Wall clock time and date at job start Tue Mar 31 2020 06:08:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31522 * 1 3 3 Si 1.86796 * 120.00167 * 2 1 4 4 H 1.48497 * 109.47117 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46834 * 299.99597 * 3 2 1 6 6 H 1.48500 * 109.47268 * 59.99466 * 3 2 1 7 7 C 1.37878 * 119.99524 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99723 * 179.97438 * 7 2 1 9 9 C 1.50696 * 120.00209 * 0.02562 * 7 2 1 10 10 C 1.53002 * 109.47410 * 179.97438 * 9 7 2 11 11 S 1.81389 * 109.47392 * 179.97438 * 10 9 7 12 12 O 1.42097 * 110.54583 * 68.37634 * 11 10 9 13 13 O 1.42105 * 110.54258 * 291.62468 * 11 10 9 14 14 N 1.65603 * 104.45259 * 180.02562 * 11 10 9 15 15 C 1.47419 * 125.65136 * 89.96882 * 14 11 10 16 16 C 1.54905 * 104.92834 * 155.80118 * 15 14 11 17 17 C 1.55448 * 101.45165 * 37.00468 * 16 15 14 18 18 H 1.08998 * 110.85957 * 82.96191 * 17 16 15 19 19 C 1.53001 * 110.70895 * 206.14261 * 17 16 15 20 20 S 1.81400 * 109.47488 * 288.55156 * 19 17 16 21 21 C 1.76200 * 102.99797 * 180.02562 * 20 19 17 22 22 C 1.38969 * 120.08332 * 359.72195 * 21 20 19 23 23 C 1.38084 * 119.91704 * 179.76841 * 22 21 20 24 24 C 1.38302 * 120.08285 * 0.48639 * 23 22 21 25 25 C 1.38298 * 120.15746 * 359.76950 * 24 23 22 26 26 C 1.38087 * 120.08585 * 359.97438 * 25 24 23 27 27 C 1.47026 * 125.64288 * 269.95330 * 14 11 10 28 28 H 0.97001 * 119.99524 * 0.02562 * 1 2 3 29 29 H 1.08998 * 109.47413 * 59.99539 * 9 7 2 30 30 H 1.09003 * 109.47092 * 299.99996 * 9 7 2 31 31 H 1.08998 * 109.46993 * 59.99547 * 10 9 7 32 32 H 1.09003 * 109.46681 * 300.00187 * 10 9 7 33 33 H 1.09002 * 110.36926 * 274.69587 * 15 14 11 34 34 H 1.08995 * 110.36556 * 36.90871 * 15 14 11 35 35 H 1.09002 * 111.00852 * 155.13877 * 16 15 14 36 36 H 1.09004 * 111.00578 * 278.99532 * 16 15 14 37 37 H 1.09002 * 109.46937 * 48.55046 * 19 17 16 38 38 H 1.09001 * 109.47052 * 168.54227 * 19 17 16 39 39 H 1.08000 * 120.03722 * 359.97438 * 22 21 20 40 40 H 1.08005 * 119.95568 * 180.22911 * 23 22 21 41 41 H 1.07992 * 119.92037 * 179.74346 * 24 23 22 42 42 H 1.08001 * 119.95823 * 179.97438 * 25 24 23 43 43 H 1.07994 * 120.04378 * 179.97438 * 26 25 24 44 44 H 1.08998 * 109.88266 * 300.48868 * 27 14 11 45 45 H 1.08997 * 109.88244 * 61.50225 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 3.7092 1.3463 0.0006 5 1 1.8905 2.3963 -1.2126 6 1 1.8904 2.3965 1.2124 7 6 2.0045 -1.1941 0.0005 8 1 3.0845 -1.1942 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2451 -3.6622 0.0005 11 16 1.3381 -5.2330 0.0013 12 8 0.6637 -5.4201 -1.2354 13 8 0.6645 -5.4193 1.2386 14 7 2.5202 -6.3928 0.0020 15 6 3.1339 -6.9935 1.2002 16 6 3.6619 -8.3717 0.7298 17 6 4.1572 -8.0389 -0.7056 18 1 5.1599 -7.6123 -0.6810 19 6 4.1231 -9.2853 -1.5923 20 16 5.4386 -10.4259 -1.0832 21 6 5.2457 -11.7765 -2.1982 22 6 4.2403 -11.7498 -3.1573 23 6 4.0952 -12.8080 -4.0325 24 6 4.9424 -13.8979 -3.9489 25 6 5.9407 -13.9302 -2.9923 26 6 6.0952 -12.8734 -2.1171 27 6 3.1311 -6.9942 -1.1925 28 1 -0.4849 0.8401 -0.0004 29 1 0.6246 -2.5571 -0.8896 30 1 0.6240 -2.5567 0.8903 31 1 2.8718 -3.6044 0.8905 32 1 2.8718 -3.6044 -0.8895 33 1 3.9566 -6.3735 1.5564 34 1 2.3883 -7.1207 1.9850 35 1 4.4840 -8.7111 1.3600 36 1 2.8601 -9.1097 0.7052 37 1 3.1559 -9.7775 -1.4902 38 1 4.2753 -8.9958 -2.6321 39 1 3.5755 -10.9010 -3.2201 40 1 3.3164 -12.7863 -4.7805 41 1 4.8239 -14.7259 -4.6320 42 1 6.6002 -14.7832 -2.9297 43 1 6.8747 -12.8995 -1.3701 44 1 2.3647 -7.4806 -1.7959 45 1 3.6322 -6.2248 -1.7799 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096428675.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:46 Heat of formation + Delta-G solvation = -57.186959 kcal Electronic energy + Delta-G solvation = -25837.422888 eV Core-core repulsion = 22072.564088 eV Total energy + Delta-G solvation = -3764.858799 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 355.106 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.28976 -38.86109 -36.63682 -35.46857 -33.90727 -32.99232 -31.46621 -31.32003 -31.17345 -29.68898 -26.62506 -25.59672 -23.19677 -22.96146 -22.50574 -21.50477 -20.74168 -18.66614 -18.14307 -17.55655 -17.01110 -16.55689 -16.28280 -15.51895 -15.43950 -15.20808 -14.88322 -14.60098 -14.58290 -14.42641 -13.91287 -13.84095 -13.44493 -13.35977 -13.27462 -12.98414 -12.63524 -12.47258 -12.03695 -11.77363 -11.67824 -11.61291 -11.59118 -11.42837 -11.34209 -11.17589 -11.10740 -10.97828 -10.93376 -10.48779 -10.41837 -10.40774 -10.14099 -9.78696 -9.40538 -9.33736 -8.78768 -8.52331 -7.75568 -6.14252 -4.19816 0.68224 0.80252 0.95016 1.12036 2.03614 3.00929 3.24069 3.30403 3.31388 3.34814 4.08339 4.18845 4.28441 4.34950 4.41185 4.43166 4.51774 4.61797 4.68699 4.85162 4.97126 5.03672 5.09123 5.11104 5.20954 5.21923 5.27483 5.32085 5.44972 5.55981 5.57698 5.63240 5.69276 5.71073 5.77854 5.84844 5.96308 5.96993 6.08833 6.11657 6.43756 6.46900 6.48036 7.27935 7.33781 7.78984 8.15656 8.83808 9.45069 10.96775 Molecular weight = 355.11amu Principal moments of inertia in cm(-1) A = 0.022807 B = 0.001798 C = 0.001787 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1227.423758 B =15567.646474 C =15662.699408 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.057 3.943 3 Si 0.900 3.100 4 H -0.272 1.272 5 H -0.282 1.282 6 H -0.282 1.282 7 C -0.520 4.520 8 H 0.062 0.938 9 C 0.027 3.973 10 C -0.588 4.588 11 S 2.607 3.393 12 O -0.962 6.962 13 O -0.961 6.961 14 N -1.019 6.019 15 C 0.114 3.886 16 C -0.123 4.123 17 C -0.083 4.083 18 H 0.097 0.903 19 C -0.100 4.100 20 S -0.109 6.109 21 C -0.083 4.083 22 C -0.134 4.134 23 C -0.100 4.100 24 C -0.128 4.128 25 C -0.103 4.103 26 C -0.103 4.103 27 C 0.131 3.869 28 H 0.265 0.735 29 H 0.033 0.967 30 H 0.034 0.966 31 H 0.119 0.881 32 H 0.119 0.881 33 H 0.067 0.933 34 H 0.086 0.914 35 H 0.086 0.914 36 H 0.079 0.921 37 H 0.093 0.907 38 H 0.094 0.906 39 H 0.125 0.875 40 H 0.126 0.874 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.073 0.927 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.084 -27.066 -4.535 30.403 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.145 4.145 3 Si 0.728 3.272 4 H -0.197 1.197 5 H -0.208 1.208 6 H -0.208 1.208 7 C -0.559 4.559 8 H 0.080 0.920 9 C -0.012 4.012 10 C -0.721 4.721 11 S 2.706 3.294 12 O -0.953 6.953 13 O -0.951 6.951 14 N -0.855 5.855 15 C -0.011 4.011 16 C -0.162 4.162 17 C -0.105 4.105 18 H 0.115 0.885 19 C -0.249 4.249 20 S 0.136 5.864 21 C -0.196 4.196 22 C -0.158 4.158 23 C -0.120 4.120 24 C -0.149 4.149 25 C -0.122 4.122 26 C -0.126 4.126 27 C 0.004 3.996 28 H 0.074 0.926 29 H 0.052 0.948 30 H 0.052 0.948 31 H 0.138 0.862 32 H 0.137 0.863 33 H 0.086 0.914 34 H 0.104 0.896 35 H 0.105 0.895 36 H 0.097 0.903 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.143 0.857 40 H 0.144 0.856 41 H 0.142 0.858 42 H 0.144 0.856 43 H 0.145 0.855 44 H 0.091 0.909 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 12.696 -26.835 -3.581 29.902 hybrid contribution 0.133 1.062 -1.139 1.563 sum 12.829 -25.773 -4.721 29.174 Atomic orbital electron populations 1.69970 1.06109 1.27097 1.49632 1.25077 0.94985 0.99570 0.94897 0.86405 0.79915 0.83139 0.77774 1.19657 1.20790 1.20779 1.21037 0.93097 0.89733 1.52057 0.91994 1.18978 0.92729 0.90604 0.98884 1.30484 1.13702 1.17930 1.10025 1.05294 0.74105 0.75948 0.74025 1.93532 1.71005 1.85226 1.45497 1.93535 1.70933 1.85233 1.45429 1.58910 1.58385 1.56109 1.12130 1.22007 0.97851 0.93327 0.87909 1.22940 1.01304 0.97054 0.94911 1.22056 1.00501 0.92951 0.94943 0.88473 1.23759 1.00209 0.97483 1.03416 1.85527 1.43529 1.14228 1.43109 1.21834 0.99404 0.98655 0.99673 1.21242 0.98324 0.99994 0.96258 1.21105 0.99019 0.93440 0.98394 1.21202 0.96003 0.98568 0.99095 1.21107 0.98049 0.98042 0.95031 1.20781 0.99126 0.92702 1.00037 1.21618 0.95210 0.95309 0.87505 0.92576 0.94848 0.94815 0.86246 0.86304 0.91430 0.89613 0.89519 0.90253 0.88812 0.88782 0.85691 0.85649 0.85829 0.85555 0.85516 0.90906 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -26.43 13.29 55.43 0.74 -25.69 16 2 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 3 Si 0.90 21.17 29.54 -169.99 -5.02 16.15 16 4 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 5 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 6 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 7 C -0.52 -14.36 9.11 -34.44 -0.31 -14.67 16 8 H 0.06 1.62 7.74 -52.49 -0.41 1.22 16 9 C 0.03 0.69 4.98 -27.88 -0.14 0.55 16 10 C -0.59 -11.18 6.12 37.16 0.23 -10.96 16 11 S 2.61 46.57 5.65 -107.50 -0.61 45.96 16 12 O -0.96 -19.77 17.60 -57.54 -1.01 -20.78 16 13 O -0.96 -19.80 17.28 -57.54 -0.99 -20.79 16 14 N -1.02 -13.43 3.62 -111.43 -0.40 -13.84 16 15 C 0.11 1.23 7.06 -2.53 -0.02 1.21 16 16 C -0.12 -1.04 6.26 -24.43 -0.15 -1.19 16 17 C -0.08 -0.68 2.93 -88.63 -0.26 -0.94 16 18 H 0.10 0.73 8.14 -51.93 -0.42 0.31 16 19 C -0.10 -0.74 3.67 37.16 0.14 -0.60 16 20 S -0.11 -0.90 21.64 -107.50 -2.33 -3.23 16 21 C -0.08 -0.72 6.11 -39.04 -0.24 -0.96 16 22 C -0.13 -1.09 9.36 -39.37 -0.37 -1.46 16 23 C -0.10 -0.71 10.04 -39.61 -0.40 -1.11 16 24 C -0.13 -0.84 10.04 -39.54 -0.40 -1.24 16 25 C -0.10 -0.68 10.04 -39.61 -0.40 -1.08 16 26 C -0.10 -0.81 9.79 -39.36 -0.39 -1.19 16 27 C 0.13 1.39 6.49 -3.06 -0.02 1.37 16 28 H 0.26 7.34 8.31 -40.82 -0.34 7.00 16 29 H 0.03 0.90 8.14 -51.93 -0.42 0.47 16 30 H 0.03 0.91 8.14 -51.93 -0.42 0.48 16 31 H 0.12 2.05 8.14 -51.92 -0.42 1.63 16 32 H 0.12 2.03 8.14 -51.92 -0.42 1.61 16 33 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 34 H 0.09 0.98 7.66 -51.93 -0.40 0.58 16 35 H 0.09 0.61 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.68 7.95 -51.93 -0.41 0.27 16 37 H 0.09 0.68 7.60 -51.92 -0.39 0.29 16 38 H 0.09 0.62 7.76 -51.92 -0.40 0.22 16 39 H 0.13 0.89 5.88 -52.49 -0.31 0.58 16 40 H 0.13 0.66 8.06 -52.48 -0.42 0.24 16 41 H 0.12 0.54 8.06 -52.49 -0.42 0.12 16 42 H 0.13 0.55 8.06 -52.49 -0.42 0.13 16 43 H 0.13 0.85 8.06 -52.49 -0.42 0.42 16 44 H 0.07 0.78 7.82 -51.93 -0.41 0.37 16 45 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 LS Contribution 395.48 15.07 5.96 5.96 Total: -1.00 -35.08 395.48 -13.43 -48.51 By element: Atomic # 1 Polarization: 5.42 SS G_CDS: -6.94 Total: -1.52 kcal Atomic # 6 Polarization: -27.92 SS G_CDS: -2.82 Total: -30.74 kcal Atomic # 7 Polarization: -39.86 SS G_CDS: 0.33 Total: -39.53 kcal Atomic # 8 Polarization: -39.56 SS G_CDS: -2.01 Total: -41.57 kcal Atomic # 14 Polarization: 21.17 SS G_CDS: -5.02 Total: 16.15 kcal Atomic # 16 Polarization: 45.67 SS G_CDS: -2.93 Total: 42.73 kcal Total LS contribution 5.96 Total: 5.96 kcal Total: -35.08 -13.43 -48.51 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096428675.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -8.678 kcal (2) G-P(sol) polarization free energy of solvation -35.081 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.759 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.428 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -48.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -57.187 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds