11.7184 2.3859 27 6 7.0078 -10.8260 1.7779 28 6 6.5776 -9.5371 1.4711 29 8 7.2510 -8.5077 0.8880 30 1 -0.4851 0.8400 -0.0004 31 1 3.8751 -0.6795 0.8895 32 1 3.8745 -0.6807 -0.8904 33 1 5.7830 -0.5643 0.0014 34 1 8.2282 -0.2910 0.0121 35 1 9.6933 -2.2667 0.0015 36 1 8.7217 -4.5275 0.0010 37 1 5.2515 -5.2564 -0.3527 38 1 5.1273 -7.0509 2.1518 39 1 4.1532 -7.6324 0.7607 40 1 3.4084 -9.7687 2.6292 41 1 4.1872 -12.0437 3.1739 42 1 6.4903 -12.7158 2.6212 43 1 8.0170 -11.1274 1.5394 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000095953545.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:06:40 Heat of formation + Delta-G solvation = -22.239747 kcal Electronic energy + Delta-G solvation = -27310.287984 eV Core-core repulsion = 23411.500659 eV Total energy + Delta-G solvation = -3898.787326 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 355.103 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -42.62343 -41.35102 -39.46087 -38.27274 -36.10612 -35.25746 -33.90377 -32.33956 -31.55149 -31.27626 -31.04042 -29.85043 -25.95874 -24.97109 -24.15458 -23.56775 -23.12526 -22.61447 -21.58680 -19.63743 -19.03439 -18.82071 -18.18949 -18.03758 -17.67261 -17.08510 -16.66914 -16.44647 -16.16877 -15.97533 -15.38369 -15.19895 -15.06794 -14.95572 -14.84779 -14.47425 -14.43712 -14.31810 -14.15126 -14.06380 -13.90223 -13.25204 -13.08249 -12.80720 -12.70360 -12.62665 -12.27587 -12.21401 -12.13311 -11.80296 -11.78941 -11.64733 -11.03189 -10.98187 -10.92667 -10.62781 -9.88503 -9.40661 -9.20522 -8.40798 -8.25830 -6.51453 0.09910 0.27434 0.28136 0.37403 0.63792 1.23956 1.33347 1.34594 1.36660 1.44141 1.70647 2.26433 2.34851 2.72586 2.73821 2.92639 3.08818 3.25696 3.61732 3.79094 3.83036 3.89220 4.11056 4.19973 4.27649 4.31238 4.40147 4.43206 4.48626 4.51677 4.53225 4.64289 4.64798 4.68125 4.81157 5.04234 5.07292 5.20537 5.26434 5.33950 5.36088 5.41384 5.51410 5.53044 5.58762 5.94002 6.01072 6.09136 6.16425 6.52448 6.75500 7.11894 8.74242 Molecular weight = 355.10amu Principal moments of inertia in cm(-1) A = 0.012299 B = 0.002525 C = 0.002122 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2275.992251 B =11085.339479 C =13189.062975 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.934 5.934 2 C 0.026 3.974 3 Si 0.944 3.056 4 H -0.260 1.260 5 H -0.278 1.278 6 H -0.244 1.244 7 C -0.532 4.532 8 H 0.045 0.955 9 C 0.035 3.965 10 S -0.134 6.134 11 C -0.121 4.121 12 C -0.131 4.131 13 C -0.111 4.111 14 C -0.106 4.106 15 C -0.126 4.126 16 C 0.147 3.853 17 N -0.648 5.648 18 C 0.522 3.478 19 O -0.534 6.534 20 C 0.070 3.930 21 H 0.148 0.852 22 C -0.099 4.099 23 C -0.183 4.183 24 C -0.076 4.076 25 C -0.145 4.145 26 C -0.083 4.083 27 C -0.147 4.147 28 C 0.072 3.928 29 O -0.301 6.301 30 H 0.273 0.727 31 H 0.047 0.953 32 H 0.048 0.952 33 H 0.125 0.875 34 H 0.155 0.845 35 H 0.157 0.843 36 H 0.142 0.858 37 H 0.423 0.577 38 H 0.085 0.915 39 H 0.131 0.869 40 H 0.145 0.855 41 H 0.157 0.843 42 H 0.162 0.838 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.737 -18.252 1.216 23.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.572 5.572 2 C -0.175 4.175 3 Si 0.766 3.234 4 H -0.185 1.185 5 H -0.204 1.204 6 H -0.168 1.168 7 C -0.570 4.570 8 H 0.063 0.937 9 C -0.113 4.113 10 S 0.111 5.889 11 C -0.236 4.236 12 C -0.156 4.156 13 C -0.131 4.131 14 C -0.127 4.127 15 C -0.148 4.148 16 C 0.046 3.954 17 N -0.294 5.294 18 C 0.309 3.691 19 O -0.410 6.410 20 C 0.011 3.989 21 H 0.165 0.835 22 C -0.136 4.136 23 C -0.184 4.184 24 C -0.094 4.094 25 C -0.163 4.163 26 C -0.101 4.101 27 C -0.166 4.166 28 C 0.028 3.972 29 O -0.215 6.215 30 H 0.083 0.917 31 H 0.065 0.935 32 H 0.066 0.934 33 H 0.143 0.857 34 H 0.172 0.828 35 H 0.174 0.826 36 H 0.159 0.841 37 H 0.262 0.738 38 H 0.104 0.896 39 H 0.149 0.851 40 H 0.162 0.838 41 H 0.175 0.825 42 H 0.179 0.821 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 14.772 -19.038 1.556 24.147 hybrid contribution -0.035 2.111 -0.195 2.120 sum 14.737 -16.927 1.361 22.485 Atomic orbital electron populations 1.69985 1.08133 1.28838 1.50281 1.25786 0.95588 1.02924 0.93203 0.85760 0.79693 0.78246 0.79734 1.18489 1.20358 1.16776 1.20565 0.88810 0.94212 1.53452 0.93652 1.21494 0.98610 0.90911 1.00267 1.84906 0.95503 1.16827 1.91645 1.21821 0.97480 0.95875 1.08443 1.21288 0.97046 0.94973 1.02247 1.21375 0.91928 1.00479 0.99333 1.21383 1.01366 0.90914 0.99069 1.21400 0.92412 0.99630 1.01323 1.17303 0.92265 0.82589 1.03220 1.43318 1.20351 1.05096 1.60672 1.20570 0.84766 0.86574 0.77196 1.90690 1.22847 1.85312 1.42163 1.23246 0.88118 0.85442 1.02126 0.83507 1.21795 0.98589 0.93892 0.99301 1.20852 0.95451 0.96131 1.05986 1.20689 0.99795 0.92810 0.96059 1.21481 0.96814 0.96323 1.01644 1.21292 0.93136 0.99944 0.95718 1.20587 1.02314 0.89355 1.04302 1.19952 0.91547 0.89595 0.96141 1.86869 1.32112 1.30144 1.72376 0.91727 0.93526 0.93375 0.85731 0.82768 0.82561 0.84066 0.73831 0.89646 0.85066 0.83756 0.82516 0.82061 0.84569 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -55.43 13.96 21.45 0.30 -55.13 16 2 C 0.03 1.44 5.47 84.66 0.46 1.90 16 3 Si 0.94 40.79 27.47 68.60 1.88 42.67 16 4 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 5 H -0.28 -11.85 7.11 99.48 0.71 -11.15 16 6 H -0.24 -9.67 6.54 99.48 0.65 -9.02 16 7 C -0.53 -29.17 9.68 25.60 0.25 -28.92 16 8 H 0.05 2.77 7.96 -2.91 -0.02 2.75 16 9 C 0.04 1.58 3.16 71.24 0.23 1.81 16 10 S -0.13 -5.16 20.55 -56.49 -1.16 -6.33 16 11 C -0.12 -4.12 6.12 22.71 0.14 -3.98 16 12 C -0.13 -4.13 9.36 22.39 0.21 -3.92 16 13 C -0.11 -2.79 10.04 22.28 0.22 -2.57 16 14 C -0.11 -2.59 10.04 22.29 0.22 -2.37 16 15 C -0.13 -3.67 8.72 22.37 0.20 -3.48 16 16 C 0.15 4.58 6.44 38.21 0.25 4.83 16 17 N -0.65 -17.49 5.17 -303.01 -1.57 -19.05 16 18 C 0.52 14.30 6.93 87.66 0.61 14.91 16 19 O -0.53 -18.41 13.75 15.11 0.21 -18.20 16 20 C 0.07 1.52 4.05 30.43 0.12 1.64 16 21 H 0.15 2.25 8.14 -2.38 -0.02 2.23 16 22 C -0.10 -1.90 6.64 30.73 0.20 -1.70 16 23 C -0.18 -3.73 6.27 -19.53 -0.12 -3.85 16 24 C -0.08 -1.21 10.03 22.18 0.22 -0.99 16 25 C -0.14 -1.86 10.07 22.31 0.22 -1.64 16 26 C -0.08 -1.10 10.02 22.21 0.22 -0.88 16 27 C -0.15 -2.70 10.06 22.45 0.23 -2.47 16 28 C 0.07 1.67 7.04 22.68 0.16 1.83 16 29 O -0.30 -8.09 10.39 -76.86 -0.80 -8.88 16 30 H 0.27 15.02 8.31 -92.71 -0.77 14.25 16 31 H 0.05 2.06 6.80 -2.39 -0.02 2.04 16 32 H 0.05 2.06 7.18 -2.39 -0.02 2.05 16 33 H 0.12 4.02 5.88 -2.91 -0.02 4.00 16 34 H 0.15 2.87 8.06 -2.91 -0.02 2.84 16 35 H 0.16 2.76 8.06 -2.91 -0.02 2.73 16 36 H 0.14 4.24 5.79 -2.91 -0.02 4.23 16 37 H 0.42 10.00 7.65 -92.71 -0.71 9.29 16 38 H 0.09 1.88 7.92 -2.38 -0.02 1.86 16 39 H 0.13 1.82 8.14 -2.39 -0.02 1.80 16 40 H 0.14 1.75 8.06 -2.91 -0.02 1.73 16 41 H 0.16 1.10 8.06 -2.91 -0.02 1.08 16 42 H 0.16 1.09 8.06 -2.91 -0.02 1.06 16 43 H 0.14 2.15 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -72.11 374.29 3.20 -68.91 By element: Atomic # 1 Polarization: 25.57 SS G_CDS: 0.30 Total: 25.86 kcal Atomic # 6 Polarization: -33.89 SS G_CDS: 4.04 Total: -29.85 kcal Atomic # 7 Polarization: -72.91 SS G_CDS: -1.27 Total: -74.18 kcal Atomic # 8 Polarization: -26.49 SS G_CDS: -0.59 Total: -27.08 kcal Atomic # 14 Polarization: 40.79 SS G_CDS: 1.88 Total: 42.67 kcal Atomic # 16 Polarization: -5.16 SS G_CDS: -1.16 Total: -6.33 kcal Total: -72.11 3.20 -68.91 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095953545.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.667 kcal (2) G-P(sol) polarization free energy of solvation -72.108 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.240 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds