Wall clock time and date at job start Tue Mar 31 2020 05:41:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.46949 * 2 1 4 4 C 1.50694 * 109.47174 * 120.00530 * 2 1 3 5 5 H 1.08000 * 120.00563 * 119.99919 * 4 2 1 6 6 C 1.37885 * 119.99902 * 300.00082 * 4 2 1 7 7 N 1.31516 * 119.99913 * 359.97438 * 6 4 2 8 8 Si 1.86798 * 119.99766 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.47353 * 269.99586 * 8 6 4 10 10 H 1.48501 * 109.47293 * 30.00037 * 8 6 4 11 11 H 1.48504 * 109.46680 * 149.99835 * 8 6 4 12 12 N 1.46497 * 109.47145 * 240.00568 * 2 1 3 13 13 C 1.46503 * 119.99817 * 300.00252 * 12 2 1 14 14 C 1.34777 * 120.00371 * 119.99612 * 12 2 1 15 15 O 1.21281 * 119.99816 * 0.02562 * 14 12 2 16 16 C 1.50699 * 120.00362 * 179.97438 * 14 12 2 17 17 C 1.52992 * 109.47132 * 180.02562 * 16 14 12 18 18 N 1.46507 * 109.47172 * 180.02562 * 17 16 14 19 19 C 1.34776 * 120.00038 * 180.02562 * 18 17 16 20 20 O 1.21558 * 119.99938 * 359.97438 * 19 18 17 21 21 C 1.47776 * 119.99782 * 179.97438 * 19 18 17 22 22 C 1.40648 * 119.74995 * 359.97438 * 21 19 18 23 23 C 1.35722 * 120.85083 * 179.97438 * 22 21 19 24 24 C 1.40701 * 120.01919 * 0.03848 * 23 22 21 25 25 C 1.40489 * 121.05258 * 180.02562 * 24 23 22 26 26 C 1.36138 * 119.72205 * 179.97438 * 25 24 23 27 27 C 1.39369 * 121.01097 * 359.97438 * 26 25 24 28 28 C 1.36081 * 120.95211 * 0.02562 * 27 26 25 29 29 C 1.40653 * 119.66757 * 359.95391 * 28 27 26 30 30 C 1.38488 * 119.74709 * 179.72108 * 21 19 18 31 31 H 1.09000 * 109.47156 * 179.97438 * 1 2 3 32 32 H 1.08997 * 109.47359 * 300.00009 * 1 2 3 33 33 H 1.09007 * 109.47356 * 59.99532 * 1 2 3 34 34 H 0.97001 * 119.99646 * 179.97438 * 7 6 4 35 35 H 1.08994 * 109.47665 * 90.00431 * 13 12 2 36 36 H 1.09008 * 109.46786 * 210.00039 * 13 12 2 37 37 H 1.08997 * 109.47360 * 329.99480 * 13 12 2 38 38 H 1.09000 * 109.47496 * 300.00831 * 16 14 12 39 39 H 1.09000 * 109.46383 * 60.00794 * 16 14 12 40 40 H 1.08998 * 109.47625 * 300.00138 * 17 16 14 41 41 H 1.08996 * 109.47379 * 60.00532 * 17 16 14 42 42 H 0.97000 * 119.99454 * 359.97438 * 18 17 16 43 43 H 1.08001 * 119.57708 * 359.97230 * 22 21 19 44 44 H 1.08000 * 119.99047 * 180.02562 * 23 22 21 45 45 H 1.07996 * 120.13588 * 359.96871 * 25 24 23 46 46 H 1.08000 * 119.49365 * 180.02562 * 26 25 24 47 47 H 1.08005 * 119.52087 * 179.97438 * 27 26 25 48 48 H 1.08003 * 120.16468 * 179.97438 * 28 27 26 49 49 H 1.08003 * 120.27550 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 1.2303 5 1 2.6532 -1.5886 1.1313 6 6 1.6992 -0.2395 2.4827 7 7 0.9435 0.8301 2.6034 8 14 2.3213 -1.1207 4.0078 9 1 1.3427 -2.1620 4.4117 10 1 3.6293 -1.7586 3.7120 11 1 2.4865 -0.1417 5.1122 12 7 2.0183 -0.6905 -1.1962 13 6 1.6643 -2.0930 -1.4282 14 6 2.7931 -0.0354 -2.0834 15 8 3.0865 1.1256 -1.8912 16 6 3.2959 -0.7459 -3.3136 17 6 4.1462 0.2157 -4.1461 18 7 4.6346 -0.4748 -5.3424 19 6 5.4101 0.1800 -6.2291 20 8 5.7040 1.3437 -6.0364 21 6 5.9031 -0.5167 -7.4355 22 6 5.5602 -1.8633 -7.6528 23 6 6.0002 -2.5246 -8.7533 24 6 6.8109 -1.8638 -9.6944 25 6 7.2779 -2.5272 -10.8414 26 6 8.0604 -1.8615 -11.7346 27 6 8.4074 -0.5272 -11.5305 28 6 7.9741 0.1485 -10.4316 29 6 7.1634 -0.5060 -9.4867 30 6 6.6949 0.1629 -8.3461 31 1 -0.3633 -1.0277 -0.0005 32 1 -0.3634 0.5138 0.8899 33 1 -0.3634 0.5139 -0.8900 34 1 0.7089 1.1611 3.4845 35 1 0.7376 -2.1442 -1.9996 36 1 2.4629 -2.5817 -1.9866 37 1 1.5295 -2.5968 -0.4711 38 1 3.9016 -1.6021 -3.0168 39 1 2.4483 -1.0887 -3.9070 40 1 3.5409 1.0721 -4.4431 41 1 4.9938 0.5582 -3.5525 42 1 4.4003 -1.4035 -5.4959 43 1 4.9388 -2.3778 -6.9348 44 1 5.7281 -3.5585 -8.9066 45 1 7.0174 -3.5610 -11.0137 46 1 8.4171 -2.3749 -12.6153 47 1 9.0299 -0.0224 -12.2546 48 1 8.2511 1.1822 -10.2859 49 1 6.9529 1.1980 -8.1774 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000096445271.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:50 Heat of formation + Delta-G solvation = -51.745605 kcal Electronic energy + Delta-G solvation = -29393.730837 eV Core-core repulsion = 25284.462926 eV Total energy + Delta-G solvation = -4109.267910 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.63647 -40.87325 -40.30757 -37.29742 -37.14914 -36.32466 -34.80664 -33.69108 -32.71213 -31.52266 -30.50229 -30.16347 -27.52428 -27.30300 -26.15423 -24.35914 -24.13448 -22.87108 -22.53963 -21.94641 -19.98766 -19.05344 -18.52084 -18.25784 -18.09218 -17.43435 -17.13903 -17.06643 -16.74386 -16.10054 -16.06894 -15.89798 -15.61675 -15.00618 -14.96021 -14.64450 -14.49724 -14.38160 -14.26179 -14.20653 -14.04014 -13.76449 -13.53372 -13.19929 -12.96594 -12.91738 -12.72059 -12.64846 -12.61737 -12.45659 -12.23118 -12.18771 -12.17922 -12.12355 -11.78231 -11.22282 -11.16608 -10.98320 -10.68022 -10.47604 -10.28620 -9.62432 -9.30669 -8.88639 -8.14205 -6.30864 -0.63714 -0.14460 0.97416 1.41162 1.43412 1.51664 1.52851 1.80909 1.87209 2.31332 2.37728 2.59880 3.13956 3.14532 3.52483 3.63810 3.72103 3.85203 3.93012 4.01232 4.05244 4.12318 4.20798 4.33467 4.39724 4.42414 4.50590 4.61483 4.77840 4.78534 4.82558 4.85442 4.89664 4.91794 4.94250 5.08045 5.11071 5.12205 5.15506 5.24915 5.25772 5.33288 5.49188 5.57624 5.59594 5.61180 5.68424 5.81187 6.02407 6.05040 6.17365 6.44901 6.77865 6.85197 7.11943 7.33013 7.49632 8.90175 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.026229 B = 0.001541 C = 0.001519 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.249314 B =18162.208746 C =18422.819359 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.130 4.130 2 C 0.258 3.742 3 H 0.005 0.995 4 C -0.537 4.537 5 H 0.064 0.936 6 C 0.012 3.988 7 N -0.919 5.919 8 Si 0.966 3.034 9 H -0.266 1.266 10 H -0.270 1.270 11 H -0.289 1.289 12 N -0.599 5.599 13 C 0.076 3.924 14 C 0.493 3.507 15 O -0.610 6.610 16 C -0.129 4.129 17 C 0.143 3.857 18 N -0.703 5.703 19 C 0.551 3.449 20 O -0.587 6.587 21 C -0.145 4.145 22 C -0.095 4.095 23 C -0.102 4.102 24 C -0.051 4.051 25 C -0.115 4.115 26 C -0.110 4.110 27 C -0.120 4.120 28 C -0.117 4.117 29 C -0.081 4.081 30 C -0.052 4.052 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.019 0.981 34 H 0.264 0.736 35 H 0.068 0.932 36 H 0.099 0.901 37 H 0.066 0.934 38 H 0.132 0.868 39 H 0.136 0.864 40 H 0.051 0.949 41 H 0.048 0.952 42 H 0.420 0.580 43 H 0.158 0.842 44 H 0.168 0.832 45 H 0.157 0.843 46 H 0.152 0.848 47 H 0.146 0.854 48 H 0.135 0.865 49 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.518 -15.746 -30.639 36.018 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.156 3.844 3 H 0.023 0.977 4 C -0.575 4.575 5 H 0.082 0.918 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.791 3.209 9 H -0.191 1.191 10 H -0.195 1.195 11 H -0.215 1.215 12 N -0.329 5.329 13 C -0.066 4.066 14 C 0.282 3.718 15 O -0.493 6.493 16 C -0.169 4.169 17 C 0.019 3.981 18 N -0.357 5.357 19 C 0.340 3.660 20 O -0.468 6.468 21 C -0.148 4.148 22 C -0.113 4.113 23 C -0.119 4.119 24 C -0.051 4.051 25 C -0.133 4.133 26 C -0.128 4.128 27 C -0.137 4.137 28 C -0.135 4.135 29 C -0.081 4.081 30 C -0.072 4.072 31 H 0.068 0.932 32 H 0.083 0.917 33 H 0.038 0.962 34 H 0.073 0.927 35 H 0.087 0.913 36 H 0.118 0.882 37 H 0.085 0.915 38 H 0.150 0.850 39 H 0.154 0.846 40 H 0.070 0.930 41 H 0.067 0.933 42 H 0.260 0.740 43 H 0.176 0.824 44 H 0.186 0.814 45 H 0.175 0.825 46 H 0.170 0.830 47 H 0.164 0.836 48 H 0.152 0.848 49 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges 10.736 -14.261 -30.214 35.093 hybrid contribution 0.033 0.365 1.432 1.478 sum 10.770 -13.896 -28.782 33.727 Atomic orbital electron populations 1.21850 0.97113 1.00155 0.99778 1.18531 0.91667 0.92220 0.82014 0.97704 1.21598 1.31812 1.13072 0.91061 0.91751 1.25777 0.95146 0.95645 1.02172 1.70039 1.37461 1.23942 1.24361 0.85435 0.78883 0.78197 0.78359 1.19106 1.19453 1.21475 1.48234 1.48871 1.13657 1.22183 1.21937 1.01726 0.80109 1.02819 1.21200 0.78451 0.86697 0.85486 1.90672 1.60196 1.20089 1.78327 1.21746 1.02494 0.99363 0.93270 1.20775 0.97383 0.94814 0.85164 1.45636 1.51317 1.16514 1.22187 1.18746 0.77920 0.85810 0.83498 1.90783 1.59523 1.18878 1.77628 1.19794 1.03397 0.96204 0.95436 1.21136 0.99491 0.91799 0.98903 1.21325 0.96411 1.01387 0.92816 1.18589 0.97462 0.92716 0.96364 1.21425 0.97762 1.01248 0.92837 1.21351 0.96855 0.94556 0.99992 1.21243 0.99704 0.95297 0.97496 1.21330 0.97164 1.00686 0.94281 1.18237 0.99897 0.94455 0.95503 1.21540 0.93794 0.99712 0.92132 0.93223 0.91700 0.96236 0.92733 0.91347 0.88220 0.91515 0.84981 0.84627 0.93033 0.93344 0.74029 0.82444 0.81435 0.82524 0.83028 0.83574 0.84752 0.85647 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -6.27 8.97 71.98 0.65 -5.62 16 2 C 0.26 13.41 2.64 44.24 0.12 13.52 16 3 H 0.00 0.31 6.90 -2.39 -0.02 0.30 16 4 C -0.54 -28.96 7.99 25.60 0.20 -28.75 16 5 H 0.06 3.32 7.33 -2.91 -0.02 3.30 16 6 C 0.01 0.66 5.30 84.66 0.45 1.11 16 7 N -0.92 -53.52 11.32 21.45 0.24 -53.28 16 8 Si 0.97 42.98 29.54 68.60 2.03 45.01 16 9 H -0.27 -11.16 7.11 99.48 0.71 -10.45 16 10 H -0.27 -11.69 7.11 99.48 0.71 -10.99 16 11 H -0.29 -12.93 7.11 99.48 0.71 -12.22 16 12 N -0.60 -24.12 2.75 -826.80 -2.28 -26.40 16 13 C 0.08 2.08 9.24 127.77 1.18 3.26 16 14 C 0.49 19.43 7.67 87.66 0.67 20.10 16 15 O -0.61 -31.42 15.31 -3.03 -0.05 -31.47 16 16 C -0.13 -3.02 4.37 29.85 0.13 -2.89 16 17 C 0.14 4.07 4.96 86.38 0.43 4.50 16 18 N -0.70 -14.74 5.50 -466.05 -2.57 -17.31 16 19 C 0.55 14.87 7.76 86.77 0.67 15.55 16 20 O -0.59 -21.91 16.30 -3.90 -0.06 -21.97 16 21 C -0.15 -3.03 5.87 -20.11 -0.12 -3.15 16 22 C -0.10 -1.22 9.44 22.27 0.21 -1.01 16 23 C -0.10 -1.09 9.73 22.29 0.22 -0.87 16 24 C -0.05 -0.72 5.75 -21.25 -0.12 -0.85 16 25 C -0.12 -1.08 9.76 22.33 0.22 -0.87 16 26 C -0.11 -0.93 9.95 22.05 0.22 -0.71 16 27 C -0.12 -1.26 9.95 22.04 0.22 -1.04 16 28 C -0.12 -1.73 9.77 22.36 0.22 -1.51 16 29 C -0.08 -1.46 5.74 -21.31 -0.12 -1.58 16 30 C -0.05 -1.15 9.34 22.83 0.21 -0.93 16 31 H 0.05 2.13 7.67 -2.39 -0.02 2.11 16 32 H 0.06 3.50 6.07 -2.39 -0.01 3.49 16 33 H 0.02 0.85 8.14 -2.38 -0.02 0.83 16 34 H 0.26 14.57 8.31 -92.71 -0.77 13.80 16 35 H 0.07 1.56 8.14 -2.39 -0.02 1.54 16 36 H 0.10 1.80 6.44 -2.38 -0.02 1.79 16 37 H 0.07 2.06 7.02 -2.39 -0.02 2.04 16 38 H 0.13 2.20 7.40 -2.39 -0.02 2.18 16 39 H 0.14 2.13 8.11 -2.39 -0.02 2.11 16 40 H 0.05 1.75 8.10 -2.39 -0.02 1.73 16 41 H 0.05 1.69 8.10 -2.39 -0.02 1.67 16 42 H 0.42 4.76 6.46 -92.71 -0.60 4.16 16 43 H 0.16 0.90 6.34 -2.91 -0.02 0.88 16 44 H 0.17 0.58 8.06 -2.91 -0.02 0.56 16 45 H 0.16 0.54 8.06 -2.91 -0.02 0.52 16 46 H 0.15 0.42 8.06 -2.91 -0.02 0.40 16 47 H 0.15 0.82 8.06 -2.91 -0.02 0.80 16 48 H 0.13 1.70 8.06 -2.91 -0.02 1.68 16 49 H 0.13 3.00 7.61 -2.91 -0.02 2.98 16 Total: -1.00 -85.33 404.66 3.35 -81.99 By element: Atomic # 1 Polarization: 14.81 SS G_CDS: 0.38 Total: 15.18 kcal Atomic # 6 Polarization: 2.59 SS G_CDS: 5.65 Total: 8.25 kcal Atomic # 7 Polarization: -92.38 SS G_CDS: -4.60 Total: -96.98 kcal Atomic # 8 Polarization: -53.33 SS G_CDS: -0.11 Total: -53.44 kcal Atomic # 14 Polarization: 42.98 SS G_CDS: 2.03 Total: 45.01 kcal Total: -85.33 3.35 -81.99 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096445271.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 30.240 kcal (2) G-P(sol) polarization free energy of solvation -85.334 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.094 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.349 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.986 kcal (6) G-S(sol) free energy of system = (1) + (5) -51.746 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds