Wall clock time and date at job start Tue Mar 31 2020 05:15:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31511 * 1 3 3 Si 1.86794 * 120.00420 * 2 1 4 4 H 1.48503 * 109.47404 * 240.00679 * 3 2 1 5 5 H 1.48500 * 109.46976 * 0.02562 * 3 2 1 6 6 H 1.48502 * 109.47506 * 120.00215 * 3 2 1 7 7 C 1.37877 * 119.99807 * 180.02562 * 2 1 3 8 8 H 1.08000 * 120.00201 * 179.97438 * 7 2 1 9 9 C 1.50703 * 120.00047 * 359.97438 * 7 2 1 10 10 N 1.46500 * 109.46999 * 180.02562 * 9 7 2 11 11 C 1.46507 * 119.99685 * 262.69695 * 10 9 7 12 12 C 1.52998 * 109.47086 * 265.64509 * 11 10 9 13 13 F 1.39901 * 109.47510 * 59.99726 * 12 11 10 14 14 F 1.39896 * 109.47178 * 180.02562 * 12 11 10 15 15 F 1.39902 * 109.46725 * 299.99645 * 12 11 10 16 16 C 1.34766 * 120.00318 * 82.70319 * 10 9 7 17 17 O 1.21513 * 119.99973 * 183.05498 * 16 10 9 18 18 C 1.48179 * 120.00012 * 3.05077 * 16 10 9 19 19 C 1.39129 * 119.69329 * 173.11657 * 18 16 10 20 20 C 1.39288 * 118.97768 * 180.02562 * 19 18 16 21 21 N 1.39938 * 120.82611 * 179.97438 * 20 19 18 22 22 C 1.35820 * 126.10353 * 179.71628 * 21 20 19 23 23 C 1.35288 * 107.61763 * 179.84507 * 22 21 20 24 24 C 1.39944 * 107.96552 * 0.42087 * 23 22 21 25 25 N 1.30828 * 108.36769 * 359.74303 * 24 23 22 26 26 C 1.39288 * 118.35310 * 0.02562 * 20 19 18 27 27 C 1.38348 * 119.27302 * 0.02562 * 26 20 19 28 28 N 1.31590 * 120.97758 * 359.97438 * 27 26 20 29 29 H 0.97002 * 119.99284 * 359.97438 * 1 2 3 30 30 H 1.08997 * 109.47347 * 60.00021 * 9 7 2 31 31 H 1.09003 * 109.46889 * 300.00001 * 9 7 2 32 32 H 1.09001 * 109.46975 * 25.64214 * 11 10 9 33 33 H 1.08994 * 109.46914 * 145.64151 * 11 10 9 34 34 H 1.08001 * 120.51305 * 359.97438 * 19 18 16 35 35 H 1.08000 * 126.18851 * 0.02562 * 22 21 20 36 36 H 1.08001 * 126.01395 * 180.15949 * 23 22 21 37 37 H 1.08002 * 125.81423 * 179.71282 * 24 23 22 38 38 H 1.07994 * 120.36582 * 180.02562 * 26 20 19 39 39 H 1.08003 * 119.50654 * 180.25572 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 3.1029 1.6964 -1.2126 5 1 1.2843 2.7464 0.0006 6 1 3.1030 1.6963 1.2125 7 6 2.0045 -1.1941 -0.0005 8 1 3.0845 -1.1941 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0005 11 6 2.5563 -4.2742 -1.2591 12 6 1.6619 -5.4992 -1.4600 13 9 0.3228 -5.0966 -1.5047 14 9 1.9997 -6.1312 -2.6615 15 9 1.8457 -6.3902 -0.3972 16 6 2.7535 -4.0286 1.1571 17 8 3.5846 -4.9150 1.1506 18 6 2.3454 -3.4049 2.4378 19 6 2.8074 -3.9326 3.6394 20 6 2.4140 -3.3349 4.8344 21 7 2.8551 -3.8341 6.0651 22 6 2.5444 -3.3344 7.2892 23 6 3.1661 -4.1011 8.2143 24 6 3.8860 -5.0934 7.5394 25 7 3.7010 -4.9347 6.2540 26 6 1.5698 -2.2286 4.7743 27 6 1.1519 -1.7629 3.5404 28 7 1.5406 -2.3489 2.4281 29 1 -0.4849 0.8401 0.0004 30 1 0.6239 -2.5567 -0.8903 31 1 0.6246 -2.5571 0.8897 32 1 2.4130 -3.5800 -2.0871 33 1 3.5995 -4.5879 -1.2242 34 1 3.4602 -4.7929 3.6455 35 1 1.9127 -2.4813 7.4881 36 1 3.1188 -3.9680 9.2851 37 1 4.4917 -5.8593 8.0010 38 1 1.2450 -1.7398 5.6808 39 1 0.5006 -0.9028 3.4891 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096451941.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:15:48 Heat of formation + Delta-G solvation = -38.184986 kcal Electronic energy + Delta-G solvation = -31740.995727 eV Core-core repulsion = 26851.085671 eV Total energy + Delta-G solvation = -4889.910056 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 354.104 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -49.66756 -47.22620 -47.10589 -41.63357 -40.22901 -38.55900 -35.46839 -34.22986 -32.63770 -31.50510 -30.57128 -29.79384 -29.20257 -26.97449 -24.73189 -23.95176 -23.03938 -22.82885 -21.40572 -20.86530 -19.61432 -18.32488 -18.09581 -17.87205 -17.23511 -16.75233 -16.13288 -15.88017 -15.73713 -15.42274 -15.02754 -14.89965 -14.45714 -14.38661 -14.06378 -14.02974 -13.89161 -13.60633 -13.59872 -13.31703 -13.29903 -13.21208 -13.06241 -12.90964 -12.35799 -12.03312 -11.92263 -11.82732 -11.42519 -11.00858 -10.94546 -10.88408 -10.71967 -10.25999 -9.87871 -9.66221 -9.40525 -9.05780 -8.73935 -8.46955 -8.30003 -7.95877 -6.09711 -4.09389 0.68528 1.01884 2.14457 2.17784 2.60251 2.93400 3.21594 3.24482 3.29735 3.35237 3.42789 4.12933 4.27018 4.32035 4.38546 4.45003 4.51046 4.56594 4.74196 4.86349 4.93473 5.17899 5.19746 5.26832 5.40390 5.43628 5.53626 5.67404 5.69286 5.78979 5.96671 6.03821 6.43073 6.44630 6.57045 6.97551 7.35540 7.45101 7.58302 7.79547 7.98550 8.16700 8.19997 8.61110 8.89996 9.50107 10.98431 Molecular weight = 354.10amu Principal moments of inertia in cm(-1) A = 0.008301 B = 0.004385 C = 0.003094 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3372.378706 B = 6383.809827 C = 9047.411176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.887 5.887 2 C 0.072 3.928 3 Si 0.886 3.114 4 H -0.278 1.278 5 H -0.287 1.287 6 H -0.279 1.279 7 C -0.503 4.503 8 H 0.052 0.948 9 C 0.226 3.774 10 N -0.576 5.576 11 C 0.079 3.921 12 C 0.431 3.569 13 F -0.180 7.180 14 F -0.189 7.189 15 F -0.179 7.179 16 C 0.573 3.427 17 O -0.546 6.546 18 C 0.107 3.893 19 C -0.119 4.119 20 C 0.178 3.822 21 N -0.321 5.321 22 C 0.055 3.945 23 C -0.262 4.262 24 C 0.052 3.948 25 N -0.282 5.282 26 C -0.180 4.180 27 C 0.123 3.877 28 N -0.381 5.381 29 H 0.262 0.738 30 H 0.032 0.968 31 H 0.089 0.911 32 H 0.128 0.872 33 H 0.117 0.883 34 H 0.155 0.845 35 H 0.179 0.821 36 H 0.154 0.846 37 H 0.190 0.810 38 H 0.139 0.861 39 H 0.171 0.829 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.791 -5.413 10.430 11.886 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.526 5.526 2 C -0.131 4.131 3 Si 0.714 3.286 4 H -0.204 1.204 5 H -0.213 1.213 6 H -0.205 1.205 7 C -0.542 4.542 8 H 0.071 0.929 9 C 0.108 3.892 10 N -0.305 5.305 11 C -0.048 4.048 12 C 0.375 3.625 13 F -0.161 7.161 14 F -0.171 7.171 15 F -0.160 7.160 16 C 0.361 3.639 17 O -0.424 6.424 18 C -0.032 4.032 19 C -0.142 4.142 20 C 0.078 3.922 21 N -0.098 5.098 22 C -0.087 4.087 23 C -0.291 4.291 24 C -0.136 4.136 25 N -0.100 5.100 26 C -0.203 4.203 27 C -0.036 4.036 28 N -0.092 5.092 29 H 0.072 0.928 30 H 0.050 0.950 31 H 0.106 0.894 32 H 0.146 0.854 33 H 0.135 0.865 34 H 0.172 0.828 35 H 0.197 0.803 36 H 0.172 0.828 37 H 0.206 0.794 38 H 0.157 0.843 39 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges 1.991 -5.856 8.368 10.406 hybrid contribution 0.388 0.976 1.697 1.996 sum 2.380 -4.880 10.066 11.437 Atomic orbital electron populations 1.69918 1.05681 1.26763 1.50232 1.24727 0.94656 0.98343 0.95339 0.86765 0.79659 0.83521 0.78626 1.20398 1.21262 1.20526 1.21175 0.92801 0.90273 1.49977 0.92942 1.20347 0.87327 0.81117 1.00419 1.48182 1.44809 1.34225 1.03288 1.22503 0.99179 0.91705 0.91410 1.21521 0.80895 0.86562 0.73535 1.93199 1.36422 1.90426 1.96058 1.93142 1.92273 1.84354 1.47309 1.93207 1.95079 1.70939 1.56796 1.17845 0.81080 0.81636 0.83383 1.90739 1.33319 1.31461 1.86872 1.20968 0.95900 0.93594 0.92716 1.21719 1.00944 1.01761 0.89775 1.17556 0.96919 0.94821 0.82896 1.45950 1.36851 1.23133 1.03832 1.22804 1.01291 1.00556 0.84040 1.21599 1.06722 1.00200 1.00566 1.24110 0.99356 0.99465 0.90623 1.77543 1.10668 1.03032 1.18754 1.22078 1.00168 0.96744 1.01349 1.23023 0.96533 0.98275 0.85803 1.68836 1.06991 1.04775 1.28606 0.92829 0.95014 0.89366 0.85446 0.86544 0.82771 0.80348 0.82812 0.79358 0.84318 0.81201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -22.97 13.29 55.43 0.74 -22.23 16 2 C 0.07 1.79 5.46 -17.82 -0.10 1.69 16 3 Si 0.89 19.85 29.54 -169.99 -5.02 14.83 16 4 H -0.28 -6.29 7.11 56.52 0.40 -5.88 16 5 H -0.29 -6.40 7.11 56.52 0.40 -6.00 16 6 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 7 C -0.50 -12.38 7.94 -34.44 -0.27 -12.65 16 8 H 0.05 1.34 7.81 -52.49 -0.41 0.93 16 9 C 0.23 5.16 4.61 -5.19 -0.02 5.14 16 10 N -0.58 -11.83 2.40 -176.05 -0.42 -12.25 16 11 C 0.08 1.36 5.41 -4.04 -0.02 1.34 16 12 C 0.43 7.41 3.29 37.16 0.12 7.53 16 13 F -0.18 -3.30 16.94 2.25 0.04 -3.26 16 14 F -0.19 -2.97 17.32 2.25 0.04 -2.93 16 15 F -0.18 -3.37 15.87 2.25 0.04 -3.34 16 16 C 0.57 12.07 7.08 -12.18 -0.09 11.99 16 17 O -0.55 -11.96 15.11 5.35 0.08 -11.88 16 18 C 0.11 2.11 6.62 -83.05 -0.55 1.56 16 19 C -0.12 -2.13 9.26 -38.86 -0.36 -2.49 16 20 C 0.18 2.75 6.73 -83.38 -0.56 2.19 16 21 N -0.32 -4.55 3.81 -10.41 -0.04 -4.59 16 22 C 0.06 0.58 10.86 -16.84 -0.18 0.40 16 23 C -0.26 -2.47 10.80 -39.99 -0.43 -2.90 16 24 C 0.05 0.57 12.02 -17.34 -0.21 0.36 16 25 N -0.28 -4.15 11.97 30.64 0.37 -3.78 16 26 C -0.18 -2.41 9.54 -39.15 -0.37 -2.79 16 27 C 0.12 1.97 11.17 -17.61 -0.20 1.77 16 28 N -0.38 -7.53 4.97 -9.86 -0.05 -7.58 16 29 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 30 H 0.03 0.77 7.85 -51.93 -0.41 0.36 16 31 H 0.09 2.12 5.26 -52.17 -0.27 1.84 16 32 H 0.13 1.99 8.04 -51.93 -0.42 1.57 16 33 H 0.12 1.88 7.51 -51.93 -0.39 1.49 16 34 H 0.15 2.87 7.39 -52.49 -0.39 2.48 16 35 H 0.18 1.24 7.13 -52.49 -0.37 0.86 16 36 H 0.15 0.97 8.06 -52.49 -0.42 0.55 16 37 H 0.19 1.34 8.06 -52.49 -0.42 0.92 16 38 H 0.14 1.30 6.88 -52.49 -0.36 0.94 16 39 H 0.17 2.47 8.06 -52.48 -0.42 2.05 16 LS Contribution 353.67 15.07 5.33 5.33 Total: -1.00 -30.54 353.67 -5.58 -36.11 By element: Atomic # 1 Polarization: 5.85 SS G_CDS: -3.43 Total: 2.43 kcal Atomic # 6 Polarization: 16.38 SS G_CDS: -3.24 Total: 13.13 kcal Atomic # 7 Polarization: -51.02 SS G_CDS: 0.59 Total: -50.42 kcal Atomic # 8 Polarization: -11.96 SS G_CDS: 0.08 Total: -11.88 kcal Atomic # 9 Polarization: -9.64 SS G_CDS: 0.11 Total: -9.52 kcal Atomic # 14 Polarization: 19.85 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 5.33 Total: 5.33 kcal Total: -30.54 -5.58 -36.11 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096451941.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -2.070 kcal (2) G-P(sol) polarization free energy of solvation -30.538 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -32.609 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.576 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.115 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.185 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds