Wall clock time and date at job start Tue Mar 31 2020 05:00:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31407 * 1 3 3 Si 1.86801 * 119.99936 * 2 1 4 4 H 1.48503 * 109.47063 * 239.99961 * 3 2 1 5 5 H 1.48500 * 109.47237 * 359.97438 * 3 2 1 6 6 H 1.48499 * 109.47427 * 120.00339 * 3 2 1 7 7 C 1.38993 * 120.00282 * 180.02562 * 2 1 3 8 8 H 1.07994 * 120.00439 * 180.02562 * 7 2 1 9 9 N 1.36938 * 119.99555 * 359.97438 * 7 2 1 10 10 C 1.34775 * 119.99817 * 180.02562 * 9 7 2 11 11 O 1.21645 * 119.99912 * 359.97438 * 10 9 7 12 12 C 1.47353 * 120.00035 * 180.02562 * 10 9 7 13 13 C 1.36312 * 126.37250 * 179.97438 * 12 10 9 14 14 O 1.34311 * 107.11890 * 179.73657 * 13 12 10 15 15 C 1.34495 * 108.17748 * 0.38577 * 14 13 12 16 16 C 1.47780 * 125.48117 * 179.87400 * 15 14 13 17 17 C 1.39587 * 120.14444 * 179.67206 * 16 15 14 18 18 C 1.37902 * 119.89361 * 180.02562 * 17 16 15 19 19 C 1.38505 * 120.18629 * 0.02562 * 18 17 16 20 20 Br 1.89103 * 119.84813 * 180.02562 * 19 18 17 21 21 C 1.38360 * 120.30371 * 359.97438 * 19 18 17 22 22 C 1.38235 * 120.10199 * 0.02562 * 21 19 18 23 23 F 1.35099 * 120.09402 * 179.97438 * 22 21 19 24 24 N 1.30943 * 109.03050 * 359.60113 * 15 14 13 25 25 H 0.96994 * 119.99943 * 359.97438 * 1 2 3 26 26 H 0.96998 * 120.00230 * 0.02562 * 9 7 2 27 27 H 1.08004 * 126.43744 * 359.97438 * 13 12 10 28 28 H 1.08001 * 120.05878 * 359.97438 * 17 16 15 29 29 H 1.07989 * 119.90620 * 179.97438 * 18 17 16 30 30 H 1.07995 * 119.95054 * 180.28355 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3141 0.0000 0.0000 3 14 2.2481 1.6178 0.0000 4 1 3.1018 1.6964 -1.2125 5 1 1.2831 2.7465 -0.0006 6 1 3.1019 1.6965 1.2124 7 6 2.0091 -1.2037 -0.0005 8 1 3.0890 -1.2037 -0.0001 9 7 1.3244 -2.3896 -0.0005 10 6 1.9983 -3.5568 -0.0005 11 8 3.2147 -3.5567 -0.0010 12 6 1.2615 -4.8329 -0.0011 13 6 1.8078 -6.0817 -0.0017 14 8 0.7903 -6.9584 0.0038 15 6 -0.3616 -6.2642 -0.0009 16 6 -1.7174 -6.8522 0.0000 17 6 -2.8408 -6.0236 0.0017 18 6 -4.1036 -6.5778 0.0030 19 6 -4.2601 -7.9540 0.0034 20 35 -5.9962 -8.7037 0.0046 21 6 -3.1522 -8.7827 0.0018 22 6 -1.8807 -8.2403 0.0004 23 9 -0.7990 -9.0496 -0.0006 24 7 -0.0884 -4.9836 -0.0005 25 1 -0.4850 0.8400 0.0004 26 1 0.3544 -2.3896 -0.0005 27 1 2.8610 -6.3212 -0.0022 28 1 -2.7213 -4.9502 0.0026 29 1 -4.9728 -5.9370 0.0047 30 1 -3.2809 -9.8549 -0.0025 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000095995059.mol2 30 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:00:03 Heat of formation + Delta-G solvation = -28.793726 kcal Electronic energy + Delta-G solvation = -21560.811533 eV Core-core repulsion = 17704.718767 eV Total energy + Delta-G solvation = -3856.092766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 353.980 amu Computer time = 0.39 seconds Orbital eigenvalues (eV) -49.23721 -43.03007 -39.37805 -38.03455 -34.57195 -34.12105 -33.26824 -31.32475 -31.17445 -30.80987 -28.55438 -25.62855 -24.03268 -23.45331 -22.62311 -21.20787 -19.74370 -18.33803 -17.78229 -17.24828 -16.75168 -16.63795 -16.32552 -15.84363 -15.64362 -14.84704 -14.65795 -14.26100 -14.00719 -13.72321 -13.46337 -13.33108 -13.22535 -12.71189 -12.44390 -11.71716 -11.65737 -11.55196 -11.19486 -10.86459 -10.77181 -10.57924 -10.50796 -10.31060 -9.74264 -9.57332 -9.31962 -8.77417 -8.29163 -8.11050 -6.58249 -3.93606 0.09487 0.69189 1.06536 1.61614 2.39157 2.62652 3.13379 3.19233 3.21330 3.23355 3.63052 3.82321 4.05681 4.23119 4.27880 4.53452 4.66735 4.79664 5.03028 5.07608 5.23906 5.36475 5.55136 5.59658 5.74877 5.83898 5.90371 5.99788 6.23196 6.53339 7.39535 7.67418 7.92874 8.46700 8.99764 9.39288 9.91517 10.57624 Molecular weight = 353.98amu Principal moments of inertia in cm(-1) A = 0.016865 B = 0.002433 C = 0.002128 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1659.799271 B =11505.560146 C =13155.516915 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.882 5.882 2 C 0.027 3.973 3 Si 0.937 3.063 4 H -0.270 1.270 5 H -0.282 1.282 6 H -0.270 1.270 7 C -0.301 4.301 8 H 0.109 0.891 9 N -0.522 5.522 10 C 0.496 3.504 11 O -0.598 6.598 12 C -0.022 4.022 13 C -0.014 4.014 14 O -0.190 6.190 15 C 0.200 3.800 16 C -0.019 4.019 17 C -0.039 4.039 18 C -0.099 4.099 19 C -0.056 4.056 20 Br -0.034 7.034 21 C -0.129 4.129 22 C 0.130 3.870 23 F -0.118 7.118 24 N -0.432 5.432 25 H 0.277 0.723 26 H 0.403 0.597 27 H 0.231 0.769 28 H 0.163 0.837 29 H 0.150 0.850 30 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.912 -18.332 0.005 23.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.520 5.520 2 C -0.177 4.177 3 Si 0.763 3.237 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.196 1.196 7 C -0.431 4.431 8 H 0.127 0.873 9 N -0.155 5.155 10 C 0.282 3.718 11 O -0.485 6.485 12 C -0.145 4.145 13 C -0.087 4.087 14 O -0.075 6.075 15 C -0.004 4.004 16 C -0.021 4.021 17 C -0.059 4.059 18 C -0.119 4.119 19 C -0.136 4.136 20 Br 0.052 6.948 21 C -0.149 4.149 22 C 0.108 3.892 23 F -0.096 7.096 24 N -0.164 5.164 25 H 0.087 0.913 26 H 0.238 0.762 27 H 0.247 0.753 28 H 0.181 0.819 29 H 0.168 0.832 30 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges -15.326 -17.992 0.007 23.635 hybrid contribution 0.996 0.251 0.002 1.027 sum -14.331 -17.741 0.009 22.806 Atomic orbital electron populations 1.69634 1.06144 1.28922 1.47335 1.25434 0.95707 1.00185 0.96418 0.85818 0.78820 0.79705 0.79356 1.19564 1.20703 1.19561 1.19819 0.93734 0.82000 1.47532 0.87341 1.41794 1.10099 1.04220 1.59352 1.16259 0.86357 0.81430 0.87746 1.90643 1.12322 1.86244 1.59261 1.22420 0.88243 0.96808 1.07042 1.25313 0.93017 0.86917 1.03494 1.84431 1.14860 1.38557 1.69641 1.23161 0.86407 0.85592 1.05270 1.17448 0.87936 0.90859 1.05896 1.21249 0.89097 1.01562 0.93951 1.21163 0.98288 0.92776 0.99643 1.21717 0.91525 0.95113 1.05292 1.96787 1.16519 1.84017 1.97444 1.20924 0.89255 1.01365 1.03371 1.17503 0.83591 0.86691 1.01420 1.91589 1.52717 1.72034 1.93272 1.71045 1.14967 1.15099 1.15282 0.91285 0.76221 0.75302 0.81915 0.83196 0.83040 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -23.55 13.05 55.50 0.72 -22.83 16 2 C 0.03 0.71 5.50 -17.45 -0.10 0.62 16 3 Si 0.94 20.37 29.55 -169.99 -5.02 15.35 16 4 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 5 H -0.28 -5.95 7.11 56.52 0.40 -5.55 16 6 H -0.27 -5.83 7.11 56.52 0.40 -5.43 16 7 C -0.30 -8.35 9.68 -14.99 -0.15 -8.50 16 8 H 0.11 3.09 7.15 -52.49 -0.38 2.71 16 9 N -0.52 -13.86 5.28 -11.97 -0.06 -13.92 16 10 C 0.50 12.54 7.76 -12.55 -0.10 12.44 16 11 O -0.60 -16.45 16.46 5.24 0.09 -16.37 16 12 C -0.02 -0.47 6.99 -83.08 -0.58 -1.05 16 13 C -0.01 -0.24 11.94 30.04 0.36 0.12 16 14 O -0.19 -3.14 9.46 5.16 0.05 -3.09 16 15 C 0.20 3.34 7.86 -14.03 -0.11 3.23 16 16 C -0.02 -0.25 5.88 -104.92 -0.62 -0.87 16 17 C -0.04 -0.43 9.68 -39.20 -0.38 -0.81 16 18 C -0.10 -0.88 9.77 -39.61 -0.39 -1.27 16 19 C -0.06 -0.50 6.23 -39.44 -0.25 -0.74 16 20 Br -0.03 -0.26 33.69 -68.01 -2.29 -2.55 16 21 C -0.13 -1.19 9.75 -39.54 -0.39 -1.57 16 22 C 0.13 1.52 7.28 -39.01 -0.28 1.23 16 23 F -0.12 -1.51 15.84 2.25 0.04 -1.47 16 24 N -0.43 -8.40 10.65 -8.28 -0.09 -8.48 16 25 H 0.28 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.40 10.52 7.62 -40.82 -0.31 10.21 16 27 H 0.23 3.27 8.06 -52.48 -0.42 2.85 16 28 H 0.16 1.87 7.82 -52.49 -0.41 1.46 16 29 H 0.15 1.02 8.06 -52.49 -0.42 0.59 16 30 H 0.15 1.09 8.06 -52.49 -0.42 0.67 16 LS Contribution 308.68 15.07 4.65 4.65 Total: -1.00 -30.82 308.68 -6.39 -37.21 By element: Atomic # 1 Polarization: 10.17 SS G_CDS: -1.50 Total: 8.67 kcal Atomic # 6 Polarization: 5.80 SS G_CDS: -2.97 Total: 2.83 kcal Atomic # 7 Polarization: -45.80 SS G_CDS: 0.57 Total: -45.23 kcal Atomic # 8 Polarization: -19.60 SS G_CDS: 0.14 Total: -19.46 kcal Atomic # 9 Polarization: -1.51 SS G_CDS: 0.04 Total: -1.47 kcal Atomic # 14 Polarization: 20.37 SS G_CDS: -5.02 Total: 15.35 kcal Atomic # 35 Polarization: -0.26 SS G_CDS: -2.29 Total: -2.55 kcal Total LS contribution 4.65 Total: 4.65 kcal Total: -30.82 -6.39 -37.21 kcal The number of atoms in the molecule is 30 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000095995059.mol2 30 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 8.414 kcal (2) G-P(sol) polarization free energy of solvation -30.820 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.208 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.794 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.39 seconds