Wall clock time and date at job start Tue Mar 31 2020 05:41:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 N 1.46507 * 109.47172 * 180.02562 * 17 16 14 19 19 C 1.34776 * 120.00038 * 180.02562 * 18 17 16 20 20 O 1.21558 * 119.99938 * 359.97438 * 19 18 17 21 21 C 1.47776 * 119.99782 * 179.97438 * 19 18 17 22 22 C 1.40648 * 119.74995 * 359.97438 * 21 19 18 23 23 C 1.35722 * 120.85083 * 179.97438 * 22 21 19 24 24 C 1.40701 * 120.01919 * 0.03848 * 23 22 21 25 25 C 1.40489 * 121.05258 * 180.02562 * 24 23 22 26 26 C 1.36138 * 119.72205 * 179.97438 * 25 24 23 27 27 C 1.39369 * 121.01097 * 359.97438 * 26 25 24 28 28 C 1.36081 * 120.95211 * 0.02562 * 27 26 25 29 29 C 1.40653 * 119.66757 * 359.95391 * 28 27 26 30 30 C 1.38488 * 119.74709 * 179.72108 * 21 19 18 31 31 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 33 33 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 34 34 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 35 35 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 36 36 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 37 37 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 38 38 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 39 39 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 40 40 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 41 41 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 42 42 H 0.97000 * 119.99454 * 359.97438 * 18 17 16 43 43 H 1.08001 * 119.57708 * 359.97230 * 22 21 19 44 44 H 1.08000 * 119.99047 * 180.02562 * 23 22 21 45 45 H 1.07996 * 120.13588 * 359.96871 * 25 24 23 46 46 H 1.08000 * 119.49365 * 180.02562 * 26 25 24 47 47 H 1.08005 * 119.52087 * 179.97438 * 27 26 25 48 48 H 1.08003 * 120.16468 * 179.97438 * 28 27 26 49 49 H 1.08003 * 120.27550 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 7 4.6346 -0.4748 -5.3424 19 6 5.4101 0.1800 -6.2291 20 8 5.7040 1.3437 -6.0364 21 6 5.9031 -0.5167 -7.4355 22 6 5.5602 -1.8633 -7.6528 23 6 6.0002 -2.5246 -8.7533 24 6 6.8109 -1.8638 -9.6944 25 6 7.2779 -2.5272 -10.8414 26 6 8.0604 -1.8615 -11.7346 27 6 8.4074 -0.5272 -11.5305 28 6 7.9741 0.1485 -10.4316 29 6 7.1634 -0.5060 -9.4867 30 6 6.6949 0.1629 -8.3461 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5139 -0.8900 34 1 0.7089 1.1611 3.4845 35 1 0.7376 -2.1442 -1.9996 36 1 2.4629 -2.5817 -1.9866 37 1 1.5295 -2.5968 -0.4711 38 1 3.9016 -1.6021 -3.0168 39 1 2.4483 -1.0887 -3.9070 40 1 3.5409 1.0721 -4.4431 41 1 4.9938 0.5582 -3.5525 42 1 4.4003 -1.4035 -5.4959 43 1 4.9388 -2.3778 -6.9348 44 1 5.7281 -3.5585 -8.9066 45 1 7.0174 -3.5610 -11.0137 46 1 8.4171 -2.3749 -12.6153 47 1 9.0299 -0.0224 -12.2546 48 1 8.2511 1.1822 -10.2859 49 1 6.9529 1.1980 -8.1774 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096445271.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:51 Heat of formation + Delta-G solvation = -29.647276 kcal Electronic energy + Delta-G solvation = -29392.772581 eV Core-core repulsion = 25284.462926 eV Total energy + Delta-G solvation = -4108.309655 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.93710 -39.69000 -39.04089 -36.58507 -35.63875 -35.02795 -33.13885 -32.92320 -31.60483 -30.39544 -29.64978 -29.02326 -26.15918 -25.30127 -25.11054 -23.62497 -23.29257 -22.29921 -21.05298 -20.83831 -18.68396 -17.97369 -17.69601 -17.11871 -16.66285 -16.30813 -15.97629 -15.83469 -15.31849 -15.17157 -14.94239 -14.82964 -14.31091 -14.17561 -13.98431 -13.85077 -13.63524 -13.53994 -13.44271 -12.79716 -12.50949 -12.36527 -12.32746 -11.99968 -11.70304 -11.68281 -11.56665 -11.41555 -11.34330 -11.26661 -11.07286 -10.83040 -10.70376 -10.41579 -10.28327 -10.18942 -10.12764 -9.23140 -9.20932 -9.01517 -8.99163 -8.44396 -8.33919 -7.62940 -6.08828 -4.17102 -0.01625 0.40977 1.56276 2.19013 2.92220 3.08416 3.24789 3.30382 3.33161 3.36337 3.73929 3.96317 4.13924 4.33099 4.36065 4.38844 4.50976 4.63815 4.77210 4.81417 4.86442 4.88768 4.98558 5.13972 5.16135 5.22768 5.36047 5.46055 5.47107 5.60542 5.68932 5.72860 5.75028 5.91248 5.93824 6.01650 6.05364 6.06774 6.12938 6.29173 6.32059 6.37107 6.50653 6.73603 6.81332 7.04479 7.32634 7.39009 7.51792 7.69697 7.99554 8.06385 8.18031 8.49042 8.80603 9.00912 9.49362 10.96495 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.026229 B = 0.001541 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.249314 B =18162.208746 C =18422.819359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.256 3.744 3 H 0.064 0.936 4 C -0.527 4.527 5 H 0.059 0.941 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.280 1.280 10 H -0.275 1.275 11 H -0.285 1.285 12 N -0.592 5.592 13 C 0.083 3.917 14 C 0.506 3.494 15 O -0.549 6.549 16 C -0.152 4.152 17 C 0.134 3.866 18 N -0.725 5.725 19 C 0.555 3.445 20 O -0.532 6.532 21 C -0.132 4.132 22 C -0.090 4.090 23 C -0.111 4.111 24 C -0.035 4.035 25 C -0.112 4.112 26 C -0.107 4.107 27 C -0.122 4.122 28 C -0.094 4.094 29 C -0.063 4.063 30 C -0.034 4.034 31 H 0.029 0.971 32 H 0.093 0.907 33 H 0.011 0.989 34 H 0.264 0.736 35 H 0.043 0.957 36 H 0.053 0.947 37 H 0.081 0.919 38 H 0.094 0.906 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.080 0.920 42 H 0.398 0.602 43 H 0.128 0.872 44 H 0.133 0.867 45 H 0.129 0.871 46 H 0.124 0.876 47 H 0.125 0.875 48 H 0.131 0.869 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.226 -10.760 -28.292 31.949 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C 0.156 3.844 3 H 0.082 0.918 4 C -0.566 4.566 5 H 0.077 0.923 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.206 1.206 10 H -0.200 1.200 11 H -0.211 1.211 12 N -0.323 5.323 13 C -0.061 4.061 14 C 0.292 3.708 15 O -0.428 6.428 16 C -0.193 4.193 17 C 0.011 3.989 18 N -0.377 5.377 19 C 0.342 3.658 20 O -0.409 6.409 21 C -0.135 4.135 22 C -0.108 4.108 23 C -0.129 4.129 24 C -0.036 4.036 25 C -0.130 4.130 26 C -0.126 4.126 27 C -0.140 4.140 28 C -0.112 4.112 29 C -0.063 4.063 30 C -0.053 4.053 31 H 0.048 0.952 32 H 0.112 0.888 33 H 0.030 0.970 34 H 0.074 0.926 35 H 0.061 0.939 36 H 0.072 0.928 37 H 0.100 0.900 38 H 0.112 0.888 39 H 0.111 0.889 40 H 0.097 0.903 41 H 0.098 0.902 42 H 0.233 0.767 43 H 0.146 0.854 44 H 0.151 0.849 45 H 0.147 0.853 46 H 0.142 0.858 47 H 0.143 0.857 48 H 0.149 0.851 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.466 -9.176 -27.834 31.120 hybrid contribution 0.060 -1.206 0.848 1.475 sum 10.525 -10.382 -26.986 30.770 Atomic orbital electron populations 1.22078 0.98159 0.99350 1.00815 1.18959 0.90899 0.94612 0.79887 0.91818 1.21306 1.31922 1.13036 0.90307 0.92259 1.24902 0.94948 0.94961 0.98990 1.69881 1.36291 1.22497 1.23792 0.86487 0.79144 0.79288 0.82413 1.20627 1.19956 1.21079 1.48237 1.48913 1.11630 1.23546 1.21611 0.98716 0.83327 1.02455 1.20057 0.79521 0.87119 0.84085 1.90694 1.58254 1.17052 1.76776 1.21847 1.00993 0.99919 0.96552 1.21122 0.98700 0.94686 0.84365 1.45947 1.52252 1.15738 1.23764 1.18210 0.78515 0.86336 0.82743 1.90813 1.57458 1.16345 1.76324 1.19905 1.02302 0.94763 0.96528 1.20899 0.98976 0.93244 0.97728 1.20921 0.97930 1.00076 0.93958 1.18227 0.97077 0.93065 0.95199 1.21067 0.98267 0.99993 0.93701 1.20947 0.97586 0.94767 0.99254 1.20896 1.00360 0.94807 0.97913 1.21146 0.96434 1.00047 0.93609 1.18071 0.99160 0.93466 0.95620 1.21536 0.92769 1.00067 0.90953 0.95198 0.88849 0.97028 0.92649 0.93857 0.92844 0.90046 0.88756 0.88912 0.90287 0.90202 0.76716 0.85447 0.84910 0.85313 0.85781 0.85697 0.85101 0.83892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.97 37.16 0.33 -3.12 16 2 C 0.26 6.48 2.64 -69.09 -0.18 6.30 16 3 H 0.06 1.88 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -14.07 7.99 -34.44 -0.28 -14.34 16 5 H 0.06 1.55 7.33 -52.49 -0.38 1.16 16 6 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.02 11.32 55.43 0.63 -24.40 16 8 Si 0.90 20.89 29.54 -169.99 -5.02 15.87 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 10 H -0.27 -6.35 7.11 56.52 0.40 -5.94 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.25 16 12 N -0.59 -12.15 2.75 -175.26 -0.48 -12.63 16 13 C 0.08 1.29 9.24 59.85 0.55 1.84 16 14 C 0.51 10.00 7.67 -10.99 -0.08 9.92 16 15 O -0.55 -13.36 15.31 5.56 0.09 -13.27 16 16 C -0.15 -2.00 4.37 -27.89 -0.12 -2.12 16 17 C 0.13 1.90 4.96 -4.04 -0.02 1.88 16 18 N -0.72 -8.04 5.50 -61.27 -0.34 -8.38 16 19 C 0.56 7.27 7.76 -12.36 -0.10 7.18 16 20 O -0.53 -9.17 16.30 5.31 0.09 -9.08 16 21 C -0.13 -1.38 5.87 -105.00 -0.62 -1.99 16 22 C -0.09 -0.69 9.44 -39.57 -0.37 -1.07 16 23 C -0.11 -0.78 9.73 -39.55 -0.38 -1.16 16 24 C -0.04 -0.29 5.75 -106.75 -0.61 -0.90 16 25 C -0.11 -0.72 9.76 -39.49 -0.39 -1.10 16 26 C -0.11 -0.62 9.95 -39.92 -0.40 -1.02 16 27 C -0.12 -0.75 9.95 -39.94 -0.40 -1.14 16 28 C -0.09 -0.70 9.77 -39.45 -0.39 -1.08 16 29 C -0.06 -0.57 5.74 -106.85 -0.61 -1.18 16 30 C -0.03 -0.35 9.34 -38.72 -0.36 -0.71 16 31 H 0.03 0.65 7.67 -51.93 -0.40 0.25 16 32 H 0.09 2.44 6.07 -51.93 -0.32 2.13 16 33 H 0.01 0.24 8.14 -51.93 -0.42 -0.18 16 34 H 0.26 7.08 8.31 -40.82 -0.34 6.74 16 35 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.05 0.64 6.44 -51.92 -0.33 0.30 16 37 H 0.08 1.37 7.02 -51.93 -0.36 1.01 16 38 H 0.09 1.03 7.40 -51.93 -0.38 0.64 16 39 H 0.09 0.97 8.11 -51.93 -0.42 0.55 16 40 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 41 H 0.08 1.32 8.10 -51.93 -0.42 0.89 16 42 H 0.40 2.97 6.46 -40.82 -0.26 2.71 16 43 H 0.13 0.65 6.34 -52.49 -0.33 0.31 16 44 H 0.13 0.58 8.06 -52.49 -0.42 0.16 16 45 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 46 H 0.12 0.43 8.06 -52.49 -0.42 0.01 16 47 H 0.13 0.49 8.06 -52.48 -0.42 0.07 16 48 H 0.13 0.75 8.06 -52.48 -0.42 0.33 16 49 H 0.14 1.46 7.61 -52.48 -0.40 1.06 16 LS Contribution 404.66 15.07 6.10 6.10 Total: -1.00 -34.99 404.66 -10.35 -45.34 By element: Atomic # 1 Polarization: 9.52 SS G_CDS: -6.89 Total: 2.63 kcal Atomic # 6 Polarization: 2.34 SS G_CDS: -4.52 Total: -2.18 kcal Atomic # 7 Polarization: -45.22 SS G_CDS: -0.19 Total: -45.41 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: 0.17 Total: -22.35 kcal Atomic # 14 Polarization: 20.89 SS G_CDS: -5.02 Total: 15.87 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -34.99 -10.35 -45.34 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096445271.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 15.694 kcal (2) G-P(sol) polarization free energy of solvation -34.990 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -19.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.351 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.341 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.647 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds