Wall clock time and date at job start Tue Mar 31 2020 05:41:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09000 * 109.47050 * 2 1 4 4 C 1.50699 * 109.46866 * 240.00048 * 2 1 3 5 5 H 1.08003 * 120.00271 * 240.00086 * 4 2 1 6 6 C 1.37879 * 120.00161 * 59.99586 * 4 2 1 7 7 N 1.31509 * 119.99895 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 120.00268 * 179.97438 * 6 4 2 9 9 H 1.48498 * 109.46680 * 60.00301 * 8 6 4 10 10 H 1.48492 * 109.47298 * 180.02562 * 8 6 4 11 11 H 1.48506 * 109.46944 * 300.00817 * 8 6 4 12 12 N 1.46500 * 109.47249 * 120.00351 * 2 1 3 13 13 C 1.46499 * 120.00401 * 59.99673 * 12 2 1 14 14 C 1.34779 * 119.99763 * 239.99831 * 12 2 1 15 15 O 1.21282 * 120.00170 * 0.02562 * 14 12 2 16 16 C 1.50701 * 120.00024 * 179.97438 * 14 12 2 17 17 C 1.52996 * 109.46917 * 179.97438 * 16 14 12 18 18 N 1.46505 * 109.46917 * 180.02562 * 17 16 14 19 19 C 1.34779 * 120.00024 * 180.02562 * 18 17 16 20 20 O 1.21564 * 119.99817 * 0.02562 * 19 18 17 21 21 C 1.47773 * 119.99876 * 180.02562 * 19 18 17 22 22 C 1.40652 * 119.75141 * 0.02562 * 21 19 18 23 23 C 1.35715 * 120.85266 * 179.97438 * 22 21 19 24 24 C 1.40709 * 120.02154 * 0.04313 * 23 22 21 25 25 C 1.40479 * 121.05330 * 180.02562 * 24 23 22 26 26 C 1.36139 * 119.72172 * 179.97438 * 25 24 23 27 27 C 1.39372 * 121.01326 * 359.97438 * 26 25 24 28 28 C 1.36089 * 120.94638 * 0.02562 * 27 26 25 29 29 C 1.40654 * 119.66431 * 359.95332 * 28 27 26 30 30 C 1.38488 * 119.74882 * 179.72440 * 21 19 18 31 31 H 1.09001 * 109.47002 * 299.99734 * 1 2 3 32 32 H 1.08993 * 109.46955 * 60.00171 * 1 2 3 33 33 H 1.09000 * 109.47050 * 179.97438 * 1 2 3 34 34 H 0.97006 * 120.00358 * 179.97438 * 7 6 4 35 35 H 1.08993 * 109.47066 * 89.99858 * 13 12 2 36 36 H 1.09004 * 109.47229 * 210.00249 * 13 12 2 37 37 H 1.09000 * 109.47083 * 330.00074 * 13 12 2 38 38 H 1.09004 * 109.47134 * 299.99971 * 16 14 12 39 39 H 1.09001 * 109.46597 * 60.00090 * 16 14 12 40 40 H 1.08993 * 109.47612 * 300.00333 * 17 16 14 41 41 H 1.09001 * 109.47336 * 60.00638 * 17 16 14 42 42 H 0.97002 * 120.00006 * 359.97438 * 18 17 16 43 43 H 1.08005 * 119.57150 * 359.97438 * 22 21 19 44 44 H 1.08003 * 119.99552 * 180.02562 * 23 22 21 45 45 H 1.07999 * 120.13954 * 359.96343 * 25 24 23 46 46 H 1.07997 * 119.49591 * 180.02562 * 26 25 24 47 47 H 1.07997 * 119.52607 * 179.97438 * 27 26 25 48 48 H 1.08004 * 120.16220 * 179.97438 * 28 27 26 49 49 H 1.08001 * 120.27345 * 0.02562 * 30 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5886 -1.1315 6 6 1.6992 -0.2394 -2.4828 7 7 0.9435 0.8301 -2.6034 8 14 2.3223 -1.1196 -4.0080 9 1 1.8278 -2.5198 -4.0082 10 1 1.8277 -0.4193 -5.2205 11 1 3.8074 -1.1190 -4.0078 12 7 2.0184 -0.6907 1.1961 13 6 1.6645 -2.0932 1.4280 14 6 2.7933 -0.0357 2.0833 15 8 3.0859 1.1256 1.8916 16 6 3.2953 -0.7459 3.3140 17 6 4.1459 0.2155 4.1464 18 7 4.6343 -0.4751 5.3425 19 6 5.4093 0.1798 6.2296 20 8 5.7026 1.3438 6.0374 21 6 5.9024 -0.5170 7.4358 22 6 5.5603 -1.8639 7.6527 23 6 6.0013 -2.5257 8.7524 24 6 6.8109 -1.8646 9.6944 25 6 7.2798 -2.5287 10.8400 26 6 8.0620 -1.8630 11.7335 27 6 8.4078 -0.5282 11.5303 28 6 7.9726 0.1482 10.4325 29 6 7.1629 -0.5067 9.4871 30 6 6.7031 0.1593 8.3410 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5138 -0.8899 33 1 -0.3633 -1.0277 -0.0005 34 1 0.7093 1.1618 -3.4844 35 1 2.4157 -2.7377 0.9716 36 1 1.6239 -2.2853 2.5002 37 1 0.6905 -2.3003 0.9847 38 1 2.4472 -1.0881 3.9073 39 1 3.9006 -1.6025 3.0176 40 1 4.9938 0.5574 3.5529 41 1 3.5409 1.0724 4.4428 42 1 4.3994 -1.4036 5.4964 43 1 4.9386 -2.3782 6.9346 44 1 5.7304 -3.5600 8.9049 45 1 7.0206 -3.5631 11.0114 46 1 8.4208 -2.3772 12.6128 47 1 9.0293 -0.0232 12.2549 48 1 8.2479 1.1825 10.2879 49 1 6.9673 1.1922 8.1686 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096445272.mol2 49 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:41:55 Heat of formation + Delta-G solvation = -28.818523 kcal Electronic energy + Delta-G solvation = -29392.450652 eV Core-core repulsion = 25284.176935 eV Total energy + Delta-G solvation = -4108.273717 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 354.173 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -40.93713 -39.69007 -39.04269 -36.58482 -35.64311 -35.02968 -33.13867 -32.92152 -31.60475 -30.39582 -29.64971 -29.01860 -26.19098 -25.30339 -25.09807 -23.62487 -23.29262 -22.29954 -21.05224 -20.82864 -18.67833 -17.97089 -17.69604 -17.11964 -16.66595 -16.29283 -15.97362 -15.84468 -15.31653 -15.16936 -14.93315 -14.84067 -14.31320 -14.19308 -13.98410 -13.85084 -13.63610 -13.54016 -13.43902 -12.79767 -12.62601 -12.36445 -12.32163 -11.96787 -11.70899 -11.67721 -11.58220 -11.42577 -11.29128 -11.25811 -11.06510 -10.82926 -10.71104 -10.41564 -10.27739 -10.17679 -10.12956 -9.23177 -9.20405 -9.01497 -8.99839 -8.43562 -8.33934 -7.62691 -6.07932 -4.16248 -0.01634 0.40986 1.56245 2.18987 2.92179 3.08397 3.26898 3.30376 3.32739 3.36005 3.73915 3.96136 4.13917 4.33113 4.36145 4.39429 4.50973 4.63792 4.77181 4.81384 4.86425 4.88738 4.98533 5.13102 5.15887 5.23529 5.36035 5.46037 5.46738 5.60527 5.68915 5.71417 5.74971 5.91240 5.94580 6.03962 6.05408 6.06814 6.12942 6.24796 6.29366 6.37097 6.50641 6.74423 6.79855 7.03548 7.32595 7.40010 7.50439 7.70044 7.99769 8.06368 8.18157 8.49401 8.81228 9.00895 9.50244 10.97317 Molecular weight = 354.17amu Principal moments of inertia in cm(-1) A = 0.026223 B = 0.001541 C = 0.001520 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1067.497952 B =18162.009006 C =18422.336914 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.257 3.743 3 H 0.064 0.936 4 C -0.527 4.527 5 H 0.058 0.942 6 C 0.065 3.935 7 N -0.887 5.887 8 Si 0.899 3.101 9 H -0.277 1.277 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.592 5.592 13 C 0.086 3.914 14 C 0.506 3.494 15 O -0.549 6.549 16 C -0.153 4.153 17 C 0.134 3.866 18 N -0.725 5.725 19 C 0.555 3.445 20 O -0.532 6.532 21 C -0.132 4.132 22 C -0.090 4.090 23 C -0.111 4.111 24 C -0.035 4.035 25 C -0.112 4.112 26 C -0.107 4.107 27 C -0.122 4.122 28 C -0.094 4.094 29 C -0.063 4.063 30 C -0.034 4.034 31 H 0.011 0.989 32 H 0.094 0.906 33 H 0.030 0.970 34 H 0.264 0.736 35 H 0.049 0.951 36 H 0.052 0.948 37 H 0.073 0.927 38 H 0.093 0.907 39 H 0.094 0.906 40 H 0.080 0.920 41 H 0.079 0.921 42 H 0.398 0.602 43 H 0.128 0.872 44 H 0.133 0.867 45 H 0.129 0.871 46 H 0.124 0.876 47 H 0.125 0.875 48 H 0.131 0.869 49 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.083 -10.699 28.405 31.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.157 3.843 3 H 0.082 0.918 4 C -0.565 4.565 5 H 0.076 0.924 6 C -0.138 4.138 7 N -0.525 5.525 8 Si 0.727 3.273 9 H -0.203 1.203 10 H -0.212 1.212 11 H -0.203 1.203 12 N -0.324 5.324 13 C -0.058 4.058 14 C 0.292 3.708 15 O -0.428 6.428 16 C -0.193 4.193 17 C 0.011 3.989 18 N -0.377 5.377 19 C 0.342 3.658 20 O -0.409 6.409 21 C -0.135 4.135 22 C -0.108 4.108 23 C -0.129 4.129 24 C -0.036 4.036 25 C -0.130 4.130 26 C -0.126 4.126 27 C -0.140 4.140 28 C -0.112 4.112 29 C -0.063 4.063 30 C -0.053 4.053 31 H 0.030 0.970 32 H 0.112 0.888 33 H 0.049 0.951 34 H 0.074 0.926 35 H 0.067 0.933 36 H 0.070 0.930 37 H 0.092 0.908 38 H 0.111 0.889 39 H 0.112 0.888 40 H 0.098 0.902 41 H 0.097 0.903 42 H 0.233 0.767 43 H 0.146 0.854 44 H 0.151 0.849 45 H 0.147 0.853 46 H 0.142 0.858 47 H 0.143 0.857 48 H 0.149 0.851 49 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 10.317 -9.116 27.945 31.152 hybrid contribution 0.095 -1.224 -0.872 1.506 sum 10.412 -10.340 27.073 30.794 Atomic orbital electron populations 1.22094 0.98215 0.99323 1.00897 1.18959 0.90870 0.94591 0.79908 0.91800 1.21268 1.31946 1.13013 0.90303 0.92372 1.24896 0.94943 0.94978 0.98973 1.69865 1.36267 1.22516 1.23894 0.86547 0.79245 0.79519 0.82007 1.20267 1.21157 1.20262 1.48236 1.48868 1.11662 1.23600 1.21566 1.01737 0.83237 0.99247 1.20052 0.79476 0.87099 0.84156 1.90694 1.58204 1.17013 1.76864 1.21850 1.00911 0.99964 0.96589 1.21122 0.98705 0.94681 0.84365 1.45947 1.52264 1.15744 1.23745 1.18212 0.78529 0.86342 0.82724 1.90814 1.57466 1.16325 1.76336 1.19905 1.02190 0.94793 0.96611 1.20899 0.99001 0.93215 0.97732 1.20922 0.97935 1.00078 0.93951 1.18224 0.97080 0.93044 0.95219 1.21065 0.98263 0.99985 0.93715 1.20947 0.97593 0.94767 0.99245 1.20897 1.00349 0.94801 0.97929 1.21148 0.96389 1.00048 0.93651 1.18070 0.99212 0.93491 0.95543 1.21539 0.92747 1.00067 0.90970 0.96953 0.88787 0.95123 0.92602 0.93260 0.92984 0.90813 0.88875 0.88787 0.90206 0.90281 0.76715 0.85447 0.84910 0.85312 0.85782 0.85697 0.85100 0.83892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.47 8.95 37.16 0.33 -3.13 16 2 C 0.26 6.49 2.64 -69.08 -0.18 6.31 16 3 H 0.06 1.89 6.90 -51.93 -0.36 1.53 16 4 C -0.53 -14.12 8.37 -34.44 -0.29 -14.41 16 5 H 0.06 1.53 7.65 -52.48 -0.40 1.13 16 6 C 0.06 1.76 5.30 -17.82 -0.09 1.66 16 7 N -0.89 -25.08 11.32 55.43 0.63 -24.45 16 8 Si 0.90 20.97 29.54 -169.99 -5.02 15.95 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.64 7.11 56.52 0.40 -6.23 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.59 -12.15 2.75 -175.26 -0.48 -12.64 16 13 C 0.09 1.34 9.48 59.85 0.57 1.90 16 14 C 0.51 9.99 7.67 -10.98 -0.08 9.91 16 15 O -0.55 -13.35 15.31 5.56 0.09 -13.26 16 16 C -0.15 -2.00 4.37 -27.88 -0.12 -2.12 16 17 C 0.13 1.90 4.96 -4.04 -0.02 1.88 16 18 N -0.72 -8.03 5.50 -61.27 -0.34 -8.37 16 19 C 0.55 7.27 7.77 -12.36 -0.10 7.17 16 20 O -0.53 -9.16 16.30 5.31 0.09 -9.08 16 21 C -0.13 -1.38 5.87 -105.00 -0.62 -1.99 16 22 C -0.09 -0.69 9.44 -39.57 -0.37 -1.07 16 23 C -0.11 -0.78 9.73 -39.55 -0.38 -1.16 16 24 C -0.04 -0.29 5.75 -106.76 -0.61 -0.90 16 25 C -0.11 -0.72 9.76 -39.49 -0.39 -1.10 16 26 C -0.11 -0.62 9.95 -39.91 -0.40 -1.02 16 27 C -0.12 -0.75 9.95 -39.93 -0.40 -1.14 16 28 C -0.09 -0.70 9.77 -39.44 -0.39 -1.08 16 29 C -0.06 -0.57 5.74 -106.85 -0.61 -1.18 16 30 C -0.03 -0.35 9.34 -38.72 -0.36 -0.71 16 31 H 0.01 0.26 8.14 -51.93 -0.42 -0.17 16 32 H 0.09 2.45 6.07 -51.93 -0.32 2.14 16 33 H 0.03 0.66 6.66 -51.93 -0.35 0.31 16 34 H 0.26 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.05 0.59 6.44 -51.93 -0.33 0.26 16 37 H 0.07 1.18 6.43 -51.93 -0.33 0.85 16 38 H 0.09 0.96 7.40 -51.93 -0.38 0.58 16 39 H 0.09 1.03 8.11 -51.93 -0.42 0.61 16 40 H 0.08 1.32 8.10 -51.93 -0.42 0.89 16 41 H 0.08 1.27 8.10 -51.93 -0.42 0.85 16 42 H 0.40 2.96 6.45 -40.82 -0.26 2.70 16 43 H 0.13 0.65 6.34 -52.48 -0.33 0.31 16 44 H 0.13 0.58 8.06 -52.48 -0.42 0.16 16 45 H 0.13 0.53 8.06 -52.49 -0.42 0.10 16 46 H 0.12 0.43 8.06 -52.49 -0.42 0.01 16 47 H 0.13 0.49 8.06 -52.49 -0.42 0.07 16 48 H 0.13 0.75 8.06 -52.48 -0.42 0.32 16 49 H 0.14 1.46 7.61 -52.49 -0.40 1.06 16 LS Contribution 403.98 15.07 6.09 6.09 Total: -1.00 -35.06 403.98 -10.29 -45.35 By element: Atomic # 1 Polarization: 9.41 SS G_CDS: -6.83 Total: 2.59 kcal Atomic # 6 Polarization: 2.32 SS G_CDS: -4.51 Total: -2.19 kcal Atomic # 7 Polarization: -45.26 SS G_CDS: -0.19 Total: -45.45 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: 0.17 Total: -22.34 kcal Atomic # 14 Polarization: 20.97 SS G_CDS: -5.02 Total: 15.95 kcal Total LS contribution 6.09 Total: 6.09 kcal Total: -35.06 -10.29 -45.35 kcal The number of atoms in the molecule is 49 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096445272.mol2 49 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 16.535 kcal (2) G-P(sol) polarization free energy of solvation -35.059 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.524 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.294 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.354 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.819 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds