Wall clock time and date at job start Tue Mar 31 2020 05:43:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 C 1.39867 * 126.03833 * 2 1 4 4 N 1.30840 * 108.20104 * 179.74252 * 3 2 1 5 5 N 1.40089 * 108.20402 * 0.40573 * 4 3 2 6 6 C 1.46495 * 126.03664 * 179.84765 * 5 4 3 7 7 C 1.50701 * 109.47664 * 304.69553 * 6 5 4 8 8 C 1.38282 * 119.92712 * 89.99615 * 7 6 5 9 9 C 1.38118 * 120.06611 * 180.02562 * 8 7 6 10 10 C 1.38868 * 119.93078 * 359.97438 * 9 8 7 11 11 N 1.39941 * 120.06955 * 180.02562 * 10 9 8 12 12 C 1.34778 * 120.00176 * 143.31587 * 11 10 9 13 13 O 1.21592 * 119.99772 * 3.31426 * 12 11 10 14 14 N 1.34771 * 120.00382 * 183.31616 * 12 11 10 15 15 C 1.46502 * 119.99735 * 356.73001 * 14 12 11 16 16 C 1.50701 * 109.46844 * 90.00452 * 15 14 12 17 17 H 1.08000 * 120.00433 * 359.97438 * 16 15 14 18 18 C 1.37879 * 119.99611 * 179.97438 * 16 15 14 19 19 N 1.31514 * 120.00493 * 359.97438 * 18 16 15 20 20 Si 1.86800 * 119.99708 * 179.97438 * 18 16 15 21 21 H 1.48503 * 109.47463 * 89.99901 * 20 18 16 22 22 H 1.48501 * 109.47110 * 209.99965 * 20 18 16 23 23 H 1.48504 * 109.47026 * 329.99865 * 20 18 16 24 24 C 1.46499 * 120.00184 * 176.73576 * 14 12 11 25 25 C 1.53004 * 117.50009 * 20.62438 * 24 14 12 26 26 C 1.52997 * 117.49650 * 312.00365 * 24 14 12 27 27 C 1.38868 * 119.86055 * 0.28066 * 10 9 8 28 28 C 1.38117 * 119.92720 * 359.42056 * 27 10 9 29 29 C 1.34945 * 107.92628 * 359.59352 * 5 4 3 30 30 H 1.09002 * 109.46668 * 269.99254 * 1 2 3 31 31 H 1.08994 * 109.47282 * 29.99307 * 1 2 3 32 32 H 1.09001 * 109.46885 * 149.99642 * 1 2 3 33 33 H 1.08000 * 125.90235 * 0.02562 * 3 2 1 34 34 H 1.09006 * 109.47627 * 184.69118 * 6 5 4 35 35 H 1.09006 * 109.47177 * 64.69755 * 6 5 4 36 36 H 1.07993 * 119.96789 * 359.97438 * 8 7 6 37 37 H 1.08001 * 120.03171 * 180.02562 * 9 8 7 38 38 H 0.96999 * 119.99981 * 323.31958 * 11 10 9 39 39 H 1.09008 * 109.46895 * 210.00161 * 15 14 12 40 40 H 1.08994 * 109.47620 * 330.00094 * 15 14 12 41 41 H 0.96997 * 119.99921 * 179.97438 * 19 18 16 42 42 H 1.09000 * 115.54976 * 166.33675 * 24 14 12 43 43 H 1.09002 * 117.49694 * 0.02562 * 25 24 14 44 44 H 1.08997 * 117.49652 * 145.01969 * 25 24 14 45 45 H 1.09002 * 117.50021 * 214.98042 * 26 24 14 46 46 H 1.09003 * 117.49976 * 359.97438 * 26 24 14 47 47 H 1.07993 * 120.03768 * 179.69893 * 27 10 9 48 48 H 1.08000 * 119.96838 * 180.27585 * 28 27 10 49 49 H 1.08001 * 126.12773 * 180.26484 * 29 5 4 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.3299 1.1310 0.0000 4 7 3.5754 0.7302 0.0056 5 7 3.5844 -0.6706 -0.0001 6 6 4.7745 -1.5248 0.0002 7 6 5.6580 -1.1561 -1.1637 8 6 6.6347 -0.1895 -1.0093 9 6 7.4457 0.1511 -2.0742 10 6 7.2796 -0.4786 -3.3007 11 7 8.1000 -0.1361 -4.3815 12 6 8.5044 -1.0859 -5.2481 13 8 8.1079 -2.2288 -5.1260 14 7 9.3481 -0.7688 -6.2500 15 6 9.7694 0.6214 -6.4406 16 6 11.0210 0.8808 -5.6423 17 1 11.4586 0.0896 -5.0518 18 6 11.6073 2.1285 -5.6659 19 7 11.0747 3.0920 -6.3854 20 14 13.1584 2.4504 -4.6759 21 1 14.3495 2.1483 -5.5097 22 1 13.1935 3.8756 -4.2604 23 1 13.1651 1.5831 -3.4705 24 6 9.8440 -1.8142 -7.1486 25 6 9.0406 -3.1136 -7.2320 26 6 10.3898 -3.0933 -6.5110 27 6 6.2943 -1.4451 -3.4540 28 6 5.4907 -1.7856 -2.3835 29 6 2.3032 -1.0942 -0.0002 30 1 -0.3633 -0.0001 1.0277 31 1 -0.3633 0.8900 -0.5137 32 1 -0.3633 -0.8900 -0.5139 33 1 1.9951 2.1578 0.0004 34 1 4.4728 -2.5685 -0.0891 35 1 5.3229 -1.3837 0.9316 36 1 6.7631 0.3002 -0.0554 37 1 8.2086 0.9058 -1.9529 38 1 8.3777 0.7848 -4.5069 39 1 9.9691 0.7989 -7.4974 40 1 8.9779 1.2904 -6.1031 41 1 11.4871 3.9698 -6.4017 42 1 10.3262 -1.4608 -8.0601 43 1 8.1428 -3.1905 -6.6186 44 1 8.9939 -3.6153 -8.1986 45 1 11.2309 -3.5818 -7.0031 46 1 10.3804 -3.1569 -5.4228 47 1 6.1595 -1.9331 -4.4078 48 1 4.7271 -2.5403 -2.5007 49 1 1.9724 -2.1223 0.0001 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096434831.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:43:51 Heat of formation + Delta-G solvation = 119.791034 kcal Electronic energy + Delta-G solvation = -30552.472443 eV Core-core repulsion = 26482.935671 eV Total energy + Delta-G solvation = -4069.536772 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.180 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -41.28538 -40.40013 -38.87201 -36.42752 -34.87701 -34.29297 -33.10302 -32.20398 -31.67720 -30.74887 -29.85348 -27.29063 -26.87669 -25.24501 -23.20536 -22.77144 -22.63875 -21.81253 -21.47772 -20.69580 -20.16930 -19.37726 -17.46738 -16.95960 -16.92407 -16.49725 -16.01065 -15.50407 -15.11858 -14.84528 -14.67000 -14.51259 -14.32882 -14.04375 -13.66212 -13.55268 -13.29967 -13.24251 -13.09018 -12.94300 -12.65109 -12.42091 -12.32740 -12.19235 -12.04543 -11.77510 -11.53397 -11.25603 -11.00382 -10.95849 -10.83991 -10.67431 -10.57730 -10.30899 -9.82974 -9.73094 -9.66887 -9.49496 -9.07525 -8.69707 -8.63210 -8.41291 -7.91201 -7.47518 -6.27109 -4.36021 1.30879 1.63649 1.84861 2.56976 2.72046 3.16944 3.17875 3.25554 3.30269 3.59625 4.06779 4.22947 4.35415 4.44770 4.61771 4.67464 4.71571 4.90255 5.05357 5.06419 5.11654 5.15182 5.26232 5.34280 5.43618 5.52299 5.52943 5.60412 5.65409 5.68730 5.79812 5.84295 5.88867 6.02343 6.14979 6.18643 6.22472 6.42100 6.49123 6.58337 6.63036 6.65892 6.69255 6.79996 6.92568 6.95158 7.03070 7.34313 7.37688 7.66028 7.67654 7.68963 7.92820 8.44880 8.75098 9.14484 9.33550 10.78731 Molecular weight = 354.18amu Principal moments of inertia in cm(-1) A = 0.011552 B = 0.002442 C = 0.002167 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2423.143209 B =11464.057457 C =12915.432389 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 C -0.248 4.248 3 C 0.041 3.959 4 N -0.281 5.281 5 N -0.363 5.363 6 C 0.182 3.818 7 C -0.146 4.146 8 C -0.063 4.063 9 C -0.154 4.154 10 C 0.197 3.803 11 N -0.683 5.683 12 C 0.710 3.290 13 O -0.596 6.596 14 N -0.581 5.581 15 C 0.240 3.760 16 C -0.540 4.540 17 H 0.063 0.937 18 C 0.065 3.935 19 N -0.891 5.891 20 Si 0.898 3.102 21 H -0.278 1.278 22 H -0.284 1.284 23 H -0.273 1.273 24 C 0.106 3.894 25 C -0.202 4.202 26 C -0.190 4.190 27 C -0.126 4.126 28 C -0.082 4.082 29 C 0.050 3.950 30 H 0.057 0.943 31 H 0.061 0.939 32 H 0.057 0.943 33 H 0.179 0.821 34 H 0.101 0.899 35 H 0.090 0.910 36 H 0.123 0.877 37 H 0.128 0.872 38 H 0.419 0.581 39 H 0.042 0.958 40 H 0.032 0.968 41 H 0.267 0.733 42 H 0.126 0.874 43 H 0.137 0.863 44 H 0.079 0.921 45 H 0.087 0.913 46 H 0.092 0.908 47 H 0.139 0.861 48 H 0.117 0.883 49 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.731 -7.930 10.088 20.301 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.128 4.128 2 C -0.260 4.260 3 C -0.145 4.145 4 N -0.102 5.102 5 N -0.145 5.145 6 C 0.061 3.939 7 C -0.148 4.148 8 C -0.082 4.082 9 C -0.175 4.175 10 C 0.100 3.900 11 N -0.332 5.332 12 C 0.413 3.587 13 O -0.478 6.478 14 N -0.312 5.312 15 C 0.120 3.880 16 C -0.579 4.579 17 H 0.081 0.919 18 C -0.138 4.138 19 N -0.529 5.529 20 Si 0.726 3.274 21 H -0.204 1.204 22 H -0.210 1.210 23 H -0.198 1.198 24 C 0.000 4.000 25 C -0.240 4.240 26 C -0.229 4.229 27 C -0.147 4.147 28 C -0.101 4.101 29 C -0.096 4.096 30 H 0.076 0.924 31 H 0.080 0.920 32 H 0.076 0.924 33 H 0.195 0.805 34 H 0.119 0.881 35 H 0.108 0.892 36 H 0.141 0.859 37 H 0.146 0.854 38 H 0.259 0.741 39 H 0.060 0.940 40 H 0.050 0.950 41 H 0.076 0.924 42 H 0.144 0.856 43 H 0.154 0.846 44 H 0.097 0.903 45 H 0.105 0.895 46 H 0.110 0.890 47 H 0.157 0.843 48 H 0.135 0.865 49 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -14.530 -8.220 10.025 19.473 hybrid contribution 0.498 0.612 0.316 0.850 sum -14.033 -7.607 10.341 19.019 Atomic orbital electron populations 1.20020 0.89590 1.01999 1.01220 1.20120 0.96954 0.92000 1.16885 1.23791 0.90135 0.99711 1.00865 1.77404 1.20939 0.88894 1.22985 1.48781 1.05066 1.04746 1.55905 1.20526 0.83087 0.92231 0.98017 1.19530 0.99297 1.00952 0.94981 1.20676 0.93899 0.95304 0.98312 1.20982 1.01801 1.03488 0.91243 1.17672 0.89766 0.95871 0.86679 1.43006 1.51440 1.12616 1.26107 1.15839 0.79399 0.83770 0.79653 1.90661 1.62654 1.18868 1.75585 1.46830 1.45529 1.10313 1.28499 1.19407 0.95339 0.74644 0.98627 1.21506 1.10266 0.96874 1.29227 0.91900 1.24958 0.97622 0.95829 0.95389 1.69915 1.40168 1.03077 1.39692 0.86483 0.83045 0.77503 0.80405 1.20437 1.21006 1.19768 1.21336 1.01843 0.82428 0.94410 1.23907 0.98602 0.99820 1.01665 1.23143 0.96795 1.02349 1.00591 1.21219 0.94099 0.99136 1.00238 1.20789 0.98445 0.98927 0.91981 1.22322 0.84397 0.99906 1.03025 0.92417 0.92004 0.92368 0.80451 0.88093 0.89199 0.85938 0.85357 0.74094 0.94006 0.95038 0.92367 0.85627 0.84574 0.90301 0.89495 0.88990 0.84337 0.86456 0.81339 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.49 10.37 36.01 0.37 -0.12 16 2 C -0.25 -2.44 6.10 -105.05 -0.64 -3.08 16 3 C 0.04 0.47 11.96 -17.36 -0.21 0.26 16 4 N -0.28 -3.77 12.41 30.62 0.38 -3.39 16 5 N -0.36 -4.11 3.67 -62.54 -0.23 -4.34 16 6 C 0.18 1.75 6.63 -5.20 -0.03 1.71 16 7 C -0.15 -1.84 5.32 -104.59 -0.56 -2.39 16 8 C -0.06 -0.86 9.69 -39.61 -0.38 -1.24 16 9 C -0.15 -2.41 9.97 -39.39 -0.39 -2.81 16 10 C 0.20 3.44 6.26 -83.69 -0.52 2.92 16 11 N -0.68 -13.11 5.20 -14.22 -0.07 -13.19 16 12 C 0.71 14.71 7.83 -86.92 -0.68 14.03 16 13 O -0.60 -12.56 9.68 5.28 0.05 -12.51 16 14 N -0.58 -12.16 2.83 -173.17 -0.49 -12.65 16 15 C 0.24 5.54 4.92 -5.19 -0.03 5.51 16 16 C -0.54 -13.70 9.39 -34.44 -0.32 -14.03 16 17 H 0.06 1.66 7.81 -52.49 -0.41 1.25 16 18 C 0.07 1.69 5.46 -17.82 -0.10 1.59 16 19 N -0.89 -23.90 13.29 55.43 0.74 -23.17 16 20 Si 0.90 20.34 29.54 -169.99 -5.02 15.32 16 21 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 22 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 23 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 24 C 0.11 1.98 6.63 -67.93 -0.45 1.53 16 25 C -0.20 -3.43 9.65 -26.73 -0.26 -3.69 16 26 C -0.19 -3.35 9.85 -26.73 -0.26 -3.61 16 27 C -0.13 -2.07 8.67 -39.39 -0.34 -2.42 16 28 C -0.08 -1.11 9.69 -39.61 -0.38 -1.50 16 29 C 0.05 0.47 11.36 -17.22 -0.20 0.28 16 30 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.18 1.54 8.06 -52.49 -0.42 1.11 16 34 H 0.10 0.68 8.01 -51.93 -0.42 0.27 16 35 H 0.09 0.77 8.08 -51.93 -0.42 0.35 16 36 H 0.12 1.48 8.06 -52.49 -0.42 1.06 16 37 H 0.13 1.93 8.06 -52.49 -0.42 1.51 16 38 H 0.42 8.18 6.60 -40.82 -0.27 7.91 16 39 H 0.04 1.01 8.03 -51.92 -0.42 0.60 16 40 H 0.03 0.74 6.45 -51.93 -0.34 0.41 16 41 H 0.27 6.84 8.31 -40.82 -0.34 6.50 16 42 H 0.13 2.19 8.09 -51.93 -0.42 1.77 16 43 H 0.14 2.59 5.20 -52.20 -0.27 2.32 16 44 H 0.08 1.14 8.14 -51.93 -0.42 0.72 16 45 H 0.09 1.33 8.14 -51.93 -0.42 0.90 16 46 H 0.09 1.82 7.55 -51.93 -0.39 1.43 16 47 H 0.14 2.44 6.41 -52.49 -0.34 2.10 16 48 H 0.12 1.31 8.06 -52.49 -0.42 0.89 16 49 H 0.17 1.03 8.06 -52.49 -0.42 0.60 16 LS Contribution 409.23 15.07 6.17 6.17 Total: -1.00 -30.02 409.23 -10.92 -40.94 By element: Atomic # 1 Polarization: 20.92 SS G_CDS: -7.05 Total: 13.87 kcal Atomic # 6 Polarization: -1.67 SS G_CDS: -5.39 Total: -7.06 kcal Atomic # 7 Polarization: -57.05 SS G_CDS: 0.32 Total: -56.73 kcal Atomic # 8 Polarization: -12.56 SS G_CDS: 0.05 Total: -12.51 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.02 Total: 15.32 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -30.02 -10.92 -40.94 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096434831.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.731 kcal (2) G-P(sol) polarization free energy of solvation -30.024 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 130.707 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.916 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.940 kcal (6) G-S(sol) free energy of system = (1) + (5) 119.791 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds