Wall clock time and date at job start Tue Mar 31 2020 05:50:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34230 * 117.00438 * 2 1 4 4 O 1.20822 * 119.99591 * 359.97438 * 3 2 1 5 5 C 1.50700 * 120.00060 * 180.02562 * 3 2 1 6 6 N 1.46503 * 109.46966 * 179.97438 * 5 3 2 7 7 C 1.36873 * 120.00189 * 263.08751 * 6 5 3 8 8 H 1.08001 * 119.99953 * 206.81007 * 7 6 5 9 9 C 1.39044 * 120.00132 * 26.80544 * 7 6 5 10 10 N 1.31368 * 119.99588 * 7.65467 * 9 7 6 11 11 Si 1.86793 * 120.00308 * 187.65267 * 9 7 6 12 12 H 1.48504 * 109.47310 * 60.00056 * 11 9 7 13 13 H 1.48500 * 109.47416 * 179.97438 * 11 9 7 14 14 H 1.48500 * 109.47158 * 300.00030 * 11 9 7 15 15 C 1.34780 * 119.99837 * 83.08313 * 6 5 3 16 16 O 1.21591 * 120.00362 * 5.01304 * 15 6 5 17 17 C 1.47730 * 119.99742 * 185.01279 * 15 6 5 18 18 C 1.39664 * 120.14692 * 29.20864 * 17 15 6 19 19 C 1.37921 * 119.86721 * 180.23052 * 18 17 15 20 20 C 1.38382 * 120.16196 * 359.49235 * 19 18 17 21 21 C 1.50702 * 119.85534 * 180.23315 * 20 19 18 22 22 C 1.38449 * 120.29585 * 0.50982 * 20 19 18 23 23 Br 1.89097 * 119.93569 * 179.72309 * 22 20 19 24 24 C 1.38049 * 120.12512 * 359.74689 * 22 20 19 25 25 H 1.09002 * 109.47429 * 180.02562 * 1 2 3 26 26 H 1.09008 * 109.47215 * 300.00399 * 1 2 3 27 27 H 1.08995 * 109.47491 * 59.99900 * 1 2 3 28 28 H 1.09002 * 109.47235 * 60.00061 * 5 3 2 29 29 H 1.08998 * 109.47243 * 299.99490 * 5 3 2 30 30 H 0.97005 * 119.99260 * 179.97438 * 10 9 7 31 31 H 1.07995 * 120.06816 * 359.95718 * 18 17 15 32 32 H 1.07998 * 119.92151 * 179.72759 * 19 18 17 33 33 H 1.09003 * 109.46989 * 270.27386 * 21 20 19 34 34 H 1.08997 * 109.46882 * 30.27527 * 21 20 19 35 35 H 1.09000 * 109.47004 * 150.27334 * 21 20 19 36 36 H 1.08002 * 120.08174 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1959 0.0000 4 8 1.4034 2.2092 -0.0005 5 6 3.5663 1.2747 -0.0006 6 7 3.9818 2.6796 -0.0011 7 6 4.3122 3.2952 -1.1781 8 1 5.0012 4.1269 -1.1776 9 6 3.7610 2.8497 -2.3743 10 7 2.8122 1.9411 -2.3622 11 14 4.3694 3.5431 -3.9986 12 1 5.8200 3.2610 -4.1450 13 1 3.6268 2.9084 -5.1170 14 1 4.1455 5.0109 -4.0251 15 6 4.0385 3.3660 1.1575 16 8 3.8337 2.7966 2.2121 17 6 4.3495 4.8101 1.1460 18 6 3.9995 5.5942 0.0445 19 6 4.2969 6.9410 0.0378 20 6 4.9313 7.5183 1.1237 21 6 5.2483 8.9916 1.1112 22 6 5.2813 6.7474 2.2191 23 35 6.1550 7.5453 3.6942 24 6 4.9942 5.3972 2.2363 25 1 -0.3634 -1.0277 0.0005 26 1 -0.3634 0.5139 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 3.9557 0.7808 -0.8908 29 1 3.9564 0.7805 0.8892 30 1 2.4274 1.6306 -3.1968 31 1 3.5010 5.1460 -0.8022 32 1 4.0306 7.5472 -0.8154 33 1 6.2358 9.1471 0.6767 34 1 4.5024 9.5186 0.5164 35 1 5.2360 9.3745 2.1317 36 1 5.2672 4.7966 3.0914 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096446336.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:50:35 Heat of formation + Delta-G solvation = -75.845137 kcal Electronic energy + Delta-G solvation = -23804.759542 eV Core-core repulsion = 20108.201211 eV Total energy + Delta-G solvation = -3696.558331 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 355.025 amu Computer time = 0.59 seconds Orbital eigenvalues (eV) -39.83372 -39.06411 -37.77655 -35.49962 -34.74183 -32.78134 -31.77763 -31.66214 -29.18410 -28.67813 -27.04442 -26.06156 -24.84516 -22.16013 -21.67206 -20.32615 -19.38430 -17.87241 -16.64384 -16.36657 -15.62192 -15.32868 -15.23424 -15.04435 -14.66394 -14.34810 -13.87373 -13.79188 -13.38691 -13.04558 -12.81135 -12.53994 -12.42799 -12.11598 -11.88214 -11.73144 -11.43126 -11.34002 -11.24484 -10.94069 -10.82277 -10.60450 -10.59797 -10.38772 -9.95545 -9.84729 -9.57101 -9.11841 -8.81643 -8.46147 -8.15348 -8.00366 -6.64277 -4.21875 1.34693 1.62720 1.86596 3.00344 3.08578 3.09923 3.38371 3.64804 3.80981 3.95428 4.30333 4.52129 4.87714 5.06349 5.08463 5.45915 5.65941 5.67673 5.69903 5.75989 5.78671 5.91489 5.92032 5.97719 6.15071 6.18385 6.31982 6.37083 6.52131 6.62372 6.83305 6.98676 7.13797 7.27214 7.39892 7.51088 8.09377 8.80028 9.06300 9.19257 9.59913 10.42027 Molecular weight = 355.03amu Principal moments of inertia in cm(-1) A = 0.014347 B = 0.003774 C = 0.003194 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1951.224165 B = 7416.825428 C = 8763.311641 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.044 3.956 2 O -0.375 6.375 3 C 0.488 3.512 4 O -0.500 6.500 5 C 0.157 3.843 6 N -0.419 5.419 7 C -0.340 4.340 8 H 0.108 0.892 9 C 0.042 3.958 10 N -0.867 5.867 11 Si 0.928 3.072 12 H -0.270 1.270 13 H -0.281 1.281 14 H -0.269 1.269 15 C 0.510 3.490 16 O -0.595 6.595 17 C -0.093 4.093 18 C -0.052 4.052 19 C -0.137 4.137 20 C -0.054 4.054 21 C -0.122 4.122 22 C -0.109 4.109 23 Br -0.066 7.066 24 C -0.047 4.047 25 H 0.085 0.915 26 H 0.050 0.950 27 H 0.055 0.945 28 H 0.124 0.876 29 H 0.082 0.918 30 H 0.277 0.723 31 H 0.168 0.832 32 H 0.129 0.871 33 H 0.073 0.927 34 H 0.068 0.932 35 H 0.073 0.927 36 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.808 7.250 3.283 8.823 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.050 4.050 2 O -0.293 6.293 3 C 0.329 3.671 4 O -0.385 6.385 5 C 0.032 3.968 6 N -0.136 5.136 7 C -0.467 4.467 8 H 0.126 0.874 9 C -0.164 4.164 10 N -0.504 5.504 11 Si 0.753 3.247 12 H -0.195 1.195 13 H -0.207 1.207 14 H -0.194 1.194 15 C 0.301 3.699 16 O -0.481 6.481 17 C -0.097 4.097 18 C -0.071 4.071 19 C -0.156 4.156 20 C -0.057 4.057 21 C -0.178 4.178 22 C -0.188 4.188 23 Br 0.020 6.980 24 C -0.068 4.068 25 H 0.104 0.896 26 H 0.069 0.931 27 H 0.074 0.926 28 H 0.142 0.858 29 H 0.100 0.900 30 H 0.088 0.912 31 H 0.185 0.815 32 H 0.146 0.854 33 H 0.092 0.908 34 H 0.087 0.913 35 H 0.092 0.908 36 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges 3.672 7.428 4.175 9.279 hybrid contribution -0.332 0.127 -1.411 1.455 sum 3.341 7.555 2.765 8.711 Atomic orbital electron populations 1.22928 0.78650 1.01809 1.01636 1.86444 1.21696 1.35423 1.85739 1.23780 0.92145 0.80595 0.70581 1.90509 1.66464 1.36355 1.45157 1.20430 0.87386 0.85318 1.03662 1.43099 1.56333 1.07975 1.06197 1.19762 1.25811 1.18059 0.83115 0.87442 1.25364 0.94464 0.96542 1.00069 1.69612 1.23095 1.28964 1.28768 0.85962 0.78969 0.79406 0.80323 1.19520 1.20655 1.19375 1.18006 0.81992 0.85897 0.84048 1.90642 1.56277 1.70037 1.31187 1.19928 1.00512 0.94758 0.94507 1.22467 0.93878 0.92506 0.98230 1.21030 1.01356 0.95315 0.97850 1.19839 0.97171 0.95888 0.92770 1.20964 1.02120 0.91363 1.03373 1.21384 1.07623 0.95317 0.94448 1.96557 1.77878 1.82317 1.41294 1.21111 0.95270 0.92295 0.98144 0.89603 0.93149 0.92630 0.85820 0.89964 0.91242 0.81459 0.85358 0.90790 0.91258 0.90836 0.84756 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.76 10.56 101.05 1.07 1.82 16 2 O -0.38 -7.94 10.56 -39.26 -0.41 -8.35 16 3 C 0.49 11.79 6.00 36.01 0.22 12.00 16 4 O -0.50 -13.52 15.50 -18.75 -0.29 -13.81 16 5 C 0.16 3.66 5.16 -5.19 -0.03 3.63 16 6 N -0.42 -10.18 2.17 -117.21 -0.25 -10.43 16 7 C -0.34 -7.95 6.62 -15.00 -0.10 -8.05 16 8 H 0.11 2.39 5.73 -52.49 -0.30 2.09 16 9 C 0.04 0.96 5.13 -17.45 -0.09 0.87 16 10 N -0.87 -21.12 8.78 55.50 0.49 -20.63 16 11 Si 0.93 18.06 29.56 -169.99 -5.02 13.03 16 12 H -0.27 -5.20 7.11 56.52 0.40 -4.80 16 13 H -0.28 -5.57 7.11 56.52 0.40 -5.17 16 14 H -0.27 -5.13 7.11 56.52 0.40 -4.72 16 15 C 0.51 12.53 7.15 -12.38 -0.09 12.44 16 16 O -0.60 -15.82 16.36 5.29 0.09 -15.73 16 17 C -0.09 -1.99 5.47 -104.97 -0.57 -2.56 16 18 C -0.05 -1.02 7.64 -39.17 -0.30 -1.32 16 19 C -0.14 -2.21 9.68 -39.64 -0.38 -2.60 16 20 C -0.05 -0.83 5.89 -104.49 -0.62 -1.45 16 21 C -0.12 -1.42 9.54 36.01 0.34 -1.08 16 22 C -0.11 -1.80 6.21 -39.57 -0.25 -2.05 16 23 Br -0.07 -0.91 31.76 -68.01 -2.16 -3.07 16 24 C -0.05 -0.90 9.33 -39.14 -0.37 -1.27 16 25 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.05 0.85 8.14 -51.92 -0.42 0.43 16 27 H 0.05 0.98 8.13 -51.93 -0.42 0.56 16 28 H 0.12 2.81 6.63 -51.93 -0.34 2.47 16 29 H 0.08 1.80 7.57 -51.93 -0.39 1.41 16 30 H 0.28 6.51 8.31 -40.82 -0.34 6.17 16 31 H 0.17 3.56 5.54 -52.49 -0.29 3.27 16 32 H 0.13 1.73 8.06 -52.49 -0.42 1.31 16 33 H 0.07 0.79 8.14 -51.93 -0.42 0.36 16 34 H 0.07 0.70 8.08 -51.93 -0.42 0.28 16 35 H 0.07 0.83 6.62 -51.93 -0.34 0.49 16 36 H 0.13 2.56 7.91 -52.49 -0.42 2.15 16 LS Contribution 327.42 15.07 4.93 4.93 Total: -1.00 -29.12 327.42 -7.55 -36.67 By element: Atomic # 1 Polarization: 10.74 SS G_CDS: -3.76 Total: 6.98 kcal Atomic # 6 Polarization: 11.56 SS G_CDS: -1.16 Total: 10.40 kcal Atomic # 7 Polarization: -31.30 SS G_CDS: 0.23 Total: -31.06 kcal Atomic # 8 Polarization: -37.27 SS G_CDS: -0.62 Total: -37.89 kcal Atomic # 14 Polarization: 18.06 SS G_CDS: -5.02 Total: 13.03 kcal Atomic # 35 Polarization: -0.91 SS G_CDS: -2.16 Total: -3.07 kcal Total LS contribution 4.93 Total: 4.93 kcal Total: -29.12 -7.55 -36.67 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096446336.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -39.176 kcal (2) G-P(sol) polarization free energy of solvation -29.115 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.291 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.669 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.845 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.59 seconds