Wall clock time and date at job start Tue Mar 31 2020 05:58:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09001 * 109.46992 * 2 1 4 4 C 1.50697 * 109.46978 * 240.00024 * 2 1 3 5 5 H 1.08004 * 119.99665 * 239.99899 * 4 2 1 6 6 C 1.37869 * 120.00150 * 60.00249 * 4 2 1 7 7 N 1.31513 * 120.00166 * 359.97438 * 6 4 2 8 8 Si 1.86805 * 120.00132 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47240 * 59.99711 * 8 6 4 10 10 H 1.48502 * 109.47311 * 179.97438 * 8 6 4 11 11 H 1.48503 * 109.46860 * 300.00040 * 8 6 4 12 12 N 1.46497 * 109.46951 * 119.99870 * 2 1 3 13 13 C 1.46500 * 119.99725 * 60.00144 * 12 2 1 14 14 C 1.34776 * 120.00467 * 240.00153 * 12 2 1 15 15 O 1.21291 * 119.99478 * 359.97438 * 14 12 2 16 16 C 1.50693 * 120.00237 * 180.02562 * 14 12 2 17 17 H 1.09000 * 109.47180 * 60.00384 * 16 14 12 18 18 C 1.52993 * 109.47331 * 299.99705 * 16 14 12 19 19 O 1.42902 * 109.46961 * 179.97438 * 16 14 12 20 20 C 1.35904 * 117.00408 * 204.70053 * 19 16 14 21 21 C 1.38755 * 120.05617 * 174.63705 * 20 19 16 22 22 C 1.38127 * 119.96781 * 179.72911 * 21 20 19 23 23 C 1.38272 * 120.06149 * 0.24860 * 22 21 20 24 24 C 1.38337 * 120.10344 * 0.02562 * 23 22 21 25 25 Br 1.89094 * 119.98079 * 179.97438 * 24 23 22 26 26 C 1.38256 * 120.03714 * 359.97309 * 24 23 22 27 27 H 1.09000 * 109.47614 * 300.00063 * 1 2 3 28 28 H 1.09004 * 109.47088 * 59.99953 * 1 2 3 29 29 H 1.09001 * 109.46992 * 179.97438 * 1 2 3 30 30 H 0.97000 * 120.00391 * 179.97438 * 7 6 4 31 31 H 1.09005 * 109.47360 * 269.99391 * 13 12 2 32 32 H 1.08999 * 109.47922 * 29.99907 * 13 12 2 33 33 H 1.09006 * 109.47056 * 150.00265 * 13 12 2 34 34 H 1.09009 * 109.47280 * 300.00452 * 18 16 14 35 35 H 1.08996 * 109.47099 * 60.00154 * 18 16 14 36 36 H 1.09004 * 109.47205 * 180.02562 * 18 16 14 37 37 H 1.08001 * 120.01577 * 0.02562 * 21 20 19 38 38 H 1.07995 * 119.97154 * 180.28173 * 22 21 20 39 39 H 1.08004 * 119.94791 * 179.97438 * 23 22 21 40 40 H 1.07997 * 120.03456 * 180.02562 * 26 24 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3225 -1.1195 -4.0079 9 1 1.8281 -2.5198 -4.0082 10 1 1.8270 -0.4199 -5.2205 11 1 3.8076 -1.1190 -4.0076 12 7 2.0183 -0.6906 1.1962 13 6 1.6644 -2.0931 1.4279 14 6 2.7931 -0.0357 2.0834 15 8 3.0865 1.1254 1.8912 16 6 3.2958 -0.7462 3.3135 17 1 3.9016 -1.6023 3.0165 18 6 2.1062 -1.2276 4.1465 19 8 4.0901 0.1518 4.0912 20 6 5.0192 -0.4010 4.9146 21 6 5.8995 0.4120 5.6142 22 6 6.8394 -0.1516 6.4550 23 6 6.9073 -1.5254 6.5961 24 6 6.0347 -2.3388 5.8957 25 35 6.1310 -4.2172 6.0908 26 6 5.0923 -1.7792 5.0530 27 1 -0.3634 0.5138 0.8900 28 1 -0.3633 0.5139 -0.8900 29 1 -0.3633 -1.0277 -0.0005 30 1 0.7088 1.1613 -3.4844 31 1 0.7375 -2.1444 1.9993 32 1 1.5294 -2.5969 0.4708 33 1 2.4628 -2.5819 1.9864 34 1 1.5004 -0.3714 4.4435 35 1 1.5007 -1.9127 3.5531 36 1 2.4699 -1.7411 5.0365 37 1 5.8467 1.4852 5.5051 38 1 7.5216 0.4813 7.0030 39 1 7.6432 -1.9642 7.2537 40 1 4.4108 -2.4142 4.5065 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096426408.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:12 Heat of formation + Delta-G solvation = -33.604147 kcal Electronic energy + Delta-G solvation = -23521.360400 eV Core-core repulsion = 19962.466870 eV Total energy + Delta-G solvation = -3558.893530 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 355.057 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -40.67890 -39.16130 -37.45233 -35.40214 -33.41001 -32.61729 -31.59195 -30.36900 -29.38275 -28.87762 -26.47696 -25.27063 -24.54673 -22.97912 -22.36278 -20.91436 -18.65326 -18.43365 -16.80344 -16.43436 -16.22444 -15.81311 -15.61901 -15.23542 -14.59955 -14.52053 -14.25532 -13.77106 -13.52128 -13.33356 -12.98196 -12.64774 -12.56690 -12.33702 -12.00345 -11.90599 -11.68537 -11.46921 -11.27627 -11.08561 -11.03365 -10.85862 -10.74413 -10.68708 -10.56481 -10.30985 -10.20839 -9.26672 -9.14112 -8.98443 -8.47562 -8.39479 -7.71353 -6.11744 -4.20472 0.83608 1.10274 1.33587 2.80200 3.16965 3.25446 3.30948 3.33124 3.39596 3.95719 4.35651 4.52743 4.58672 4.79612 4.85212 4.87702 4.96903 5.07299 5.19745 5.25734 5.37344 5.49868 5.57106 5.60331 5.86538 5.87239 5.95942 6.03414 6.09657 6.28881 6.37624 6.69557 6.76556 6.99096 7.17779 7.35210 7.46120 7.65310 7.95401 8.12669 8.39375 8.74997 8.91912 9.46075 10.93607 Molecular weight = 355.06amu Principal moments of inertia in cm(-1) A = 0.015632 B = 0.002677 C = 0.002509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1790.783089 B =10455.404788 C =11159.079416 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C 0.260 3.740 3 H 0.064 0.936 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.276 1.276 12 N -0.586 5.586 13 C 0.076 3.924 14 C 0.510 3.490 15 O -0.529 6.529 16 C 0.064 3.936 17 H 0.094 0.906 18 C -0.187 4.187 19 O -0.277 6.277 20 C 0.146 3.854 21 C -0.136 4.136 22 C -0.074 4.074 23 C -0.136 4.136 24 C -0.049 4.049 25 Br -0.051 7.051 26 C -0.188 4.188 27 H 0.012 0.988 28 H 0.094 0.906 29 H 0.030 0.970 30 H 0.265 0.735 31 H 0.050 0.950 32 H 0.085 0.915 33 H 0.053 0.947 34 H 0.074 0.926 35 H 0.093 0.907 36 H 0.068 0.932 37 H 0.140 0.860 38 H 0.138 0.862 39 H 0.132 0.868 40 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.548 -9.886 20.323 24.162 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.160 3.840 3 H 0.082 0.918 4 C -0.568 4.568 5 H 0.078 0.922 6 C -0.137 4.137 7 N -0.524 5.524 8 Si 0.727 3.273 9 H -0.202 1.202 10 H -0.211 1.211 11 H -0.202 1.202 12 N -0.319 5.319 13 C -0.067 4.067 14 C 0.294 3.706 15 O -0.405 6.405 16 C 0.004 3.996 17 H 0.112 0.888 18 C -0.244 4.244 19 O -0.189 6.189 20 C 0.099 3.901 21 C -0.155 4.155 22 C -0.093 4.093 23 C -0.156 4.156 24 C -0.129 4.129 25 Br 0.034 6.966 26 C -0.209 4.209 27 H 0.031 0.969 28 H 0.113 0.887 29 H 0.049 0.951 30 H 0.075 0.925 31 H 0.069 0.931 32 H 0.104 0.896 33 H 0.071 0.929 34 H 0.093 0.907 35 H 0.111 0.889 36 H 0.087 0.913 37 H 0.158 0.842 38 H 0.156 0.844 39 H 0.150 0.850 40 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges 8.572 -9.639 20.074 23.861 hybrid contribution 0.234 -0.456 -0.949 1.078 sum 8.806 -10.095 19.125 23.350 Atomic orbital electron populations 1.22091 0.97945 0.99500 1.00951 1.18990 0.90979 0.94544 0.79438 0.91787 1.21260 1.32148 1.13178 0.90244 0.92218 1.24884 0.94854 0.94951 0.98974 1.69864 1.36097 1.22491 1.23993 0.86540 0.79282 0.79553 0.81929 1.20188 1.21114 1.20202 1.48153 1.48813 1.11608 1.23281 1.21831 0.98752 0.83343 1.02797 1.19762 0.80135 0.87286 0.83424 1.90699 1.57261 1.16580 1.75971 1.22385 0.93053 0.92594 0.91526 0.88828 1.22587 0.97929 1.03275 1.00650 1.86270 1.45919 1.34537 1.52160 1.19058 0.89322 0.90935 0.90800 1.20658 0.95511 1.00792 0.98562 1.20968 0.97228 0.94222 0.96867 1.20992 0.99864 0.93469 1.01290 1.21509 0.99787 0.90342 1.01254 1.96727 1.98331 1.04269 1.97262 1.21268 1.02169 0.94426 1.03026 0.96909 0.88706 0.95059 0.92527 0.93135 0.89612 0.92879 0.90698 0.88853 0.91300 0.84249 0.84391 0.84980 0.84197 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.41 8.97 37.16 0.33 -3.08 16 2 C 0.26 6.51 2.64 -69.08 -0.18 6.33 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.52 16 4 C -0.53 -14.01 7.99 -34.44 -0.28 -14.29 16 5 H 0.06 1.54 7.33 -52.48 -0.38 1.15 16 6 C 0.07 1.78 5.30 -17.82 -0.09 1.68 16 7 N -0.89 -24.77 11.32 55.43 0.63 -24.14 16 8 Si 0.90 20.73 29.54 -169.99 -5.02 15.71 16 9 H -0.28 -6.19 7.11 56.52 0.40 -5.79 16 10 H -0.29 -6.55 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.42 7.11 56.52 0.40 -6.01 16 12 N -0.59 -12.08 2.75 -175.26 -0.48 -12.57 16 13 C 0.08 1.19 7.80 59.85 0.47 1.65 16 14 C 0.51 10.59 7.15 -10.99 -0.08 10.51 16 15 O -0.53 -13.44 15.83 -14.36 -0.23 -13.67 16 16 C 0.06 1.00 1.84 -27.89 -0.05 0.94 16 17 H 0.09 1.28 5.57 -51.93 -0.29 0.99 16 18 C -0.19 -2.28 8.80 37.15 0.33 -1.96 16 19 O -0.28 -4.55 9.33 -39.35 -0.37 -4.92 16 20 C 0.15 1.97 6.60 -39.22 -0.26 1.71 16 21 C -0.14 -1.57 9.99 -39.43 -0.39 -1.96 16 22 C -0.07 -0.67 10.04 -39.61 -0.40 -1.07 16 23 C -0.14 -1.28 9.78 -39.53 -0.39 -1.67 16 24 C -0.05 -0.53 6.22 -39.54 -0.25 -0.78 16 25 Br -0.05 -0.50 33.70 -68.01 -2.29 -2.79 16 26 C -0.19 -2.25 7.98 -39.40 -0.31 -2.56 16 27 H 0.01 0.26 8.14 -51.93 -0.42 -0.16 16 28 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 29 H 0.03 0.66 7.67 -51.93 -0.40 0.26 16 30 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 31 H 0.05 0.67 6.95 -51.93 -0.36 0.31 16 32 H 0.09 1.43 7.02 -51.93 -0.36 1.06 16 33 H 0.05 0.66 6.01 -51.93 -0.31 0.34 16 34 H 0.07 0.98 8.14 -51.92 -0.42 0.56 16 35 H 0.09 1.02 4.53 -51.93 -0.24 0.78 16 36 H 0.07 0.71 6.91 -51.93 -0.36 0.35 16 37 H 0.14 1.48 8.06 -52.49 -0.42 1.06 16 38 H 0.14 0.84 8.06 -52.49 -0.42 0.42 16 39 H 0.13 0.98 8.06 -52.48 -0.42 0.55 16 40 H 0.14 1.54 5.43 -52.49 -0.28 1.26 16 LS Contribution 344.04 15.07 5.18 5.18 Total: -1.00 -31.33 344.04 -9.04 -40.37 By element: Atomic # 1 Polarization: 6.27 SS G_CDS: -4.91 Total: 1.36 kcal Atomic # 6 Polarization: -2.98 SS G_CDS: -1.55 Total: -4.54 kcal Atomic # 7 Polarization: -36.85 SS G_CDS: 0.14 Total: -36.71 kcal Atomic # 8 Polarization: -17.99 SS G_CDS: -0.59 Total: -18.59 kcal Atomic # 14 Polarization: 20.73 SS G_CDS: -5.02 Total: 15.71 kcal Atomic # 35 Polarization: -0.50 SS G_CDS: -2.29 Total: -2.79 kcal Total LS contribution 5.18 Total: 5.18 kcal Total: -31.33 -9.04 -40.37 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096426408.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.763 kcal (2) G-P(sol) polarization free energy of solvation -31.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -24.564 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.041 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.367 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.604 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds