Wall clock time and date at job start Tue Mar 31 2020 05:58:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09002 * 109.46992 * 2 1 4 4 O 1.42902 * 109.46984 * 240.00619 * 2 1 3 5 5 C 1.35898 * 117.00453 * 84.93784 * 4 2 1 6 6 C 1.38756 * 120.04725 * 354.54031 * 5 4 2 7 7 C 1.38135 * 119.96396 * 179.97438 * 6 5 4 8 8 C 1.38272 * 120.06215 * 359.97438 * 7 6 5 9 9 C 1.38342 * 120.10319 * 0.02562 * 8 7 6 10 10 Br 1.89096 * 119.98255 * 179.97438 * 9 8 7 11 11 C 1.38251 * 120.03237 * 359.75012 * 9 8 7 12 12 C 1.50694 * 109.47586 * 120.00000 * 2 1 3 13 13 O 1.21276 * 120.00007 * 120.00139 * 12 2 1 14 14 N 1.34783 * 119.99931 * 300.00258 * 12 2 1 15 15 C 1.46499 * 119.99758 * 359.97438 * 14 12 2 16 16 C 1.46498 * 119.99684 * 180.27327 * 14 12 2 17 17 H 1.08999 * 109.47697 * 359.72238 * 16 14 12 18 18 C 1.53009 * 109.46947 * 119.72513 * 16 14 12 19 19 C 1.50701 * 109.47117 * 239.71946 * 16 14 12 20 20 H 1.08002 * 120.00054 * 0.02562 * 19 16 14 21 21 C 1.37876 * 119.99889 * 179.97438 * 19 16 14 22 22 N 1.31520 * 119.99668 * 180.02562 * 21 19 16 23 23 Si 1.86800 * 120.00070 * 0.02562 * 21 19 16 24 24 H 1.48501 * 109.46944 * 90.00112 * 23 21 19 25 25 H 1.48502 * 109.46645 * 209.99438 * 23 21 19 26 26 H 1.48493 * 109.46848 * 329.99657 * 23 21 19 27 27 H 1.08997 * 109.47184 * 60.00153 * 1 2 3 28 28 H 1.08993 * 109.46762 * 180.02562 * 1 2 3 29 29 H 1.09004 * 109.46806 * 299.99399 * 1 2 3 30 30 H 1.08001 * 120.02497 * 359.97438 * 6 5 4 31 31 H 1.08001 * 119.97110 * 180.02562 * 7 6 5 32 32 H 1.07996 * 119.94829 * 179.97438 * 8 7 6 33 33 H 1.08002 * 120.03447 * 180.25176 * 11 9 8 34 34 H 1.09004 * 109.47095 * 90.00311 * 15 14 12 35 35 H 1.09002 * 109.47139 * 209.99989 * 15 14 12 36 36 H 1.08992 * 109.47667 * 330.00552 * 15 14 12 37 37 H 1.09003 * 109.46832 * 299.99860 * 18 16 14 38 38 H 1.08997 * 109.46693 * 59.99656 * 18 16 14 39 39 H 1.08995 * 109.46623 * 179.97438 * 18 16 14 40 40 H 0.96999 * 119.99785 * 180.02562 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 8 2.0064 -0.6735 -1.1669 5 6 2.1113 0.0624 -2.3045 6 6 1.6574 1.3734 -2.3282 7 6 1.7654 2.1201 -3.4854 8 6 2.3259 1.5624 -4.6198 9 6 2.7793 0.2556 -4.5991 10 35 3.5445 -0.5039 -6.1526 11 6 2.6774 -0.4939 -3.4418 12 6 2.0325 -0.7104 1.2304 13 8 2.7298 -1.6964 1.1191 14 7 1.7069 -0.2499 2.4546 15 6 0.8650 0.9415 2.5889 16 6 2.2003 -0.9370 3.6506 17 1 2.8051 -1.7940 3.3540 18 6 3.0531 0.0274 4.4775 19 6 1.0317 -1.4089 4.4769 20 1 0.0223 -1.2165 4.1442 21 6 1.2510 -2.0870 5.6572 22 7 0.2311 -2.4992 6.3780 23 14 2.9967 -2.4203 6.2324 24 1 3.4613 -1.2945 7.0820 25 1 3.0266 -3.6793 7.0192 26 1 3.8896 -2.5520 5.0532 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3632 -1.0276 0.0005 29 1 -0.3633 0.5138 0.8901 30 1 1.2199 1.8099 -1.4426 31 1 1.4125 3.1406 -3.5039 32 1 2.4090 2.1477 -5.5236 33 1 3.0351 -1.5128 -3.4245 34 1 -0.1831 0.6439 2.6222 35 1 1.1229 1.4667 3.5086 36 1 1.0287 1.6002 1.7362 37 1 3.8984 0.3687 3.8798 38 1 2.4483 0.8843 4.7741 39 1 3.4198 -0.4837 5.3676 40 1 0.3854 -2.9760 7.2085 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096426407.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:09 Heat of formation + Delta-G solvation = -23.608640 kcal Electronic energy + Delta-G solvation = -23457.316226 eV Core-core repulsion = 19898.856134 eV Total energy + Delta-G solvation = -3558.460092 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 355.057 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -40.75512 -39.31224 -37.55842 -35.61949 -33.38056 -32.51400 -32.01840 -30.52840 -29.61311 -29.30932 -26.63644 -25.28581 -24.57120 -23.05418 -22.60533 -20.87661 -18.68361 -18.55462 -17.10576 -16.55392 -16.33816 -15.92846 -15.71304 -15.39332 -14.70078 -14.61213 -14.46500 -13.82808 -13.58837 -13.43293 -13.04915 -12.94191 -12.61319 -12.40022 -12.28784 -12.14019 -11.94291 -11.75039 -11.61722 -11.32611 -11.23386 -11.04472 -10.81926 -10.69730 -10.59102 -10.20241 -9.70558 -9.43379 -9.13938 -9.12076 -8.69310 -8.46743 -7.88542 -6.20285 -4.21687 0.76739 1.07793 1.27650 2.72843 3.04230 3.19251 3.33637 3.33881 3.36054 3.81040 4.30257 4.42509 4.58290 4.66245 4.79700 4.80272 4.89794 4.96686 5.12625 5.13138 5.38169 5.47966 5.53699 5.59214 5.79931 5.83982 5.95976 6.01655 6.02780 6.12649 6.16555 6.23938 6.25828 6.38920 6.75638 6.96547 7.15766 7.24731 7.54091 8.01404 8.37121 8.69360 8.80739 9.40110 10.92271 Molecular weight = 355.06amu Principal moments of inertia in cm(-1) A = 0.025253 B = 0.002233 C = 0.002141 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1108.516899 B =12535.775072 C =13076.624433 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C 0.068 3.932 3 H 0.095 0.905 4 O -0.279 6.279 5 C 0.146 3.854 6 C -0.199 4.199 7 C -0.072 4.072 8 C -0.136 4.136 9 C -0.051 4.051 10 Br -0.046 7.046 11 C -0.126 4.126 12 C 0.511 3.489 13 O -0.528 6.528 14 N -0.581 5.581 15 C 0.080 3.920 16 C 0.231 3.769 17 H 0.064 0.936 18 C -0.163 4.163 19 C -0.529 4.529 20 H 0.080 0.920 21 C 0.077 3.923 22 N -0.893 5.893 23 Si 0.882 3.118 24 H -0.276 1.276 25 H -0.293 1.293 26 H -0.263 1.263 27 H 0.069 0.931 28 H 0.077 0.923 29 H 0.094 0.906 30 H 0.138 0.862 31 H 0.135 0.865 32 H 0.133 0.867 33 H 0.143 0.857 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.054 0.946 37 H 0.034 0.966 38 H 0.057 0.943 39 H 0.052 0.948 40 H 0.267 0.733 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.780 12.334 -23.159 26.386 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.008 3.992 3 H 0.113 0.887 4 O -0.190 6.190 5 C 0.099 3.901 6 C -0.218 4.218 7 C -0.091 4.091 8 C -0.156 4.156 9 C -0.130 4.130 10 Br 0.039 6.961 11 C -0.146 4.146 12 C 0.296 3.704 13 O -0.404 6.404 14 N -0.314 5.314 15 C -0.064 4.064 16 C 0.130 3.870 17 H 0.082 0.918 18 C -0.220 4.220 19 C -0.567 4.567 20 H 0.098 0.902 21 C -0.126 4.126 22 N -0.531 5.531 23 Si 0.712 3.288 24 H -0.203 1.203 25 H -0.220 1.220 26 H -0.188 1.188 27 H 0.088 0.912 28 H 0.096 0.904 29 H 0.113 0.887 30 H 0.155 0.845 31 H 0.152 0.848 32 H 0.150 0.850 33 H 0.160 0.840 34 H 0.080 0.920 35 H 0.097 0.903 36 H 0.072 0.928 37 H 0.053 0.947 38 H 0.076 0.924 39 H 0.071 0.929 40 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 3.423 11.198 -23.572 26.320 hybrid contribution 0.474 0.232 0.948 1.085 sum 3.897 11.431 -22.624 25.645 Atomic orbital electron populations 1.22597 0.92600 1.05111 1.04242 1.22334 0.95963 0.96746 0.84116 0.88749 1.86257 1.80412 1.36814 1.15565 1.18961 0.94056 0.90212 0.86917 1.21508 1.05711 0.94184 1.00429 1.20941 0.96854 0.99691 0.91624 1.20985 1.01351 0.93609 0.99634 1.21465 1.03100 0.95995 0.92475 1.96731 1.82164 1.83882 1.33293 1.20346 1.02777 1.01542 0.89935 1.19807 0.81529 0.85168 0.83904 1.90698 1.38019 1.25738 1.85945 1.47763 1.49545 1.28518 1.05562 1.21832 0.95464 0.87117 1.01957 1.19344 0.95023 0.91457 0.81213 0.91827 1.22475 0.98900 1.00859 0.99807 1.21117 0.93124 1.37041 1.05460 0.90245 1.24856 0.96961 0.94678 0.96153 1.69868 1.30349 1.38232 1.14603 0.86931 0.85493 0.77110 0.79292 1.20338 1.22039 1.18759 0.91211 0.90432 0.88712 0.84471 0.84758 0.84950 0.83967 0.91997 0.90323 0.92752 0.94722 0.92410 0.92947 0.92349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.26 8.81 37.16 0.33 -1.93 16 2 C 0.07 0.98 1.84 -27.88 -0.05 0.93 16 3 H 0.09 1.08 5.57 -51.93 -0.29 0.79 16 4 O -0.28 -4.40 9.33 -39.33 -0.37 -4.77 16 5 C 0.15 1.88 6.60 -39.22 -0.26 1.62 16 6 C -0.20 -2.00 8.24 -39.43 -0.32 -2.32 16 7 C -0.07 -0.60 10.04 -39.61 -0.40 -1.00 16 8 C -0.14 -1.21 9.78 -39.53 -0.39 -1.60 16 9 C -0.05 -0.54 6.22 -39.54 -0.25 -0.78 16 10 Br -0.05 -0.44 33.70 -68.01 -2.29 -2.73 16 11 C -0.13 -1.54 9.73 -39.41 -0.38 -1.92 16 12 C 0.51 10.02 7.15 -10.99 -0.08 9.94 16 13 O -0.53 -12.77 15.83 -14.35 -0.23 -13.00 16 14 N -0.58 -11.30 2.75 -175.26 -0.48 -11.78 16 15 C 0.08 1.15 8.04 59.85 0.48 1.63 16 16 C 0.23 5.40 2.23 -69.08 -0.15 5.25 16 17 H 0.06 1.68 5.96 -51.93 -0.31 1.37 16 18 C -0.16 -3.36 8.65 37.16 0.32 -3.04 16 19 C -0.53 -14.19 8.95 -34.44 -0.31 -14.50 16 20 H 0.08 2.27 7.89 -52.49 -0.41 1.86 16 21 C 0.08 2.14 5.45 -17.82 -0.10 2.04 16 22 N -0.89 -26.39 13.96 55.43 0.77 -25.62 16 23 Si 0.88 21.46 24.37 -169.99 -4.14 17.32 16 24 H -0.28 -6.40 6.87 56.52 0.39 -6.01 16 25 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 26 H -0.26 -6.34 6.53 56.52 0.37 -5.97 16 27 H 0.07 0.66 6.91 -51.93 -0.36 0.31 16 28 H 0.08 1.08 8.14 -51.93 -0.42 0.65 16 29 H 0.09 1.03 4.53 -51.93 -0.24 0.80 16 30 H 0.14 1.13 5.43 -52.49 -0.28 0.84 16 31 H 0.13 0.73 8.06 -52.49 -0.42 0.31 16 32 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 33 H 0.14 1.75 8.06 -52.49 -0.42 1.33 16 34 H 0.06 0.88 6.95 -51.93 -0.36 0.52 16 35 H 0.08 1.13 6.43 -51.93 -0.33 0.80 16 36 H 0.05 0.56 6.01 -51.93 -0.31 0.25 16 37 H 0.03 0.64 8.14 -51.93 -0.42 0.22 16 38 H 0.06 1.09 6.66 -51.93 -0.35 0.74 16 39 H 0.05 1.14 3.27 -51.93 -0.17 0.97 16 40 H 0.27 7.41 8.31 -40.82 -0.34 7.07 16 LS Contribution 336.55 15.07 5.07 5.07 Total: -1.00 -32.72 336.55 -7.93 -40.65 By element: Atomic # 1 Polarization: 5.26 SS G_CDS: -4.71 Total: 0.55 kcal Atomic # 6 Polarization: -4.13 SS G_CDS: -1.56 Total: -5.69 kcal Atomic # 7 Polarization: -37.69 SS G_CDS: 0.29 Total: -37.40 kcal Atomic # 8 Polarization: -17.18 SS G_CDS: -0.59 Total: -17.77 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -4.14 Total: 17.32 kcal Atomic # 35 Polarization: -0.44 SS G_CDS: -2.29 Total: -2.73 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -32.72 -7.93 -40.65 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096426407.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.044 kcal (2) G-P(sol) polarization free energy of solvation -32.721 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.677 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.932 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.652 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.609 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds