Wall clock time and date at job start Tue Mar 31 2020 06:08:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31516 * 1 3 3 Si 1.86800 * 120.00017 * 2 1 4 4 H 1.48501 * 109.47057 * 359.97438 * 3 2 1 5 5 H 1.48500 * 109.47389 * 119.99828 * 3 2 1 6 6 H 1.48504 * 109.47102 * 240.00177 * 3 2 1 7 7 C 1.37871 * 120.00217 * 179.97438 * 2 1 3 8 8 H 1.08005 * 120.00140 * 180.02562 * 7 2 1 9 9 C 1.50706 * 120.00102 * 0.02562 * 7 2 1 10 10 C 1.52998 * 109.47348 * 179.97438 * 9 7 2 11 11 S 1.81399 * 109.47111 * 180.02562 * 10 9 7 12 12 O 1.42106 * 110.54100 * 291.62280 * 11 10 9 13 13 O 1.42100 * 110.54266 * 68.37418 * 11 10 9 14 14 N 1.65599 * 104.44810 * 180.02562 * 11 10 9 15 15 C 1.47023 * 125.64514 * 269.69018 * 14 11 10 16 16 C 1.54331 * 107.26417 * 178.85261 * 15 14 11 17 17 C 1.55153 * 103.02217 * 338.13727 * 16 15 14 18 18 H 1.08999 * 111.00634 * 277.23599 * 17 16 15 19 19 C 1.53004 * 111.00281 * 153.38144 * 17 16 15 20 20 S 1.81400 * 109.47029 * 72.80870 * 19 17 16 21 21 C 1.76198 * 102.99782 * 179.97438 * 20 19 17 22 22 C 1.38980 * 120.08110 * 359.73000 * 21 20 19 23 23 C 1.38082 * 119.91505 * 179.76437 * 22 21 20 24 24 C 1.38299 * 120.08460 * 0.48108 * 23 22 21 25 25 C 1.38311 * 120.15946 * 359.77152 * 24 23 22 26 26 C 1.38076 * 120.07732 * 359.97438 * 25 24 23 27 27 C 1.47417 * 125.65024 * 90.00130 * 14 11 10 28 28 H 0.97001 * 119.99646 * 179.97438 * 1 2 3 29 29 H 1.09001 * 109.46564 * 300.00328 * 9 7 2 30 30 H 1.09006 * 109.46863 * 59.99666 * 9 7 2 31 31 H 1.09000 * 109.46986 * 300.00089 * 10 9 7 32 32 H 1.09002 * 109.46857 * 60.00224 * 10 9 7 33 33 H 1.09006 * 109.87996 * 298.39450 * 15 14 11 34 34 H 1.08993 * 109.88440 * 59.56144 * 15 14 11 35 35 H 1.08998 * 110.84948 * 219.67279 * 16 15 14 36 36 H 1.09004 * 110.66988 * 96.52354 * 16 15 14 37 37 H 1.09010 * 109.46595 * 192.80700 * 19 17 16 38 38 H 1.08999 * 109.47153 * 312.80354 * 19 17 16 39 39 H 1.07996 * 120.04009 * 359.97438 * 22 21 20 40 40 H 1.08000 * 119.95909 * 180.22618 * 23 22 21 41 41 H 1.08001 * 119.92050 * 179.74457 * 24 23 22 42 42 H 1.07997 * 119.95944 * 179.97438 * 25 24 23 43 43 H 1.08004 * 120.03672 * 180.02562 * 26 25 24 44 44 H 1.08998 * 110.36969 * 322.92580 * 27 14 11 45 45 H 1.08997 * 110.36944 * 85.25184 * 27 14 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2492 1.6177 0.0000 4 1 1.2842 2.7465 -0.0006 5 1 3.1029 1.6965 1.2125 6 1 3.1029 1.6964 -1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1940 0.0010 9 6 1.2511 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 16 1.3384 -5.2330 -0.0002 12 8 0.6640 -5.4200 1.2366 13 8 0.6648 -5.4193 -1.2375 14 7 2.5206 -6.3927 0.0006 15 6 3.1286 -6.9972 -1.1938 16 6 4.1961 -7.9996 -0.7068 17 6 4.5195 -7.4977 0.7253 18 1 5.2431 -6.6830 0.6996 19 6 5.0180 -8.6435 1.6084 20 16 6.7017 -9.1010 1.1120 21 6 7.0998 -10.4109 2.2212 22 6 6.1764 -10.8201 3.1759 23 6 6.4900 -11.8502 4.0402 24 6 7.7250 -12.4680 3.9633 25 6 8.6484 -12.0599 3.0179 26 6 8.3398 -11.0340 2.1469 27 6 3.1331 -6.9944 1.1989 28 1 -0.4850 -0.8401 -0.0004 29 1 0.6241 -2.5566 0.8903 30 1 0.6247 -2.5571 -0.8897 31 1 2.8720 -3.6043 -0.8894 32 1 2.8720 -3.6043 0.8906 33 1 2.3667 -7.5170 -1.7748 34 1 3.5985 -6.2244 -1.8020 35 1 5.0831 -7.9594 -1.3389 36 1 3.7899 -9.0108 -0.6785 37 1 5.0206 -8.3241 2.6507 38 1 4.3589 -9.5039 1.4936 39 1 5.2134 -10.3352 3.2394 40 1 5.7716 -12.1713 4.7799 41 1 7.9691 -13.2707 4.6433 42 1 9.6120 -12.5443 2.9610 43 1 9.0612 -10.7161 1.4086 44 1 3.2488 -6.2457 1.9825 45 1 2.5285 -7.8281 1.5559 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096428677.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:08:49 Heat of formation + Delta-G solvation = -60.715308 kcal Electronic energy + Delta-G solvation = -25904.284928 eV Core-core repulsion = 22139.273128 eV Total energy + Delta-G solvation = -3765.011800 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 355.106 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -39.31256 -38.92667 -36.73950 -35.57660 -34.27237 -33.05524 -31.49065 -31.34496 -31.04478 -29.75488 -26.69611 -25.08544 -23.23186 -22.99571 -22.55563 -21.77032 -20.83947 -18.76895 -18.16199 -17.68905 -17.00881 -16.72475 -16.41901 -15.83777 -15.51468 -15.28375 -15.01282 -14.64056 -14.45409 -13.89593 -13.85233 -13.79389 -13.59011 -13.47353 -13.30570 -13.19844 -12.86094 -12.65139 -12.12366 -12.01338 -11.77112 -11.70117 -11.61973 -11.51083 -11.40574 -11.20030 -11.05423 -11.00640 -10.56384 -10.51570 -10.50265 -10.36321 -10.16388 -10.08805 -9.42925 -9.08480 -8.62791 -8.47599 -7.77743 -6.49085 -4.22018 0.58042 0.77945 0.92721 1.08746 2.01227 2.90550 3.28098 3.37919 3.39696 3.58898 4.02455 4.11263 4.17437 4.40188 4.40592 4.46336 4.49318 4.54507 4.66241 4.82313 4.94372 4.95523 5.00583 5.07693 5.14000 5.23614 5.26497 5.29715 5.36772 5.47378 5.51795 5.53671 5.60961 5.62363 5.76719 5.82501 5.90993 5.94003 6.04539 6.06529 6.31276 6.34863 6.45719 6.94107 7.04399 7.94414 8.28023 8.71003 9.50276 10.90672 Molecular weight = 355.11amu Principal moments of inertia in cm(-1) A = 0.016826 B = 0.001933 C = 0.001841 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1663.674039 B =14479.497087 C =15203.001317 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.905 5.905 2 C 0.016 3.984 3 Si 1.073 2.927 4 H -0.280 1.280 5 H -0.286 1.286 6 H -0.286 1.286 7 C -0.600 4.600 8 H 0.055 0.945 9 C 0.014 3.986 10 C -0.582 4.582 11 S 2.606 3.394 12 O -0.961 6.961 13 O -0.960 6.960 14 N -1.018 6.018 15 C 0.120 3.880 16 C -0.123 4.123 17 C -0.088 4.088 18 H 0.099 0.901 19 C -0.099 4.099 20 S -0.107 6.107 21 C -0.083 4.083 22 C -0.135 4.135 23 C -0.100 4.100 24 C -0.128 4.128 25 C -0.102 4.102 26 C -0.102 4.102 27 C 0.134 3.866 28 H 0.270 0.730 29 H 0.024 0.976 30 H 0.024 0.976 31 H 0.120 0.880 32 H 0.120 0.880 33 H 0.073 0.927 34 H 0.067 0.933 35 H 0.086 0.914 36 H 0.078 0.922 37 H 0.094 0.906 38 H 0.093 0.907 39 H 0.125 0.875 40 H 0.125 0.875 41 H 0.124 0.876 42 H 0.127 0.873 43 H 0.127 0.873 44 H 0.080 0.920 45 H 0.071 0.929 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.894 -25.571 4.737 31.011 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.540 5.540 2 C -0.189 4.189 3 Si 0.901 3.099 4 H -0.205 1.205 5 H -0.213 1.213 6 H -0.213 1.213 7 C -0.639 4.639 8 H 0.073 0.927 9 C -0.025 4.025 10 C -0.715 4.715 11 S 2.705 3.295 12 O -0.952 6.952 13 O -0.951 6.951 14 N -0.854 5.854 15 C -0.006 4.006 16 C -0.161 4.161 17 C -0.109 4.109 18 H 0.117 0.883 19 C -0.248 4.248 20 S 0.138 5.862 21 C -0.196 4.196 22 C -0.159 4.159 23 C -0.120 4.120 24 C -0.149 4.149 25 C -0.122 4.122 26 C -0.126 4.126 27 C 0.007 3.993 28 H 0.081 0.919 29 H 0.042 0.958 30 H 0.042 0.958 31 H 0.139 0.861 32 H 0.138 0.862 33 H 0.091 0.909 34 H 0.086 0.914 35 H 0.104 0.896 36 H 0.097 0.903 37 H 0.113 0.887 38 H 0.112 0.888 39 H 0.143 0.857 40 H 0.143 0.857 41 H 0.142 0.858 42 H 0.145 0.855 43 H 0.145 0.855 44 H 0.098 0.902 45 H 0.089 0.911 Dipole moment (debyes) X Y Z Total from point charges 16.267 -23.497 3.779 28.827 hybrid contribution 0.145 -2.002 1.084 2.281 sum 16.413 -25.498 4.863 30.711 Atomic orbital electron populations 1.70787 1.06869 1.30792 1.45531 1.25982 0.96545 1.02933 0.93449 0.83480 0.74866 0.74977 0.76607 1.20532 1.21279 1.21277 1.21832 0.94336 0.90726 1.57039 0.92683 1.19079 0.93392 0.92403 0.97586 1.30370 1.13426 1.17467 1.10241 1.05331 0.74148 0.75933 0.74055 1.93544 1.70942 1.85219 1.45464 1.93542 1.70954 1.85184 1.45372 1.58887 1.58623 1.55692 1.12244 1.21681 0.95505 0.96141 0.87231 1.22750 0.98875 0.99143 0.95369 1.22186 0.97310 0.96683 0.94759 0.88288 1.23672 0.95634 1.01940 1.03512 1.85602 1.17828 1.38953 1.43828 1.21844 0.97766 1.00262 0.99725 1.21228 0.99190 0.99040 0.96394 1.21095 0.96925 0.95535 0.98434 1.21206 0.94042 1.00491 0.99134 1.21112 0.99524 0.96488 0.95061 1.20786 0.95088 0.96680 1.00061 1.21882 0.91591 0.98340 0.87503 0.91948 0.95770 0.95765 0.86115 0.86161 0.90881 0.91414 0.89588 0.90318 0.88729 0.88834 0.85732 0.85679 0.85823 0.85530 0.85494 0.90182 0.91100 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -27.66 13.65 55.43 0.76 -26.90 16 2 C 0.02 0.45 5.46 -17.82 -0.10 0.36 16 3 Si 1.07 24.84 29.90 -169.99 -5.08 19.76 16 4 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 5 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 6 H -0.29 -6.28 7.11 56.52 0.40 -5.88 16 7 C -0.60 -16.82 9.11 -34.44 -0.31 -17.13 16 8 H 0.05 1.48 7.74 -52.48 -0.41 1.07 16 9 C 0.01 0.37 4.29 -27.88 -0.12 0.25 16 10 C -0.58 -11.17 6.12 37.16 0.23 -10.94 16 11 S 2.61 46.38 5.65 -107.50 -0.61 45.77 16 12 O -0.96 -19.59 17.60 -57.54 -1.01 -20.61 16 13 O -0.96 -19.75 17.60 -57.54 -1.01 -20.76 16 14 N -1.02 -13.40 3.62 -111.42 -0.40 -13.80 16 15 C 0.12 1.30 6.90 -3.06 -0.02 1.28 16 16 C -0.12 -0.99 6.17 -24.89 -0.15 -1.15 16 17 C -0.09 -0.72 3.00 -88.47 -0.27 -0.99 16 18 H 0.10 0.82 8.14 -51.93 -0.42 0.40 16 19 C -0.10 -0.70 3.82 37.16 0.14 -0.55 16 20 S -0.11 -0.89 21.69 -107.50 -2.33 -3.22 16 21 C -0.08 -0.71 6.11 -39.03 -0.24 -0.95 16 22 C -0.13 -1.05 9.36 -39.36 -0.37 -1.41 16 23 C -0.10 -0.69 10.04 -39.62 -0.40 -1.08 16 24 C -0.13 -0.82 10.04 -39.53 -0.40 -1.21 16 25 C -0.10 -0.67 10.04 -39.61 -0.40 -1.07 16 26 C -0.10 -0.80 9.79 -39.37 -0.39 -1.18 16 27 C 0.13 1.41 6.36 -2.53 -0.02 1.39 16 28 H 0.27 8.24 7.22 -40.82 -0.29 7.95 16 29 H 0.02 0.64 8.01 -51.93 -0.42 0.22 16 30 H 0.02 0.64 8.01 -51.93 -0.42 0.22 16 31 H 0.12 2.12 8.14 -51.92 -0.42 1.70 16 32 H 0.12 2.10 8.14 -51.92 -0.42 1.67 16 33 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 34 H 0.07 0.69 8.14 -51.93 -0.42 0.26 16 35 H 0.09 0.62 8.14 -51.93 -0.42 0.19 16 36 H 0.08 0.58 7.91 -51.93 -0.41 0.17 16 37 H 0.09 0.60 7.74 -51.92 -0.40 0.20 16 38 H 0.09 0.59 7.59 -51.92 -0.39 0.20 16 39 H 0.12 0.82 5.88 -52.49 -0.31 0.51 16 40 H 0.13 0.61 8.06 -52.49 -0.42 0.19 16 41 H 0.12 0.52 8.06 -52.49 -0.42 0.10 16 42 H 0.13 0.55 8.06 -52.49 -0.42 0.12 16 43 H 0.13 0.85 8.06 -52.48 -0.42 0.43 16 44 H 0.08 0.81 8.14 -51.93 -0.42 0.38 16 45 H 0.07 0.69 8.04 -51.93 -0.42 0.27 16 LS Contribution 395.02 15.07 5.95 5.95 Total: -1.00 -35.94 395.02 -13.46 -49.40 By element: Atomic # 1 Polarization: 5.71 SS G_CDS: -6.91 Total: -1.20 kcal Atomic # 6 Polarization: -31.60 SS G_CDS: -2.80 Total: -34.40 kcal Atomic # 7 Polarization: -41.06 SS G_CDS: 0.35 Total: -40.70 kcal Atomic # 8 Polarization: -39.34 SS G_CDS: -2.03 Total: -41.36 kcal Atomic # 14 Polarization: 24.84 SS G_CDS: -5.08 Total: 19.76 kcal Atomic # 16 Polarization: 45.50 SS G_CDS: -2.94 Total: 42.56 kcal Total LS contribution 5.95 Total: 5.95 kcal Total: -35.94 -13.46 -49.40 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096428677.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.315 kcal (2) G-P(sol) polarization free energy of solvation -35.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.457 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -49.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -60.715 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds