Wall clock time and date at job start Tue Mar 31 2020 05:58:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42909 * 1 3 3 C 1.42891 * 113.99887 * 2 1 4 4 C 1.53006 * 109.46858 * 180.02562 * 3 2 1 5 5 C 1.53007 * 109.47047 * 174.69351 * 4 3 2 6 6 H 1.08997 * 109.47063 * 307.04055 * 5 4 3 7 7 C 1.53007 * 109.46840 * 67.04327 * 5 4 3 8 8 C 1.50698 * 109.46578 * 183.20043 * 7 5 4 9 9 C 1.38264 * 119.99636 * 86.34256 * 8 7 5 10 10 C 1.38225 * 120.02236 * 179.72069 * 9 8 7 11 11 C 1.38232 * 120.00663 * 0.25285 * 10 9 8 12 12 C 1.38304 * 119.99262 * 359.97438 * 11 10 9 13 13 Br 1.89107 * 120.01054 * 179.97438 * 12 11 10 14 14 C 1.38200 * 119.99810 * 266.56821 * 8 7 5 15 15 C 1.50694 * 109.46730 * 187.03929 * 5 4 3 16 16 O 1.21295 * 120.00541 * 308.30507 * 15 5 4 17 17 N 1.34784 * 119.99769 * 128.30814 * 15 5 4 18 18 C 1.37095 * 120.00130 * 179.97438 * 17 15 5 19 19 H 1.08000 * 119.99775 * 0.02562 * 18 17 15 20 20 C 1.38952 * 120.00361 * 179.97438 * 18 17 15 21 21 N 1.31405 * 120.00199 * 180.02562 * 20 18 17 22 22 Si 1.86797 * 119.99485 * 0.02562 * 20 18 17 23 23 H 1.48498 * 109.47332 * 89.99880 * 22 20 18 24 24 H 1.48500 * 109.47000 * 210.00058 * 22 20 18 25 25 H 1.48504 * 109.47551 * 329.99651 * 22 20 18 26 26 H 1.08992 * 109.47092 * 59.99771 * 1 2 3 27 27 H 1.09002 * 109.47160 * 180.02562 * 1 2 3 28 28 H 1.09006 * 109.46656 * 299.99953 * 1 2 3 29 29 H 1.08995 * 109.47742 * 60.00406 * 3 2 1 30 30 H 1.09000 * 109.47395 * 299.99471 * 3 2 1 31 31 H 1.08999 * 109.47360 * 54.69252 * 4 3 2 32 32 H 1.09004 * 109.46655 * 294.68943 * 4 3 2 33 33 H 1.08988 * 109.47119 * 63.20040 * 7 5 4 34 34 H 1.08998 * 109.46749 * 303.19632 * 7 5 4 35 35 H 1.08000 * 119.99042 * 359.97438 * 9 8 7 36 36 H 1.07999 * 119.99446 * 180.27211 * 10 9 8 37 37 H 1.07999 * 120.00726 * 179.97438 * 11 10 9 38 38 H 1.07999 * 119.99822 * 0.03121 * 14 8 7 39 39 H 0.96995 * 119.99648 * 359.97438 * 17 15 5 40 40 H 0.97003 * 119.99818 * 179.97438 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1573 2.5762 -0.1341 6 1 3.7331 3.0820 -1.0013 7 6 3.8607 3.3903 1.1270 8 6 4.4051 4.7859 0.9634 9 6 3.6396 5.7587 0.3475 10 6 4.1361 7.0405 0.2023 11 6 5.4004 7.3490 0.6682 12 6 6.1684 6.3751 1.2801 13 35 7.8985 6.7964 1.9170 14 6 5.6713 5.0922 1.4248 15 6 5.6484 2.4454 -0.3084 16 8 6.2943 1.7790 0.4727 17 7 6.2645 3.0690 -1.3323 18 6 7.6211 2.9505 -1.4906 19 1 8.1961 2.3571 -0.7952 20 6 8.2561 3.5929 -2.5464 21 7 9.5564 3.4789 -2.6985 22 14 7.2614 4.6186 -3.7496 23 1 7.1908 6.0204 -3.2648 24 1 7.9138 4.5883 -5.0833 25 1 5.8886 4.0625 -3.8575 26 1 -0.3633 0.5138 -0.8899 27 1 -0.3633 -1.0277 0.0005 28 1 -0.3633 0.5139 0.8901 29 1 1.6887 1.8463 0.8899 30 1 1.6887 1.8463 -0.8900 31 1 3.8505 0.5639 -0.8395 32 1 3.8641 0.7277 0.9329 33 1 4.3333 2.9144 1.9862 34 1 2.7832 3.4367 1.2844 35 1 2.6517 5.5180 -0.0166 36 1 3.5360 7.8011 -0.2750 37 1 5.7885 8.3504 0.5543 38 1 6.2708 4.3312 1.9021 39 1 5.7479 3.6016 -1.9570 40 1 9.9996 3.9271 -3.4358 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096420723.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:48 Heat of formation + Delta-G solvation = -66.730338 kcal Electronic energy + Delta-G solvation = -23745.804075 eV Core-core repulsion = 20185.474086 eV Total energy + Delta-G solvation = -3560.329989 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 355.057 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -39.73426 -38.45844 -37.80309 -34.95200 -33.84528 -32.22096 -31.59572 -31.52644 -29.11580 -28.28566 -26.24738 -25.62969 -23.92271 -22.34164 -21.49865 -20.86699 -19.18407 -18.07340 -16.75338 -16.60588 -16.16557 -15.88588 -15.21397 -15.01949 -14.89627 -14.66950 -14.18620 -13.73220 -13.41687 -13.33737 -12.95483 -12.88598 -12.78474 -12.43927 -12.03042 -11.94821 -11.64037 -11.53932 -11.19278 -11.06222 -10.94429 -10.79234 -10.69662 -10.56166 -10.46901 -9.98078 -9.94430 -9.70749 -9.54054 -8.69424 -8.51306 -8.40463 -8.14633 -6.28709 -3.78640 1.24316 1.43700 1.89712 3.03235 3.08453 3.16268 3.55262 3.70671 3.88800 4.12652 4.58338 4.74976 4.90883 5.00502 5.08150 5.14492 5.18146 5.24000 5.27464 5.29585 5.40025 5.42595 5.47806 5.51394 5.53742 5.64674 5.74227 5.88582 6.03123 6.09816 6.11207 6.31155 6.38909 6.40681 6.45896 6.66339 6.96063 7.11027 7.58949 8.17566 8.61057 8.97719 9.45871 9.84745 10.84349 Molecular weight = 355.06amu Principal moments of inertia in cm(-1) A = 0.009033 B = 0.004647 C = 0.003634 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3098.889947 B = 6024.468264 C = 7702.806109 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.391 6.391 3 C 0.061 3.939 4 C -0.101 4.101 5 C -0.091 4.091 6 H 0.075 0.925 7 C -0.068 4.068 8 C -0.078 4.078 9 C -0.107 4.107 10 C -0.120 4.120 11 C -0.099 4.099 12 C -0.079 4.079 13 Br -0.052 7.052 14 C -0.064 4.064 15 C 0.457 3.543 16 O -0.576 6.576 17 N -0.581 5.581 18 C -0.301 4.301 19 H 0.120 0.880 20 C 0.047 3.953 21 N -0.878 5.878 22 Si 0.869 3.131 23 H -0.269 1.269 24 H -0.276 1.276 25 H -0.270 1.270 26 H 0.039 0.961 27 H 0.083 0.917 28 H 0.039 0.961 29 H 0.051 0.949 30 H 0.048 0.952 31 H 0.076 0.924 32 H 0.083 0.917 33 H 0.086 0.914 34 H 0.077 0.923 35 H 0.125 0.875 36 H 0.127 0.873 37 H 0.128 0.872 38 H 0.137 0.863 39 H 0.369 0.631 40 H 0.273 0.727 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.948 7.416 6.339 18.695 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.310 6.310 3 C -0.015 4.015 4 C -0.139 4.139 5 C -0.114 4.114 6 H 0.094 0.906 7 C -0.105 4.105 8 C -0.079 4.079 9 C -0.126 4.126 10 C -0.138 4.138 11 C -0.118 4.118 12 C -0.159 4.159 13 Br 0.034 6.966 14 C -0.083 4.083 15 C 0.243 3.757 16 O -0.459 6.459 17 N -0.218 5.218 18 C -0.430 4.430 19 H 0.138 0.862 20 C -0.156 4.156 21 N -0.517 5.517 22 Si 0.696 3.304 23 H -0.194 1.194 24 H -0.202 1.202 25 H -0.195 1.195 26 H 0.058 0.942 27 H 0.102 0.898 28 H 0.058 0.942 29 H 0.069 0.931 30 H 0.066 0.934 31 H 0.094 0.906 32 H 0.101 0.899 33 H 0.104 0.896 34 H 0.096 0.904 35 H 0.143 0.857 36 H 0.145 0.855 37 H 0.146 0.854 38 H 0.155 0.845 39 H 0.202 0.798 40 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges -14.516 7.019 6.970 17.566 hybrid contribution -1.143 1.118 -1.436 2.149 sum -15.659 8.137 5.534 18.495 Atomic orbital electron populations 1.22718 0.81453 1.02552 0.99773 1.87905 1.19318 1.28376 1.95375 1.22671 0.94517 0.84350 0.99991 1.21317 0.91653 0.96085 1.04804 1.21128 0.95789 0.96067 0.98382 0.90640 1.20626 1.00666 0.90806 0.98450 1.19884 0.94047 0.95820 0.98160 1.21104 0.99872 0.92927 0.98656 1.21040 0.95473 0.96856 1.00477 1.21057 0.94333 0.98752 0.97707 1.21771 0.92694 0.96726 1.04706 1.96708 1.19113 1.94089 1.86718 1.21147 0.94935 0.94546 0.97721 1.19475 0.87947 0.84474 0.83848 1.90560 1.66488 1.43633 1.45267 1.42283 1.08749 1.45166 1.25578 1.19408 0.80810 1.30118 1.12622 0.86234 1.24972 0.95508 0.97657 0.97461 1.69610 1.07811 1.42976 1.31345 0.86818 0.80132 0.81568 0.81923 1.19426 1.20163 1.19543 0.94240 0.89820 0.94228 0.93109 0.93417 0.90562 0.89857 0.89574 0.90417 0.85720 0.85513 0.85450 0.84542 0.79845 0.91680 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.28 11.01 101.05 1.11 1.39 16 2 O -0.39 -5.06 10.70 -35.23 -0.38 -5.44 16 3 C 0.06 0.72 5.61 37.16 0.21 0.93 16 4 C -0.10 -1.50 4.81 -26.72 -0.13 -1.62 16 5 C -0.09 -1.45 2.21 -91.77 -0.20 -1.65 16 6 H 0.08 1.06 7.93 -51.93 -0.41 0.65 16 7 C -0.07 -0.92 4.69 -27.88 -0.13 -1.06 16 8 C -0.08 -1.15 4.75 -104.63 -0.50 -1.64 16 9 C -0.11 -1.33 9.72 -39.58 -0.38 -1.72 16 10 C -0.12 -1.47 10.05 -39.59 -0.40 -1.87 16 11 C -0.10 -1.39 9.79 -39.56 -0.39 -1.77 16 12 C -0.08 -1.30 6.22 -39.52 -0.25 -1.55 16 13 Br -0.05 -0.85 33.70 -68.01 -2.29 -3.14 16 14 C -0.06 -1.09 8.72 -39.56 -0.34 -1.43 16 15 C 0.46 9.99 5.39 -10.98 -0.06 9.93 16 16 O -0.58 -14.91 16.38 5.54 0.09 -14.81 16 17 N -0.58 -13.71 5.09 -10.96 -0.06 -13.77 16 18 C -0.30 -8.42 10.16 -14.93 -0.15 -8.57 16 19 H 0.12 3.83 7.39 -52.49 -0.39 3.45 16 20 C 0.05 1.30 5.50 -17.47 -0.10 1.21 16 21 N -0.88 -25.70 13.96 55.50 0.77 -24.93 16 22 Si 0.87 19.76 27.74 -169.99 -4.71 15.05 16 23 H -0.27 -6.05 7.11 56.52 0.40 -5.64 16 24 H -0.28 -6.28 7.11 56.52 0.40 -5.88 16 25 H -0.27 -5.63 6.52 56.52 0.37 -5.26 16 26 H 0.04 0.31 8.14 -51.93 -0.42 -0.12 16 27 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 28 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 29 H 0.05 0.51 6.82 -51.93 -0.35 0.16 16 30 H 0.05 0.50 8.14 -51.93 -0.42 0.08 16 31 H 0.08 1.24 8.13 -51.93 -0.42 0.82 16 32 H 0.08 1.33 8.13 -51.93 -0.42 0.91 16 33 H 0.09 1.27 8.06 -51.94 -0.42 0.85 16 34 H 0.08 0.80 6.58 -51.93 -0.34 0.46 16 35 H 0.12 1.18 8.06 -52.49 -0.42 0.76 16 36 H 0.13 1.18 8.06 -52.49 -0.42 0.75 16 37 H 0.13 1.56 8.06 -52.49 -0.42 1.13 16 38 H 0.14 2.59 8.06 -52.49 -0.42 2.17 16 39 H 0.37 7.95 5.62 -40.82 -0.23 7.73 16 40 H 0.27 7.42 8.31 -40.82 -0.34 7.08 16 LS Contribution 358.69 15.07 5.41 5.41 Total: -1.00 -32.47 358.69 -8.41 -40.89 By element: Atomic # 1 Polarization: 15.72 SS G_CDS: -5.54 Total: 10.18 kcal Atomic # 6 Polarization: -7.72 SS G_CDS: -1.71 Total: -9.43 kcal Atomic # 7 Polarization: -39.41 SS G_CDS: 0.72 Total: -38.69 kcal Atomic # 8 Polarization: -19.97 SS G_CDS: -0.29 Total: -20.25 kcal Atomic # 14 Polarization: 19.76 SS G_CDS: -4.71 Total: 15.05 kcal Atomic # 35 Polarization: -0.85 SS G_CDS: -2.29 Total: -3.14 kcal Total LS contribution 5.41 Total: 5.41 kcal Total: -32.47 -8.41 -40.89 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096420723.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -25.844 kcal (2) G-P(sol) polarization free energy of solvation -32.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.318 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.886 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds