Wall clock time and date at job start Tue Mar 31 2020 05:58:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42898 * 114.00102 * 2 1 4 4 C 1.53002 * 109.46663 * 180.02562 * 3 2 1 5 5 C 1.53004 * 109.47066 * 181.21963 * 4 3 2 6 6 H 1.08995 * 109.47395 * 185.86641 * 5 4 3 7 7 C 1.53005 * 109.47155 * 65.86444 * 5 4 3 8 8 C 1.50697 * 109.47102 * 65.00421 * 7 5 4 9 9 C 1.38259 * 119.99726 * 89.99874 * 8 7 5 10 10 C 1.38222 * 120.02195 * 180.02562 * 9 8 7 11 11 C 1.38240 * 120.00872 * 0.02562 * 10 9 8 12 12 C 1.38306 * 119.98884 * 359.97438 * 11 10 9 13 13 Br 1.89102 * 120.00678 * 179.72041 * 12 11 10 14 14 C 1.38199 * 119.99170 * 269.99818 * 8 7 5 15 15 C 1.50703 * 109.46667 * 305.86841 * 5 4 3 16 16 O 1.21290 * 120.00155 * 118.19996 * 15 5 4 17 17 N 1.34770 * 119.99795 * 298.19748 * 15 5 4 18 18 C 1.37108 * 120.00216 * 174.63013 * 17 15 5 19 19 H 1.08000 * 119.99497 * 359.97438 * 18 17 15 20 20 C 1.38947 * 120.00134 * 180.02562 * 18 17 15 21 21 N 1.31415 * 119.99489 * 180.02562 * 20 18 17 22 22 Si 1.86794 * 120.00173 * 359.97438 * 20 18 17 23 23 H 1.48503 * 109.47079 * 89.99921 * 22 20 18 24 24 H 1.48501 * 109.47311 * 210.00202 * 22 20 18 25 25 H 1.48504 * 109.47432 * 330.00162 * 22 20 18 26 26 H 1.08993 * 109.47427 * 180.02562 * 1 2 3 27 27 H 1.09007 * 109.46856 * 299.99920 * 1 2 3 28 28 H 1.08997 * 109.47101 * 59.99579 * 1 2 3 29 29 H 1.09001 * 109.47272 * 60.00379 * 3 2 1 30 30 H 1.08998 * 109.47428 * 299.99879 * 3 2 1 31 31 H 1.08998 * 109.47628 * 61.21549 * 4 3 2 32 32 H 1.09007 * 109.47009 * 301.21039 * 4 3 2 33 33 H 1.09007 * 109.46940 * 305.00214 * 7 5 4 34 34 H 1.09001 * 109.46824 * 185.00419 * 7 5 4 35 35 H 1.08007 * 119.98782 * 359.97438 * 9 8 7 36 36 H 1.08001 * 119.99301 * 180.02562 * 10 9 8 37 37 H 1.07999 * 120.00207 * 179.97438 * 11 10 9 38 38 H 1.07994 * 120.00761 * 0.02562 * 14 8 7 39 39 H 0.96999 * 120.00821 * 354.62731 * 17 15 5 40 40 H 0.97005 * 119.99218 * 180.02562 * 21 20 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 -0.0006 5 6 4.1579 2.5818 0.0301 6 1 5.2397 2.5002 -0.0754 7 6 3.8249 3.2594 1.3609 8 6 4.4831 2.5050 2.4872 9 6 5.7584 2.8481 2.8965 10 6 6.3629 2.1562 3.9292 11 6 5.6927 1.1204 4.5529 12 6 4.4169 0.7768 4.1437 13 35 3.5028 -0.6452 4.9912 14 6 3.8119 1.4704 3.1108 15 6 3.6032 3.4038 -1.1048 16 8 2.9727 4.4132 -0.8708 17 7 3.8077 3.0172 -2.3795 18 6 3.2118 3.7015 -3.4074 19 1 2.5782 4.5500 -3.1954 20 6 3.4222 3.3026 -4.7217 21 7 2.8514 3.9589 -5.7068 22 14 4.5175 1.8346 -5.0882 23 1 3.6970 0.5969 -5.1056 24 1 5.1647 2.0181 -6.4121 25 1 5.5616 1.7215 -4.0383 26 1 -0.3634 -1.0276 0.0005 27 1 -0.3633 0.5139 0.8901 28 1 -0.3633 0.5139 -0.8899 29 1 1.6887 1.8464 0.8900 30 1 1.6887 1.8464 -0.8900 31 1 3.8583 0.6626 -0.9015 32 1 3.8559 0.6247 0.8781 33 1 2.7447 3.2614 1.5073 34 1 4.1917 4.2858 1.3478 35 1 6.2828 3.6565 2.4086 36 1 7.3589 2.4248 4.2488 37 1 6.1652 0.5795 5.3594 38 1 2.8160 1.2022 2.7907 39 1 4.3765 2.2550 -2.5700 40 1 2.9980 3.6801 -6.6243 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096420724.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:51 Heat of formation + Delta-G solvation = -66.896371 kcal Electronic energy + Delta-G solvation = -23616.743635 eV Core-core repulsion = 20056.406446 eV Total energy + Delta-G solvation = -3560.337189 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 355.057 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.00543 -38.74235 -37.48904 -35.03319 -33.98864 -32.53021 -31.80395 -31.16921 -29.53257 -28.30148 -26.21698 -25.51790 -23.84496 -22.59989 -22.20884 -20.67905 -19.06217 -18.01615 -16.96454 -16.55036 -15.99847 -15.91740 -15.45272 -15.06108 -14.88476 -14.62825 -14.13914 -13.98076 -13.63421 -13.30635 -13.22609 -13.06458 -12.66609 -12.39406 -12.24545 -12.08778 -11.57594 -11.32369 -11.21018 -11.19433 -11.05776 -10.97425 -10.73303 -10.61310 -10.48155 -10.40562 -10.00820 -9.62194 -9.40012 -8.97687 -8.81515 -8.50449 -8.22785 -6.35968 -3.87357 0.96322 1.13699 1.48046 3.01094 3.06177 3.14133 3.45488 3.65025 3.92454 4.07243 4.41681 4.64645 4.77890 4.94887 4.99749 5.09463 5.16914 5.22805 5.27926 5.36745 5.41578 5.47233 5.55657 5.58273 5.70867 5.74551 5.77372 5.83614 5.94625 6.03428 6.06293 6.17119 6.19448 6.29401 6.42983 6.51757 6.69460 7.34554 7.51818 8.08882 8.53131 8.89119 9.37703 9.75232 10.76808 Molecular weight = 355.06amu Principal moments of inertia in cm(-1) A = 0.015045 B = 0.003135 C = 0.002854 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1860.658285 B = 8930.261215 C = 9807.948278 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.393 6.393 3 C 0.057 3.943 4 C -0.112 4.112 5 C -0.094 4.094 6 H 0.091 0.909 7 C -0.063 4.063 8 C -0.065 4.065 9 C -0.101 4.101 10 C -0.113 4.113 11 C -0.101 4.101 12 C -0.088 4.088 13 Br -0.058 7.058 14 C -0.086 4.086 15 C 0.453 3.547 16 O -0.577 6.577 17 N -0.584 5.584 18 C -0.307 4.307 19 H 0.120 0.880 20 C 0.044 3.956 21 N -0.879 5.879 22 Si 0.875 3.125 23 H -0.269 1.269 24 H -0.276 1.276 25 H -0.269 1.269 26 H 0.081 0.919 27 H 0.038 0.962 28 H 0.043 0.957 29 H 0.050 0.950 30 H 0.063 0.937 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.082 0.918 34 H 0.087 0.913 35 H 0.130 0.870 36 H 0.130 0.870 37 H 0.128 0.872 38 H 0.133 0.867 39 H 0.371 0.629 40 H 0.274 0.726 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.471 -10.327 21.168 23.974 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.313 6.313 3 C -0.020 4.020 4 C -0.150 4.150 5 C -0.116 4.116 6 H 0.109 0.891 7 C -0.100 4.100 8 C -0.066 4.066 9 C -0.119 4.119 10 C -0.132 4.132 11 C -0.121 4.121 12 C -0.167 4.167 13 Br 0.027 6.973 14 C -0.106 4.106 15 C 0.239 3.761 16 O -0.460 6.460 17 N -0.222 5.222 18 C -0.436 4.436 19 H 0.137 0.863 20 C -0.159 4.159 21 N -0.518 5.518 22 Si 0.701 3.299 23 H -0.194 1.194 24 H -0.201 1.201 25 H -0.194 1.194 26 H 0.100 0.900 27 H 0.056 0.944 28 H 0.062 0.938 29 H 0.068 0.932 30 H 0.082 0.918 31 H 0.092 0.908 32 H 0.096 0.904 33 H 0.101 0.899 34 H 0.106 0.894 35 H 0.148 0.852 36 H 0.147 0.853 37 H 0.146 0.854 38 H 0.151 0.849 39 H 0.204 0.796 40 H 0.084 0.916 Dipole moment (debyes) X Y Z Total from point charges 3.754 -10.326 21.383 24.041 hybrid contribution 0.867 -0.643 -0.745 1.311 sum 4.621 -10.970 20.638 23.825 Atomic orbital electron populations 1.22700 0.81340 1.02227 1.00161 1.87807 1.19499 1.28430 1.95520 1.22688 0.93695 0.84248 1.01323 1.21541 0.93920 0.95948 1.03555 1.21172 1.01212 0.94780 0.94438 0.89133 1.20459 1.01310 0.98741 0.89537 1.20061 0.94409 0.95453 0.96712 1.21280 0.94557 0.99637 0.96465 1.21137 1.00035 0.95642 0.96392 1.21054 0.93035 0.97832 1.00187 1.21761 0.96724 0.97812 1.00388 1.96707 1.76898 1.44440 1.79208 1.21120 1.00500 0.94799 0.94144 1.19612 0.85724 0.87456 0.83298 1.90564 1.44846 1.26791 1.83836 1.42238 1.44612 1.29478 1.05883 1.19438 1.26641 1.13508 0.83984 0.86253 1.25032 0.97614 0.97931 0.95332 1.69624 1.42911 1.39664 0.99615 0.86731 0.80964 0.83216 0.78947 1.19388 1.20084 1.19397 0.89998 0.94353 0.93816 0.93228 0.91839 0.90845 0.90405 0.89926 0.89433 0.85161 0.85257 0.85361 0.84887 0.79554 0.91551 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.42 11.01 101.05 1.11 1.53 16 2 O -0.39 -6.24 10.70 -35.23 -0.38 -6.62 16 3 C 0.06 0.92 5.38 37.16 0.20 1.12 16 4 C -0.11 -1.68 5.03 -26.73 -0.13 -1.81 16 5 C -0.09 -1.48 2.49 -91.77 -0.23 -1.71 16 6 H 0.09 1.27 8.14 -51.93 -0.42 0.85 16 7 C -0.06 -0.89 4.05 -27.88 -0.11 -1.00 16 8 C -0.07 -0.78 4.72 -104.63 -0.49 -1.28 16 9 C -0.10 -1.06 9.70 -39.58 -0.38 -1.44 16 10 C -0.11 -1.04 10.05 -39.59 -0.40 -1.44 16 11 C -0.10 -0.99 9.79 -39.56 -0.39 -1.37 16 12 C -0.09 -0.97 6.22 -39.52 -0.25 -1.22 16 13 Br -0.06 -0.61 33.70 -68.01 -2.29 -2.90 16 14 C -0.09 -1.02 7.61 -39.56 -0.30 -1.32 16 15 C 0.45 9.70 5.56 -10.99 -0.06 9.64 16 16 O -0.58 -14.52 15.53 5.55 0.09 -14.43 16 17 N -0.58 -13.51 5.00 -10.96 -0.05 -13.56 16 18 C -0.31 -8.46 10.16 -14.93 -0.15 -8.61 16 19 H 0.12 3.75 7.40 -52.49 -0.39 3.36 16 20 C 0.04 1.20 5.50 -17.47 -0.10 1.10 16 21 N -0.88 -25.28 13.96 55.50 0.77 -24.50 16 22 Si 0.88 19.28 27.74 -169.99 -4.71 14.56 16 23 H -0.27 -5.84 7.11 56.52 0.40 -5.44 16 24 H -0.28 -6.08 7.11 56.52 0.40 -5.68 16 25 H -0.27 -5.42 6.52 56.52 0.37 -5.05 16 26 H 0.08 0.88 8.14 -51.93 -0.42 0.45 16 27 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 28 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 29 H 0.05 0.74 6.07 -51.93 -0.32 0.43 16 30 H 0.06 1.22 7.10 -51.93 -0.37 0.85 16 31 H 0.07 1.12 8.01 -51.93 -0.42 0.71 16 32 H 0.08 1.06 5.86 -51.92 -0.30 0.75 16 33 H 0.08 1.22 6.30 -51.93 -0.33 0.89 16 34 H 0.09 1.28 7.93 -51.93 -0.41 0.87 16 35 H 0.13 1.20 8.06 -52.48 -0.42 0.77 16 36 H 0.13 0.87 8.06 -52.49 -0.42 0.45 16 37 H 0.13 1.02 8.06 -52.49 -0.42 0.60 16 38 H 0.13 1.61 7.60 -52.49 -0.40 1.21 16 39 H 0.37 7.74 5.63 -40.82 -0.23 7.51 16 40 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 LS Contribution 351.56 15.07 5.30 5.30 Total: -1.00 -31.06 351.56 -8.25 -39.31 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: -5.29 Total: 10.66 kcal Atomic # 6 Polarization: -6.14 SS G_CDS: -1.68 Total: -7.82 kcal Atomic # 7 Polarization: -38.79 SS G_CDS: 0.72 Total: -38.07 kcal Atomic # 8 Polarization: -20.76 SS G_CDS: -0.29 Total: -21.05 kcal Atomic # 14 Polarization: 19.28 SS G_CDS: -4.71 Total: 14.56 kcal Atomic # 35 Polarization: -0.61 SS G_CDS: -2.29 Total: -2.90 kcal Total LS contribution 5.30 Total: 5.30 kcal Total: -31.06 -8.25 -39.31 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096420724.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -27.584 kcal (2) G-P(sol) polarization free energy of solvation -31.063 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.249 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.312 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.896 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds