Wall clock time and date at job start Tue Mar 31 2020 05:58:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 H 1.09003 * 109.47320 * 2 1 4 4 O 1.42904 * 109.47334 * 119.99977 * 2 1 3 5 5 C 1.35899 * 116.99933 * 275.79208 * 4 2 1 6 6 C 1.38766 * 120.05235 * 185.58198 * 5 4 2 7 7 C 1.38121 * 119.96590 * 180.02562 * 6 5 4 8 8 C 1.38266 * 120.06868 * 359.97438 * 7 6 5 9 9 C 1.38340 * 120.09897 * 0.04523 * 8 7 6 10 10 Br 1.89102 * 119.98316 * 179.97438 * 9 8 7 11 11 C 1.38254 * 120.03814 * 359.67869 * 9 8 7 12 12 C 1.50697 * 109.47175 * 239.99940 * 2 1 3 13 13 O 1.21286 * 120.00135 * 244.99938 * 12 2 1 14 14 N 1.34777 * 119.99756 * 64.99957 * 12 2 1 15 15 C 1.46500 * 120.00274 * 359.97438 * 14 12 2 16 16 C 1.46505 * 119.99751 * 179.97438 * 14 12 2 17 17 H 1.09002 * 109.47171 * 0.02562 * 16 14 12 18 18 C 1.52999 * 109.47030 * 240.00156 * 16 14 12 19 19 C 1.50702 * 109.47067 * 120.00132 * 16 14 12 20 20 H 1.07994 * 119.99963 * 32.94789 * 19 16 14 21 21 C 1.37875 * 119.99612 * 212.95471 * 19 16 14 22 22 N 1.31517 * 119.99625 * 180.80468 * 21 19 16 23 23 Si 1.86794 * 120.00580 * 0.80027 * 21 19 16 24 24 H 1.48495 * 109.47213 * 89.93983 * 23 21 19 25 25 H 1.48506 * 109.47503 * 209.94346 * 23 21 19 26 26 H 1.48501 * 109.46867 * 329.94319 * 23 21 19 27 27 H 1.08986 * 109.46919 * 59.99865 * 1 2 3 28 28 H 1.08997 * 109.46881 * 180.02562 * 1 2 3 29 29 H 1.09002 * 109.46716 * 299.99914 * 1 2 3 30 30 H 1.08001 * 120.01089 * 0.02752 * 6 5 4 31 31 H 1.08008 * 119.96703 * 180.02562 * 7 6 5 32 32 H 1.08001 * 119.95585 * 180.02562 * 8 7 6 33 33 H 1.07998 * 120.03666 * 180.30178 * 11 9 8 34 34 H 1.08995 * 109.46846 * 270.00258 * 15 14 12 35 35 H 1.09000 * 109.46930 * 30.00062 * 15 14 12 36 36 H 1.09000 * 109.47048 * 149.99538 * 15 14 12 37 37 H 1.08998 * 109.46934 * 173.52256 * 18 16 14 38 38 H 1.08994 * 109.47066 * 53.52417 * 18 16 14 39 39 H 1.08996 * 109.46947 * 293.52113 * 18 16 14 40 40 H 0.97000 * 120.00165 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6736 1.1668 5 6 2.0969 0.0585 2.3081 6 6 2.6595 -0.4982 3.4480 7 6 2.7500 0.2474 4.6072 8 6 2.2812 1.5479 4.6329 9 6 1.7195 2.1054 3.4983 10 35 1.0787 3.8841 3.5373 11 6 1.6319 1.3649 2.3340 12 6 2.0324 -0.7104 -1.2304 13 8 2.6531 -1.7467 -1.1215 14 7 1.7919 -0.1941 -2.4519 15 6 1.0417 1.0573 -2.5836 16 6 2.2808 -0.8845 -3.6481 17 1 2.8113 -1.7900 -3.3537 18 6 3.2306 0.0367 -4.4162 19 6 1.1140 -1.2504 -4.5290 20 1 0.2451 -0.6103 -4.5677 21 6 1.1560 -2.4023 -5.2854 22 7 0.1445 -2.7135 -6.0662 23 14 2.6495 -3.5211 -5.2014 24 1 2.4539 -4.5280 -4.1276 25 1 2.8234 -4.2135 -6.5036 26 1 3.8587 -2.7111 -4.9061 27 1 -0.3632 0.5138 -0.8899 28 1 -0.3633 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8900 30 1 3.0263 -1.5138 3.4287 31 1 3.1883 -0.1857 5.4943 32 1 2.3533 2.1293 5.5402 33 1 1.1978 1.8018 1.4469 34 1 -0.0222 0.8359 -2.6681 35 1 1.2149 1.6788 -1.7051 36 1 1.3745 1.5882 -3.4755 37 1 3.6829 -0.5139 -5.2410 38 1 4.0122 0.3934 -3.7455 39 1 2.6732 0.8869 -4.8094 40 1 0.1741 -3.5237 -6.5987 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096426406.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:06 Heat of formation + Delta-G solvation = -34.773675 kcal Electronic energy + Delta-G solvation = -23611.872932 eV Core-core repulsion = 20052.928687 eV Total energy + Delta-G solvation = -3558.944244 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 355.057 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.72277 -39.24876 -37.51956 -35.50495 -33.29588 -32.61069 -31.76127 -30.42526 -29.91680 -29.11206 -26.52018 -25.35764 -24.59557 -23.02410 -22.40244 -20.82423 -18.60755 -18.48143 -17.30768 -16.56305 -16.31434 -15.83654 -15.70769 -15.31532 -14.59813 -14.50467 -14.27748 -13.79175 -13.54208 -13.40362 -13.00485 -12.71473 -12.49093 -12.38284 -12.34748 -12.05633 -11.92822 -11.66757 -11.55109 -11.35055 -11.15506 -11.05885 -10.73441 -10.64618 -10.59497 -10.47698 -9.84392 -9.36305 -9.18353 -9.05320 -8.67647 -8.43928 -7.81367 -6.21405 -4.24234 0.80056 1.06682 1.30384 2.73938 3.08166 3.28212 3.35586 3.35807 3.41733 3.85549 4.34412 4.48863 4.54257 4.73261 4.80991 4.82746 4.94833 5.04069 5.17995 5.23478 5.34563 5.47757 5.58213 5.60397 5.83147 5.84859 5.94290 6.06060 6.06328 6.17735 6.26395 6.32895 6.34556 6.50379 6.85596 6.96175 7.18557 7.37704 7.55493 8.00404 8.39862 8.75043 8.80490 9.40572 10.90396 Molecular weight = 355.06amu Principal moments of inertia in cm(-1) A = 0.020341 B = 0.002684 C = 0.002496 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1376.184806 B =10428.356672 C =11215.769640 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C 0.066 3.934 3 H 0.093 0.907 4 O -0.278 6.278 5 C 0.146 3.854 6 C -0.137 4.137 7 C -0.074 4.074 8 C -0.136 4.136 9 C -0.049 4.049 10 Br -0.051 7.051 11 C -0.189 4.189 12 C 0.510 3.490 13 O -0.532 6.532 14 N -0.582 5.582 15 C 0.079 3.921 16 C 0.225 3.775 17 H 0.065 0.935 18 C -0.149 4.149 19 C -0.526 4.526 20 H 0.079 0.921 21 C 0.080 3.920 22 N -0.890 5.890 23 Si 0.872 3.128 24 H -0.272 1.272 25 H -0.286 1.286 26 H -0.261 1.261 27 H 0.091 0.909 28 H 0.077 0.923 29 H 0.069 0.931 30 H 0.139 0.861 31 H 0.138 0.862 32 H 0.132 0.868 33 H 0.141 0.859 34 H 0.060 0.940 35 H 0.053 0.947 36 H 0.076 0.924 37 H 0.057 0.943 38 H 0.027 0.973 39 H 0.051 0.949 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.083 14.053 21.423 25.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.006 3.994 3 H 0.111 0.889 4 O -0.189 6.189 5 C 0.098 3.902 6 C -0.156 4.156 7 C -0.093 4.093 8 C -0.156 4.156 9 C -0.129 4.129 10 Br 0.035 6.965 11 C -0.209 4.209 12 C 0.295 3.705 13 O -0.409 6.409 14 N -0.315 5.315 15 C -0.065 4.065 16 C 0.125 3.875 17 H 0.083 0.917 18 C -0.208 4.208 19 C -0.564 4.564 20 H 0.097 0.903 21 C -0.124 4.124 22 N -0.527 5.527 23 Si 0.699 3.301 24 H -0.197 1.197 25 H -0.212 1.212 26 H -0.186 1.186 27 H 0.109 0.891 28 H 0.096 0.904 29 H 0.087 0.913 30 H 0.157 0.843 31 H 0.156 0.844 32 H 0.150 0.850 33 H 0.158 0.842 34 H 0.079 0.921 35 H 0.071 0.929 36 H 0.095 0.905 37 H 0.076 0.924 38 H 0.046 0.954 39 H 0.070 0.930 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 2.143 13.824 21.271 25.459 hybrid contribution 0.579 -0.736 -0.193 0.956 sum 2.722 13.088 21.078 24.960 Atomic orbital electron populations 1.22473 0.92547 1.04998 1.04005 1.22388 0.96051 0.96714 0.84222 0.88933 1.86280 1.80321 1.36988 1.15360 1.19060 0.94073 0.89646 0.87380 1.20662 1.02151 1.01829 0.90908 1.20969 0.97650 0.93184 0.97472 1.20995 1.01046 0.96154 0.97395 1.21516 1.03125 0.91847 0.96407 1.96732 1.86909 1.13765 1.99129 1.21273 1.06398 0.94418 0.98821 1.19822 0.80955 0.85747 0.83953 1.90685 1.41025 1.23254 1.85965 1.48223 1.53474 1.23955 1.05809 1.21781 0.97012 0.85944 1.01723 1.19350 0.94522 0.92247 0.81383 0.91738 1.22258 0.98213 1.00507 0.99811 1.21095 1.02636 1.08609 1.24097 0.90320 1.24941 0.95926 0.96918 0.94607 1.69880 1.30580 1.25458 1.26784 0.86926 0.83913 0.81670 0.77576 1.19702 1.21207 1.18560 0.89058 0.90383 0.91257 0.84267 0.84389 0.84963 0.84161 0.92121 0.92880 0.90496 0.92402 0.95393 0.92950 0.92328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -2.39 8.88 37.16 0.33 -2.06 16 2 C 0.07 1.00 1.83 -27.88 -0.05 0.95 16 3 H 0.09 1.16 5.34 -51.93 -0.28 0.89 16 4 O -0.28 -4.48 9.34 -39.28 -0.37 -4.85 16 5 C 0.15 1.90 6.59 -39.22 -0.26 1.65 16 6 C -0.14 -1.52 9.99 -39.43 -0.39 -1.91 16 7 C -0.07 -0.65 10.04 -39.61 -0.40 -1.04 16 8 C -0.14 -1.23 9.78 -39.53 -0.39 -1.62 16 9 C -0.05 -0.51 6.22 -39.54 -0.25 -0.76 16 10 Br -0.05 -0.47 33.70 -68.01 -2.29 -2.76 16 11 C -0.19 -2.16 7.95 -39.41 -0.31 -2.47 16 12 C 0.51 10.32 7.10 -10.99 -0.08 10.25 16 13 O -0.53 -13.13 15.84 -14.31 -0.23 -13.35 16 14 N -0.58 -11.60 2.75 -175.26 -0.48 -12.09 16 15 C 0.08 1.19 8.01 59.85 0.48 1.67 16 16 C 0.23 5.28 2.19 -69.08 -0.15 5.13 16 17 H 0.06 1.68 4.26 -51.93 -0.22 1.46 16 18 C -0.15 -3.04 8.89 37.16 0.33 -2.71 16 19 C -0.53 -14.08 8.83 -34.44 -0.30 -14.38 16 20 H 0.08 2.21 7.65 -52.49 -0.40 1.81 16 21 C 0.08 2.26 5.47 -17.82 -0.10 2.16 16 22 N -0.89 -26.35 13.96 55.43 0.77 -25.58 16 23 Si 0.87 21.80 26.61 -169.99 -4.52 17.27 16 24 H -0.27 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -6.97 7.11 56.52 0.40 -6.56 16 26 H -0.26 -6.26 6.17 56.52 0.35 -5.91 16 27 H 0.09 1.10 5.11 -51.94 -0.27 0.84 16 28 H 0.08 1.15 8.14 -51.93 -0.42 0.73 16 29 H 0.07 0.75 6.83 -51.93 -0.35 0.39 16 30 H 0.14 1.44 8.06 -52.49 -0.42 1.02 16 31 H 0.14 0.80 8.06 -52.48 -0.42 0.38 16 32 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 33 H 0.14 1.47 5.40 -52.49 -0.28 1.19 16 34 H 0.06 0.91 7.02 -51.93 -0.36 0.54 16 35 H 0.05 0.60 6.07 -51.93 -0.32 0.29 16 36 H 0.08 1.13 6.56 -51.93 -0.34 0.79 16 37 H 0.06 1.20 7.19 -51.93 -0.37 0.83 16 38 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 39 H 0.05 0.98 6.94 -51.93 -0.36 0.62 16 40 H 0.27 7.44 8.31 -40.82 -0.34 7.10 16 LS Contribution 341.51 15.07 5.15 5.15 Total: -1.00 -32.58 341.51 -8.37 -40.95 By element: Atomic # 1 Polarization: 5.27 SS G_CDS: -4.86 Total: 0.41 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -1.54 Total: -5.15 kcal Atomic # 7 Polarization: -37.95 SS G_CDS: 0.29 Total: -37.66 kcal Atomic # 8 Polarization: -17.61 SS G_CDS: -0.59 Total: -18.20 kcal Atomic # 14 Polarization: 21.80 SS G_CDS: -4.52 Total: 17.27 kcal Atomic # 35 Polarization: -0.47 SS G_CDS: -2.29 Total: -2.76 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -32.58 -8.37 -40.95 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096426406.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.178 kcal (2) G-P(sol) polarization free energy of solvation -32.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.371 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.952 kcal (6) G-S(sol) free energy of system = (1) + (5) -34.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds