Wall clock time and date at job start Tue Mar 31 2020 05:58:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.08999 * 109.47174 * 2 1 4 4 O 1.42900 * 109.47241 * 119.99776 * 2 1 3 5 5 C 1.35898 * 116.99909 * 276.07401 * 4 2 1 6 6 C 1.38762 * 120.04957 * 175.64063 * 5 4 2 7 7 C 1.38131 * 119.96711 * 179.97438 * 6 5 4 8 8 C 1.38274 * 120.06438 * 359.97438 * 7 6 5 9 9 C 1.38338 * 120.09920 * 0.02712 * 8 7 6 10 10 Br 1.89100 * 119.98238 * 179.97438 * 9 8 7 11 11 C 1.38253 * 120.03519 * 359.97438 * 9 8 7 12 12 C 1.50695 * 109.47090 * 239.99673 * 2 1 3 13 13 O 1.21281 * 120.00239 * 249.70905 * 12 2 1 14 14 N 1.34778 * 120.00065 * 69.71272 * 12 2 1 15 15 C 1.46504 * 120.00252 * 185.61454 * 14 12 2 16 16 C 1.46503 * 119.99904 * 5.61953 * 14 12 2 17 17 H 1.08998 * 109.47320 * 4.53992 * 16 14 12 18 18 C 1.52999 * 109.47022 * 124.54178 * 16 14 12 19 19 C 1.50700 * 109.47019 * 244.54363 * 16 14 12 20 20 H 1.07999 * 119.99717 * 359.97438 * 19 16 14 21 21 C 1.37872 * 119.99782 * 180.02562 * 19 16 14 22 22 N 1.31513 * 120.00213 * 359.97438 * 21 19 16 23 23 Si 1.86807 * 119.99857 * 179.97438 * 21 19 16 24 24 H 1.48499 * 109.46904 * 359.97438 * 23 21 19 25 25 H 1.48495 * 109.47398 * 119.99531 * 23 21 19 26 26 H 1.48499 * 109.47081 * 239.99727 * 23 21 19 27 27 H 1.08999 * 109.47121 * 294.93053 * 1 2 3 28 28 H 1.08999 * 109.47307 * 54.92739 * 1 2 3 29 29 H 1.08994 * 109.47794 * 174.93127 * 1 2 3 30 30 H 1.08000 * 120.02063 * 0.25348 * 6 5 4 31 31 H 1.07995 * 119.96671 * 180.02562 * 7 6 5 32 32 H 1.07995 * 119.94981 * 179.97438 * 8 7 6 33 33 H 1.08006 * 120.03297 * 179.97438 * 11 9 8 34 34 H 1.09001 * 109.46472 * 94.98155 * 15 14 12 35 35 H 1.08996 * 109.46868 * 214.97804 * 15 14 12 36 36 H 1.09003 * 109.46679 * 334.98337 * 15 14 12 37 37 H 1.09003 * 109.47078 * 299.99271 * 18 16 14 38 38 H 1.08996 * 109.47621 * 60.00102 * 18 16 14 39 39 H 1.09004 * 109.47061 * 180.02562 * 18 16 14 40 40 H 0.97003 * 119.99736 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 8 2.0063 -0.6736 1.1668 5 6 2.0911 0.0570 2.3095 6 6 2.4589 -0.5545 3.4996 7 6 2.5451 0.1898 4.6600 8 6 2.2659 1.5439 4.6367 9 6 1.8990 2.1563 3.4518 10 35 1.5171 4.0082 3.4240 11 6 1.8113 1.4152 2.2880 12 6 2.0322 -0.7105 -1.2304 13 8 2.5778 -1.7888 -1.1278 14 7 1.8753 -0.1475 -2.4449 15 6 2.2511 -0.8901 -3.6506 16 6 1.3290 1.2070 -2.5593 17 1 1.1859 1.6264 -1.5635 18 6 2.3033 2.0849 -3.3473 19 6 0.0052 1.1557 -3.2777 20 1 -0.3894 0.2089 -3.6156 21 6 -0.7014 2.3176 -3.5045 22 7 -0.2206 3.4706 -3.0935 23 14 -2.3420 2.2541 -4.3956 24 1 -2.6576 0.8475 -4.7519 25 1 -3.4069 2.7920 -3.5114 26 1 -2.2655 3.0724 -5.6325 27 1 -0.3633 0.4332 0.9319 28 1 -0.3634 0.5905 -0.8410 29 1 -0.3634 -1.0235 -0.0908 30 1 2.6820 -1.6111 3.5177 31 1 2.8318 -0.2861 5.5861 32 1 2.3335 2.1240 5.5451 33 1 1.5244 1.8934 1.3630 34 1 1.3727 -1.3916 -4.0569 35 1 2.6509 -0.1993 -4.3928 36 1 3.0092 -1.6318 -3.3989 37 1 3.2607 2.1221 -2.8276 38 1 2.4464 1.6656 -4.3432 39 1 1.8970 3.0929 -3.4321 40 1 -0.7180 4.2880 -3.2527 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096426405.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:03 Heat of formation + Delta-G solvation = -38.273158 kcal Electronic energy + Delta-G solvation = -24025.615075 eV Core-core repulsion = 20466.519082 eV Total energy + Delta-G solvation = -3559.095993 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 355.057 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.50300 -39.11003 -37.29333 -35.68399 -32.76826 -32.57691 -31.50457 -30.14326 -29.27852 -28.99515 -26.58803 -25.45981 -24.11708 -22.57341 -22.02447 -21.25296 -18.68159 -18.25349 -16.77495 -16.48540 -16.05833 -15.64473 -15.37977 -15.01719 -14.67250 -14.36497 -14.19143 -13.57262 -13.38005 -13.09436 -12.92469 -12.76108 -12.37630 -12.04611 -11.86030 -11.77471 -11.52287 -11.43887 -11.26125 -11.12230 -10.93549 -10.83131 -10.67033 -10.48276 -10.33533 -10.30092 -10.23580 -9.49376 -9.06685 -8.90160 -8.64700 -8.22281 -7.77117 -6.27948 -4.37645 1.01931 1.28118 1.57240 2.95462 3.14465 3.15558 3.25136 3.28975 3.55755 4.05542 4.24866 4.71736 4.83282 4.99401 5.02619 5.05357 5.16707 5.27254 5.32741 5.48794 5.57694 5.94377 6.01169 6.06583 6.10128 6.16706 6.23503 6.24259 6.34699 6.47104 6.54490 6.62713 6.65567 6.80962 7.05791 7.20869 7.44230 7.56336 7.74748 7.98471 8.25301 8.64136 8.83521 9.31522 10.76021 Molecular weight = 355.06amu Principal moments of inertia in cm(-1) A = 0.010520 B = 0.004069 C = 0.003227 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2660.974629 B = 6879.407006 C = 8673.363456 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C 0.069 3.931 3 H 0.098 0.902 4 O -0.285 6.285 5 C 0.147 3.853 6 C -0.141 4.141 7 C -0.076 4.076 8 C -0.138 4.138 9 C -0.047 4.047 10 Br -0.048 7.048 11 C -0.186 4.186 12 C 0.518 3.482 13 O -0.554 6.554 14 N -0.586 5.586 15 C 0.095 3.905 16 C 0.249 3.751 17 H 0.051 0.949 18 C -0.153 4.153 19 C -0.531 4.531 20 H 0.064 0.936 21 C 0.069 3.931 22 N -0.884 5.884 23 Si 0.896 3.104 24 H -0.272 1.272 25 H -0.282 1.282 26 H -0.282 1.282 27 H 0.063 0.937 28 H 0.115 0.885 29 H 0.065 0.935 30 H 0.137 0.863 31 H 0.136 0.864 32 H 0.131 0.869 33 H 0.145 0.855 34 H 0.050 0.950 35 H 0.069 0.931 36 H 0.063 0.937 37 H 0.014 0.986 38 H 0.037 0.963 39 H 0.097 0.903 40 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.677 0.262 13.475 13.971 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.236 4.236 2 C 0.010 3.990 3 H 0.115 0.885 4 O -0.197 6.197 5 C 0.100 3.900 6 C -0.160 4.160 7 C -0.095 4.095 8 C -0.158 4.158 9 C -0.127 4.127 10 Br 0.037 6.963 11 C -0.206 4.206 12 C 0.303 3.697 13 O -0.434 6.434 14 N -0.318 5.318 15 C -0.048 4.048 16 C 0.149 3.851 17 H 0.068 0.932 18 C -0.212 4.212 19 C -0.569 4.569 20 H 0.083 0.917 21 C -0.134 4.134 22 N -0.522 5.522 23 Si 0.724 3.276 24 H -0.196 1.196 25 H -0.208 1.208 26 H -0.208 1.208 27 H 0.082 0.918 28 H 0.133 0.867 29 H 0.084 0.916 30 H 0.155 0.845 31 H 0.154 0.846 32 H 0.149 0.851 33 H 0.163 0.837 34 H 0.069 0.931 35 H 0.088 0.912 36 H 0.082 0.918 37 H 0.033 0.967 38 H 0.056 0.944 39 H 0.116 0.884 40 H 0.076 0.924 Dipole moment (debyes) X Y Z Total from point charges 3.813 0.411 13.437 13.974 hybrid contribution -0.967 0.042 -0.676 1.181 sum 2.845 0.453 12.761 13.083 Atomic orbital electron populations 1.22425 0.91737 1.04341 1.05102 1.22348 0.96586 0.96869 0.83196 0.88466 1.86209 1.80143 1.37746 1.15566 1.19026 0.94354 0.89443 0.87173 1.20591 1.04191 1.01205 0.89975 1.20921 0.97868 0.93073 0.97662 1.20972 1.02882 0.95286 0.96707 1.21538 1.04204 0.90973 0.95945 1.96747 1.93784 1.06496 1.99230 1.21369 1.06673 0.93504 0.99058 1.19805 0.79613 0.85774 0.84459 1.90630 1.44031 1.22184 1.86507 1.48121 1.61269 1.18207 1.04211 1.21432 0.99903 0.96336 0.87155 1.19194 0.92355 0.75827 0.97748 0.93160 1.22143 0.96299 1.04064 0.98672 1.21343 1.03321 0.93894 1.38343 0.91746 1.24887 0.98094 0.95174 0.95257 1.69854 1.38393 0.98139 1.45811 0.86458 0.83306 0.78352 0.79512 1.19648 1.20784 1.20829 0.91800 0.86695 0.91581 0.84519 0.84590 0.85084 0.83749 0.93108 0.91228 0.91783 0.96741 0.94413 0.88446 0.92437 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -3.15 9.01 37.15 0.33 -2.82 16 2 C 0.07 1.28 1.80 -27.89 -0.05 1.23 16 3 H 0.10 1.75 4.65 -51.93 -0.24 1.51 16 4 O -0.28 -5.16 9.36 -39.14 -0.37 -5.53 16 5 C 0.15 2.28 6.51 -39.22 -0.26 2.02 16 6 C -0.14 -1.79 9.99 -39.43 -0.39 -2.19 16 7 C -0.08 -0.80 10.04 -39.61 -0.40 -1.20 16 8 C -0.14 -1.55 9.78 -39.53 -0.39 -1.94 16 9 C -0.05 -0.63 6.22 -39.54 -0.25 -0.87 16 10 Br -0.05 -0.62 33.70 -68.01 -2.29 -2.91 16 11 C -0.19 -2.78 8.20 -39.41 -0.32 -3.10 16 12 C 0.52 10.89 7.01 -10.99 -0.08 10.82 16 13 O -0.55 -12.94 16.01 -14.17 -0.23 -13.17 16 14 N -0.59 -12.11 2.75 -175.26 -0.48 -12.59 16 15 C 0.09 1.75 10.00 59.85 0.60 2.35 16 16 C 0.25 5.45 1.82 -69.08 -0.13 5.33 16 17 H 0.05 1.13 4.86 -51.93 -0.25 0.88 16 18 C -0.15 -3.29 8.83 37.16 0.33 -2.96 16 19 C -0.53 -12.61 7.31 -34.44 -0.25 -12.86 16 20 H 0.06 1.57 7.78 -52.49 -0.41 1.17 16 21 C 0.07 1.68 5.30 -17.82 -0.09 1.59 16 22 N -0.88 -22.10 11.32 55.43 0.63 -21.48 16 23 Si 0.90 19.36 29.54 -169.99 -5.02 14.34 16 24 H -0.27 -5.90 7.11 56.52 0.40 -5.49 16 25 H -0.28 -6.12 7.11 56.52 0.40 -5.72 16 26 H -0.28 -6.14 7.11 56.52 0.40 -5.74 16 27 H 0.06 1.01 7.50 -51.93 -0.39 0.62 16 28 H 0.11 2.25 5.41 -51.93 -0.28 1.97 16 29 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.14 1.56 8.06 -52.49 -0.42 1.14 16 31 H 0.14 0.98 8.06 -52.49 -0.42 0.56 16 32 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 33 H 0.14 2.27 5.78 -52.48 -0.30 1.96 16 34 H 0.05 0.92 8.14 -51.93 -0.42 0.50 16 35 H 0.07 1.21 6.24 -51.93 -0.32 0.88 16 36 H 0.06 1.15 7.22 -51.93 -0.37 0.78 16 37 H 0.01 0.27 8.14 -51.93 -0.42 -0.15 16 38 H 0.04 0.77 6.58 -51.93 -0.34 0.43 16 39 H 0.10 2.28 6.07 -51.93 -0.32 1.97 16 40 H 0.27 6.41 8.31 -40.82 -0.34 6.07 16 LS Contribution 344.83 15.07 5.20 5.20 Total: -1.00 -27.10 344.83 -8.81 -35.91 By element: Atomic # 1 Polarization: 9.72 SS G_CDS: -4.90 Total: 4.82 kcal Atomic # 6 Polarization: -3.25 SS G_CDS: -1.34 Total: -4.59 kcal Atomic # 7 Polarization: -34.21 SS G_CDS: 0.15 Total: -34.07 kcal Atomic # 8 Polarization: -18.10 SS G_CDS: -0.59 Total: -18.69 kcal Atomic # 14 Polarization: 19.36 SS G_CDS: -5.02 Total: 14.34 kcal Atomic # 35 Polarization: -0.62 SS G_CDS: -2.29 Total: -2.91 kcal Total LS contribution 5.20 Total: 5.20 kcal Total: -27.10 -8.81 -35.91 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096426405.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.366 kcal (2) G-P(sol) polarization free energy of solvation -27.098 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.464 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.809 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.907 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.273 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds