Wall clock time and date at job start Tue Mar 31 2020 05:42:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53007 * 1 3 3 O 1.42901 * 109.47233 * 2 1 4 4 C 1.42895 * 114.00144 * 179.97438 * 3 2 1 5 5 H 1.09000 * 109.47245 * 330.00487 * 4 3 2 6 6 C 1.53002 * 109.46866 * 90.00062 * 4 3 2 7 7 C 1.50693 * 109.47418 * 209.99710 * 4 3 2 8 8 N 1.29027 * 124.91518 * 134.71723 * 7 4 3 9 9 C 1.31792 * 117.12373 * 179.81282 * 8 7 4 10 10 C 1.50694 * 122.74943 * 180.22692 * 9 8 7 11 11 N 1.46902 * 109.47249 * 275.24852 * 10 9 8 12 12 C 1.46901 * 111.00195 * 170.00083 * 11 10 9 13 13 C 1.50704 * 109.47145 * 284.39605 * 12 11 10 14 14 H 1.07997 * 119.99568 * 4.67043 * 13 12 11 15 15 C 1.37873 * 119.99852 * 184.67363 * 13 12 11 16 16 N 1.31507 * 120.00242 * 359.97438 * 15 13 12 17 17 Si 1.86803 * 119.99824 * 180.02562 * 15 13 12 18 18 H 1.48498 * 109.47090 * 0.02562 * 17 15 13 19 19 H 1.48497 * 109.47097 * 119.99864 * 17 15 13 20 20 H 1.48502 * 109.47307 * 239.99978 * 17 15 13 21 21 C 1.46901 * 111.00094 * 293.95456 * 11 10 9 22 22 C 1.53179 * 109.54347 * 288.76450 * 21 11 10 23 23 C 1.53093 * 109.16160 * 183.14767 * 22 21 11 24 24 O 1.42906 * 109.41257 * 57.61309 * 23 22 21 25 25 C 1.42902 * 114.09836 * 298.83795 * 24 23 22 26 26 C 1.53094 * 109.41212 * 61.15695 * 25 24 23 27 27 C 1.33640 * 114.49600 * 0.48247 * 9 8 7 28 28 S 1.70976 * 124.91615 * 315.03065 * 7 4 3 29 29 H 1.08997 * 109.46943 * 180.02562 * 1 2 3 30 30 H 1.08998 * 109.46898 * 299.99808 * 1 2 3 31 31 H 1.09001 * 109.47093 * 60.00061 * 1 2 3 32 32 H 1.09001 * 109.47093 * 119.99939 * 2 1 3 33 33 H 1.08998 * 109.46898 * 240.00192 * 2 1 3 34 34 H 1.09000 * 109.47734 * 60.00365 * 6 4 3 35 35 H 1.09005 * 109.47205 * 179.97438 * 6 4 3 36 36 H 1.09001 * 109.47372 * 299.99709 * 6 4 3 37 37 H 1.09000 * 109.47563 * 35.24569 * 10 9 8 38 38 H 1.08996 * 109.47451 * 155.25021 * 10 9 8 39 39 H 1.09005 * 109.46931 * 44.39253 * 12 11 10 40 40 H 1.09001 * 109.47508 * 164.39675 * 12 11 10 41 41 H 0.97009 * 120.00209 * 180.02562 * 16 15 13 42 42 H 1.09002 * 109.54046 * 49.03426 * 21 11 10 43 43 H 1.08995 * 109.52289 * 303.06348 * 22 21 11 44 44 H 1.09001 * 109.51899 * 63.24601 * 22 21 11 45 45 H 1.09003 * 109.48322 * 297.62785 * 23 22 21 46 46 H 1.09003 * 109.47923 * 177.59394 * 23 22 21 47 47 H 1.08995 * 109.47699 * 301.18024 * 25 24 23 48 48 H 1.08994 * 109.49066 * 181.14785 * 25 24 23 49 49 H 1.09002 * 109.51748 * 182.48442 * 26 25 24 50 50 H 1.08997 * 109.52351 * 62.30156 * 26 25 24 51 51 H 1.08003 * 126.03384 * 179.78499 * 27 9 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 8 2.0064 1.3473 0.0000 4 6 3.4309 1.4601 0.0006 5 1 3.8632 0.6016 0.5146 6 6 3.9399 1.5002 -1.4417 7 6 3.8343 2.7265 0.7109 8 7 4.7780 2.8136 1.5864 9 6 5.0041 4.0017 2.1100 10 6 6.0774 4.2485 3.1385 11 7 5.5561 3.9342 4.4755 12 6 6.6336 3.9334 5.4740 13 6 7.4495 2.6744 5.3316 14 1 7.2409 1.9838 4.5279 15 6 8.4621 2.4042 6.2274 16 7 8.7164 3.2454 7.2057 17 14 9.4740 0.8439 6.0504 18 1 8.9929 0.0725 4.8763 19 1 10.9026 1.1997 5.8567 20 1 9.3312 0.0195 7.2773 21 6 4.4864 4.8664 4.8560 22 6 5.0867 6.2467 5.1401 23 6 3.9769 7.1900 5.6114 24 8 3.3477 6.6412 6.7712 25 6 2.7277 5.3723 6.5533 26 6 3.7874 4.3559 6.1197 27 6 4.1998 4.9686 1.6579 28 16 3.1026 4.2542 0.4788 29 1 -0.3633 -1.0276 0.0005 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 1.8934 -0.5138 -0.8900 34 1 3.5077 2.3586 -1.9559 35 1 5.0265 1.5867 -1.4414 36 1 3.6482 0.5842 -1.9556 37 1 6.9376 3.6138 2.9256 38 1 6.3805 5.2949 3.1036 39 1 7.2744 4.8012 5.3177 40 1 6.2022 3.9756 6.4741 41 1 9.4291 3.0554 7.8358 42 1 3.7628 4.9420 4.0443 43 1 5.8462 6.1607 5.9171 44 1 5.5384 6.6417 4.2301 45 1 3.2383 7.3074 4.8183 46 1 4.4054 8.1620 5.8559 47 1 1.9729 5.4658 5.7726 48 1 2.2563 5.0346 7.4762 49 1 3.3098 3.3987 5.9105 50 1 4.5206 4.2317 6.9166 51 1 4.2194 6.0049 1.9614 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096421157.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:42:41 Heat of formation + Delta-G solvation = -44.609544 kcal Electronic energy + Delta-G solvation = -30410.379456 eV Core-core repulsion = 26436.864940 eV Total energy + Delta-G solvation = -3973.514516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.176 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.07796 -39.18603 -38.39529 -36.44370 -33.28994 -32.70384 -31.51452 -30.74903 -30.57854 -29.60471 -27.16031 -26.03663 -25.10392 -23.39851 -23.19754 -22.97583 -21.95545 -21.21869 -19.57444 -18.89554 -17.67252 -16.68908 -16.38608 -15.94986 -15.91397 -15.86771 -15.72394 -15.02521 -14.61034 -14.38968 -14.32763 -14.00150 -13.81923 -13.56370 -13.40819 -13.12666 -12.92904 -12.84876 -12.57838 -12.38056 -12.22107 -12.02986 -12.00109 -11.73324 -11.61616 -11.32820 -11.19935 -11.10481 -10.93745 -10.75860 -10.56906 -10.45734 -10.34395 -10.02224 -9.93066 -9.65995 -9.39579 -9.30746 -9.17971 -9.15368 -8.56473 -8.37745 -7.23799 -5.99003 -3.99419 0.82784 1.51808 1.92471 2.90871 3.30152 3.33458 3.41077 3.47403 4.12546 4.26899 4.46159 4.74457 4.83569 4.85736 4.91461 5.03772 5.08584 5.13089 5.15307 5.22762 5.30102 5.32422 5.33695 5.36657 5.48591 5.52014 5.55113 5.59458 5.63691 5.66282 5.70781 5.85532 5.86802 5.89847 5.93807 5.96748 6.09123 6.22814 6.31705 6.37538 6.56146 6.64393 6.77763 6.91258 7.22487 7.32287 7.44315 7.85691 8.00296 8.12544 8.18170 8.55589 9.09506 9.64622 11.11339 Molecular weight = 354.18amu Principal moments of inertia in cm(-1) A = 0.007619 B = 0.003674 C = 0.002881 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3673.974243 B = 7618.301365 C = 9715.408319 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.058 3.942 3 O -0.379 6.379 4 C 0.165 3.835 5 H 0.092 0.908 6 C -0.167 4.167 7 C 0.042 3.958 8 N -0.438 5.438 9 C 0.100 3.900 10 C 0.130 3.870 11 N -0.518 5.518 12 C 0.193 3.807 13 C -0.503 4.503 14 H 0.065 0.935 15 C 0.056 3.944 16 N -0.899 5.899 17 Si 0.894 3.106 18 H -0.272 1.272 19 H -0.286 1.286 20 H -0.285 1.285 21 C 0.083 3.917 22 C -0.192 4.192 23 C 0.069 3.931 24 O -0.385 6.385 25 C 0.064 3.936 26 C -0.146 4.146 27 C -0.267 4.267 28 S 0.125 5.875 29 H 0.071 0.929 30 H 0.064 0.936 31 H 0.062 0.938 32 H 0.053 0.947 33 H 0.051 0.949 34 H 0.066 0.934 35 H 0.074 0.926 36 H 0.068 0.932 37 H 0.100 0.900 38 H 0.041 0.959 39 H -0.008 1.008 40 H 0.041 0.959 41 H 0.260 0.740 42 H 0.067 0.933 43 H 0.085 0.915 44 H 0.065 0.935 45 H 0.042 0.958 46 H 0.087 0.913 47 H 0.043 0.957 48 H 0.090 0.910 49 H 0.074 0.926 50 H 0.083 0.917 51 H 0.172 0.828 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.076 1.237 -15.103 21.375 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C -0.019 4.019 3 O -0.299 6.299 4 C 0.104 3.896 5 H 0.110 0.890 6 C -0.225 4.225 7 C -0.236 4.236 8 N -0.154 5.154 9 C -0.033 4.033 10 C 0.000 4.000 11 N -0.241 5.241 12 C 0.069 3.931 13 C -0.542 4.542 14 H 0.083 0.917 15 C -0.145 4.145 16 N -0.539 5.539 17 Si 0.723 3.277 18 H -0.196 1.196 19 H -0.212 1.212 20 H -0.211 1.211 21 C -0.026 4.026 22 C -0.231 4.231 23 C -0.009 4.009 24 O -0.304 6.304 25 C -0.013 4.013 26 C -0.184 4.184 27 C -0.406 4.406 28 S 0.380 5.620 29 H 0.090 0.910 30 H 0.083 0.917 31 H 0.081 0.919 32 H 0.072 0.928 33 H 0.069 0.931 34 H 0.085 0.915 35 H 0.093 0.907 36 H 0.087 0.913 37 H 0.118 0.882 38 H 0.059 0.941 39 H 0.010 0.990 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.104 0.896 44 H 0.084 0.916 45 H 0.060 0.940 46 H 0.105 0.895 47 H 0.061 0.939 48 H 0.108 0.892 49 H 0.093 0.907 50 H 0.102 0.898 51 H 0.189 0.811 Dipole moment (debyes) X Y Z Total from point charges -15.804 0.901 -15.285 22.005 hybrid contribution 1.838 -0.186 0.449 1.902 sum -13.966 0.715 -14.835 20.387 Atomic orbital electron populations 1.21740 0.93532 1.02291 1.03210 1.22553 0.95652 0.83203 1.00476 1.87908 1.19626 1.27208 1.95109 1.20206 0.81910 0.92697 0.94775 0.88997 1.22276 1.02284 1.03104 0.94864 1.26619 0.97840 0.99094 1.00070 1.66041 1.16413 1.25591 1.07312 1.20424 0.98700 0.86102 0.98098 1.20569 0.93517 0.99190 0.86759 1.62266 1.13010 1.47404 1.01384 1.19816 0.86963 0.96264 0.90100 1.21245 1.14409 1.05869 1.12633 0.91701 1.24957 0.97452 0.96860 0.95263 1.69963 1.31639 1.36263 1.16060 0.86491 0.79787 0.83433 0.78037 1.19631 1.21214 1.21116 1.21709 0.94818 0.89508 0.96592 1.22934 0.99944 0.97818 1.02389 1.22469 0.93953 0.96538 0.87911 1.87894 1.72884 1.34955 1.34649 1.22582 0.94211 0.83590 1.00888 1.22239 0.98887 0.98678 0.98603 1.26955 1.02612 1.05138 1.05943 1.83756 1.35482 1.03404 1.39382 0.91018 0.91708 0.91866 0.92835 0.93109 0.91467 0.90728 0.91321 0.88217 0.94084 0.99049 0.94108 0.93067 0.91440 0.89642 0.91648 0.93992 0.89501 0.93912 0.89151 0.90724 0.89822 0.81087 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.12 10.28 37.16 0.38 -0.74 16 2 C 0.06 0.51 6.47 37.16 0.24 0.76 16 3 O -0.38 -4.44 9.82 -35.23 -0.35 -4.79 16 4 C 0.17 2.00 3.24 -27.89 -0.09 1.91 16 5 H 0.09 1.13 7.79 -51.93 -0.40 0.72 16 6 C -0.17 -1.58 9.51 37.16 0.35 -1.23 16 7 C 0.04 0.62 6.34 -13.46 -0.09 0.54 16 8 N -0.44 -7.80 10.53 -8.06 -0.08 -7.89 16 9 C 0.10 1.71 5.60 -84.22 -0.47 1.24 16 10 C 0.13 2.52 5.12 -4.98 -0.03 2.49 16 11 N -0.52 -10.95 4.36 -229.30 -1.00 -11.96 16 12 C 0.19 4.86 3.31 -4.97 -0.02 4.85 16 13 C -0.50 -14.07 8.61 -34.44 -0.30 -14.36 16 14 H 0.06 1.85 7.65 -52.49 -0.40 1.45 16 15 C 0.06 1.58 5.46 -17.82 -0.10 1.48 16 16 N -0.90 -26.58 13.29 55.43 0.74 -25.84 16 17 Si 0.89 21.89 29.54 -169.99 -5.02 16.87 16 18 H -0.27 -6.60 7.11 56.52 0.40 -6.19 16 19 H -0.29 -6.91 7.11 56.52 0.40 -6.51 16 20 H -0.28 -6.94 7.11 56.52 0.40 -6.53 16 21 C 0.08 1.48 2.12 -67.53 -0.14 1.34 16 22 C -0.19 -3.17 4.77 -26.59 -0.13 -3.30 16 23 C 0.07 0.98 6.84 37.21 0.25 1.24 16 24 O -0.39 -6.29 10.77 -35.23 -0.38 -6.67 16 25 C 0.06 0.96 6.84 37.21 0.25 1.21 16 26 C -0.15 -2.58 5.46 -26.59 -0.15 -2.73 16 27 C -0.27 -3.81 9.61 29.12 0.28 -3.53 16 28 S 0.13 1.61 23.01 -107.50 -2.47 -0.87 16 29 H 0.07 0.41 8.14 -51.93 -0.42 -0.02 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.05 0.49 8.08 -51.93 -0.42 0.07 16 33 H 0.05 0.37 7.87 -51.93 -0.41 -0.04 16 34 H 0.07 0.62 8.14 -51.93 -0.42 0.20 16 35 H 0.07 0.72 8.14 -51.93 -0.42 0.30 16 36 H 0.07 0.52 7.87 -51.93 -0.41 0.11 16 37 H 0.10 2.16 7.31 -51.93 -0.38 1.78 16 38 H 0.04 0.73 6.49 -51.93 -0.34 0.40 16 39 H -0.01 -0.22 7.26 -51.93 -0.38 -0.60 16 40 H 0.04 1.11 5.86 -51.93 -0.30 0.81 16 41 H 0.26 7.29 8.31 -40.82 -0.34 6.95 16 42 H 0.07 1.15 5.90 -51.93 -0.31 0.84 16 43 H 0.08 1.68 6.57 -51.93 -0.34 1.34 16 44 H 0.06 1.00 6.77 -51.93 -0.35 0.65 16 45 H 0.04 0.53 8.14 -51.93 -0.42 0.11 16 46 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 47 H 0.04 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.09 1.20 8.14 -51.93 -0.42 0.77 16 49 H 0.07 1.32 8.14 -51.93 -0.42 0.90 16 50 H 0.08 1.71 6.19 -51.93 -0.32 1.39 16 51 H 0.17 2.08 8.06 -52.48 -0.42 1.65 16 LS Contribution 411.62 15.07 6.20 6.20 Total: -1.00 -31.62 411.62 -10.65 -42.26 By element: Atomic # 1 Polarization: 10.05 SS G_CDS: -8.55 Total: 1.51 kcal Atomic # 6 Polarization: -9.10 SS G_CDS: 0.27 Total: -8.83 kcal Atomic # 7 Polarization: -45.34 SS G_CDS: -0.35 Total: -45.69 kcal Atomic # 8 Polarization: -10.73 SS G_CDS: -0.73 Total: -11.45 kcal Atomic # 14 Polarization: 21.89 SS G_CDS: -5.02 Total: 16.87 kcal Atomic # 16 Polarization: 1.61 SS G_CDS: -2.47 Total: -0.87 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -31.62 -10.65 -42.26 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096421157.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.345 kcal (2) G-P(sol) polarization free energy of solvation -31.618 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.963 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.264 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.610 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds