Wall clock time and date at job start Tue Mar 31 2020 06:13:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46496 * 119.99762 * 2 1 4 4 C 1.50695 * 109.47273 * 275.56508 * 3 2 1 5 5 H 1.08004 * 119.99805 * 4.72143 * 4 3 2 6 6 C 1.37876 * 120.00532 * 184.71752 * 4 3 2 7 7 N 1.31511 * 119.99798 * 0.02562 * 6 4 3 8 8 Si 1.86803 * 120.00149 * 179.97438 * 6 4 3 9 9 H 1.48500 * 109.46793 * 90.00424 * 8 6 4 10 10 H 1.48503 * 109.47155 * 209.99940 * 8 6 4 11 11 H 1.48491 * 109.47447 * 330.00401 * 8 6 4 12 12 S 1.65597 * 119.99839 * 179.97438 * 2 1 3 13 13 O 1.42100 * 106.40092 * 159.57727 * 12 2 1 14 14 O 1.42097 * 106.40253 * 26.65142 * 12 2 1 15 15 N 1.65600 * 107.21712 * 273.11332 * 12 2 1 16 16 C 1.46503 * 120.00315 * 62.77376 * 15 12 2 17 17 C 1.52997 * 109.47364 * 164.44270 * 16 15 12 18 18 C 1.50696 * 109.47282 * 180.02562 * 17 16 15 19 19 C 1.34199 * 126.50203 * 265.00254 * 18 17 16 20 20 N 1.36908 * 109.92788 * 179.97438 * 19 18 17 21 21 H 0.97000 * 125.07236 * 179.97438 * 20 19 18 22 22 C 1.37687 * 109.86077 * 0.02562 * 20 19 18 23 23 C 1.39126 * 133.46952 * 179.70820 * 22 20 19 24 24 C 1.37951 * 119.75665 * 179.87283 * 23 22 20 25 25 F 1.35101 * 119.69710 * 180.19902 * 24 23 22 26 26 C 1.39033 * 120.60988 * 0.45013 * 24 23 22 27 27 C 1.36604 * 120.50502 * 359.77702 * 26 24 23 28 28 C 1.39632 * 119.79747 * 359.97438 * 27 26 24 29 29 H 1.09002 * 109.47319 * 270.00565 * 1 2 3 30 30 H 1.09002 * 109.47083 * 29.99942 * 1 2 3 31 31 H 1.09004 * 109.47408 * 150.00024 * 1 2 3 32 32 H 1.09000 * 109.47663 * 35.56704 * 3 2 1 33 33 H 1.09004 * 109.47085 * 155.57237 * 3 2 1 34 34 H 0.96998 * 120.00118 * 179.97438 * 7 6 4 35 35 H 0.97002 * 120.00149 * 242.77862 * 15 12 2 36 36 H 1.08999 * 109.46401 * 44.44628 * 16 15 12 37 37 H 1.08998 * 109.47189 * 284.44927 * 16 15 12 38 38 H 1.08999 * 109.46810 * 60.00283 * 17 16 15 39 39 H 1.08998 * 109.47504 * 300.00464 * 17 16 15 40 40 H 1.08005 * 125.03748 * 359.97438 * 19 18 17 41 41 H 1.08000 * 120.12110 * 0.31385 * 23 22 20 42 42 H 1.07992 * 119.74621 * 179.74857 * 26 24 23 43 43 H 1.07994 * 120.10378 * 180.02562 * 27 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1974 1.2687 0.0000 4 6 2.3293 1.7727 -1.4141 5 1 1.8446 1.2455 -2.2226 6 6 3.0684 2.9067 -1.6758 7 7 3.6589 3.5484 -0.6913 8 14 3.2324 3.5309 -3.4288 9 1 2.1305 4.4828 -3.7203 10 1 4.5377 4.2208 -3.5885 11 1 3.1592 2.3856 -4.3710 12 16 2.2929 -1.4341 0.0006 13 8 3.5999 -1.1431 -0.4752 14 8 1.4385 -2.3910 -0.6104 15 7 2.4636 -1.9009 1.5803 16 6 1.2782 -2.1950 2.3895 17 6 1.6962 -2.9588 3.6475 18 6 0.4768 -3.2619 4.4795 19 6 0.0106 -2.5353 5.5069 20 7 -1.1166 -3.1201 6.0186 21 1 -1.6317 -2.7782 6.7661 22 6 -1.4094 -4.2667 5.3147 23 6 -2.4163 -5.2213 5.4163 24 6 -2.4426 -6.2848 4.5381 25 9 -3.4233 -7.2090 4.6353 26 6 -1.4663 -6.4173 3.5572 27 6 -0.4668 -5.4929 3.4444 28 6 -0.4248 -4.4061 4.3200 29 1 -0.3634 0.0001 1.0277 30 1 -0.3633 0.8900 -0.5138 31 1 -0.3634 -0.8900 -0.5138 32 1 1.6552 2.0014 0.5977 33 1 3.1894 1.1156 0.4250 34 1 4.1792 4.3461 -0.8755 35 1 3.3484 -1.9795 1.9700 36 1 0.5841 -2.8029 1.8092 37 1 0.7927 -1.2619 2.6753 38 1 2.3904 -2.3510 4.2277 39 1 2.1817 -3.8919 3.3617 40 1 0.4582 -1.6241 5.8755 41 1 -3.1787 -5.1262 6.1754 42 1 -1.4980 -7.2576 2.8796 43 1 0.2880 -5.6019 2.6797 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096453005.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:50 Heat of formation + Delta-G solvation = -66.979260 kcal Electronic energy + Delta-G solvation = -28726.746384 eV Core-core repulsion = 24427.542534 eV Total energy + Delta-G solvation = -4299.203850 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 355.115 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -49.11491 -41.60618 -37.04482 -36.61154 -35.96440 -35.44264 -35.10807 -32.82283 -32.41758 -30.45630 -29.38126 -27.75544 -27.55838 -25.04736 -23.47552 -23.16365 -22.25956 -22.18179 -19.89068 -18.87275 -18.31330 -17.44234 -17.18373 -16.67456 -16.49014 -16.39502 -15.91928 -15.79915 -15.53456 -14.99510 -14.76198 -14.54178 -14.25178 -14.20327 -13.86334 -13.46543 -13.33413 -13.24683 -12.95541 -12.39090 -12.28110 -12.22850 -12.12610 -11.66475 -11.57102 -11.50971 -11.43400 -11.21487 -11.13758 -11.12346 -11.04554 -10.67303 -10.48791 -10.02292 -9.88984 -9.74543 -9.26225 -8.53736 -8.43548 -8.05400 -7.96561 -6.05571 -4.09411 0.66803 1.15649 1.28542 2.29419 2.69094 3.32153 3.38627 3.43144 3.44618 3.58414 4.08226 4.18394 4.33827 4.43611 4.45975 4.70185 4.76018 4.91576 4.97357 5.05460 5.16935 5.17266 5.30040 5.34274 5.48258 5.54369 5.64916 5.70764 5.76071 5.84639 5.97289 6.03513 6.11034 6.16822 6.33821 6.35542 6.42383 6.58089 6.76364 7.12839 7.14394 7.29157 7.43982 7.65205 7.92353 8.22077 8.93199 9.55890 11.03088 Molecular weight = 355.12amu Principal moments of inertia in cm(-1) A = 0.020188 B = 0.002206 C = 0.002150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1386.635536 B =12688.584826 C =13019.576733 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.094 3.906 2 N -0.996 5.996 3 C 0.257 3.743 4 C -0.530 4.530 5 H 0.060 0.940 6 C 0.062 3.938 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.280 1.280 10 H -0.285 1.285 11 H -0.272 1.272 12 S 2.783 3.217 13 O -0.965 6.965 14 O -0.998 6.998 15 N -1.136 6.136 16 C 0.126 3.874 17 C -0.052 4.052 18 C -0.159 4.159 19 C 0.058 3.942 20 N -0.592 5.592 21 H 0.418 0.582 22 C 0.120 3.880 23 C -0.170 4.170 24 C 0.118 3.882 25 F -0.140 7.140 26 C -0.179 4.179 27 C -0.035 4.035 28 C -0.111 4.111 29 H 0.037 0.963 30 H 0.077 0.923 31 H 0.065 0.935 32 H 0.031 0.969 33 H 0.043 0.957 34 H 0.263 0.737 35 H 0.412 0.588 36 H 0.075 0.925 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.079 0.921 40 H 0.175 0.825 41 H 0.131 0.869 42 H 0.136 0.864 43 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.008 -15.373 17.431 25.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.053 4.053 2 N -0.838 5.838 3 C 0.135 3.865 4 C -0.569 4.569 5 H 0.078 0.922 6 C -0.140 4.140 7 N -0.535 5.535 8 Si 0.725 3.275 9 H -0.206 1.206 10 H -0.211 1.211 11 H -0.197 1.197 12 S 2.790 3.210 13 O -0.949 6.949 14 O -0.982 6.982 15 N -0.895 5.895 16 C -0.001 4.001 17 C -0.091 4.091 18 C -0.166 4.166 19 C -0.067 4.067 20 N -0.195 5.195 21 H 0.255 0.745 22 C 0.012 3.988 23 C -0.192 4.192 24 C 0.098 3.902 25 F -0.119 7.119 26 C -0.199 4.199 27 C -0.054 4.054 28 C -0.116 4.116 29 H 0.056 0.944 30 H 0.095 0.905 31 H 0.084 0.916 32 H 0.049 0.951 33 H 0.061 0.939 34 H 0.073 0.927 35 H 0.244 0.756 36 H 0.093 0.907 37 H 0.081 0.919 38 H 0.098 0.902 39 H 0.097 0.903 40 H 0.192 0.808 41 H 0.149 0.851 42 H 0.154 0.846 43 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges -9.853 -15.616 16.726 24.914 hybrid contribution -0.164 0.747 0.071 0.768 sum -10.017 -14.869 16.796 24.567 Atomic orbital electron populations 1.21369 0.80339 1.03485 1.00071 1.57584 1.14187 1.23311 1.88752 1.19055 0.91213 0.78675 0.97585 1.21506 1.31690 1.10244 0.93485 0.92160 1.24935 0.95037 0.96567 0.97484 1.69914 1.33258 1.18943 1.31337 0.86513 0.77431 0.78908 0.84695 1.20637 1.21056 1.19708 1.01910 0.73329 0.72911 0.72854 1.93641 1.38705 1.84593 1.77937 1.93522 1.69012 1.61119 1.74504 1.56268 1.13951 1.85895 1.33405 1.21194 0.87204 0.99458 0.92273 1.20107 0.93787 1.01001 0.94189 1.20103 0.99829 0.96339 1.00367 1.21738 0.88790 0.99278 0.96914 1.41724 1.25407 1.21262 1.31070 0.74498 1.17764 0.96893 0.89377 0.94747 1.19745 1.00836 0.95261 1.03348 1.17175 0.87787 0.87986 0.97239 1.91494 1.60401 1.64289 1.95696 1.20636 0.96181 1.02494 1.00564 1.20211 0.97072 0.91270 0.96846 1.19139 0.96930 0.97350 0.98153 0.94404 0.90468 0.91611 0.95084 0.93936 0.92708 0.75556 0.90676 0.91882 0.90223 0.90250 0.80759 0.85096 0.84621 0.84616 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 1.59 10.69 59.85 0.64 2.23 16 2 N -1.00 -20.33 3.23 -123.05 -0.40 -20.72 16 3 C 0.26 6.37 5.10 -5.20 -0.03 6.34 16 4 C -0.53 -14.85 9.38 -34.44 -0.32 -15.18 16 5 H 0.06 1.69 7.81 -52.48 -0.41 1.28 16 6 C 0.06 1.76 5.46 -17.82 -0.10 1.66 16 7 N -0.90 -26.08 13.29 55.43 0.74 -25.34 16 8 Si 0.90 21.86 29.54 -169.99 -5.02 16.84 16 9 H -0.28 -6.62 7.11 56.52 0.40 -6.22 16 10 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 11 H -0.27 -6.65 7.11 56.52 0.40 -6.24 16 12 S 2.78 54.17 6.09 -107.50 -0.65 53.52 16 13 O -0.96 -22.88 16.99 -57.17 -0.97 -23.85 16 14 O -1.00 -20.65 16.34 -57.17 -0.93 -21.58 16 15 N -1.14 -15.78 6.05 -10.61 -0.06 -15.84 16 16 C 0.13 1.44 6.24 -4.04 -0.03 1.42 16 17 C -0.05 -0.46 5.89 -27.89 -0.16 -0.62 16 18 C -0.16 -1.43 5.57 -102.70 -0.57 -2.00 16 19 C 0.06 0.41 11.73 -16.71 -0.20 0.22 16 20 N -0.59 -3.97 6.07 -10.64 -0.06 -4.03 16 21 H 0.42 1.53 8.96 -40.82 -0.37 1.17 16 22 C 0.12 1.10 7.27 -83.99 -0.61 0.49 16 23 C -0.17 -1.50 10.05 -39.36 -0.40 -1.90 16 24 C 0.12 1.16 7.28 -39.39 -0.29 0.87 16 25 F -0.14 -1.44 17.25 2.25 0.04 -1.40 16 26 C -0.18 -1.67 9.95 -39.88 -0.40 -2.06 16 27 C -0.04 -0.34 10.05 -39.65 -0.40 -0.74 16 28 C -0.11 -1.12 6.35 -105.12 -0.67 -1.78 16 29 H 0.04 0.52 8.05 -51.93 -0.42 0.10 16 30 H 0.08 1.33 8.07 -51.93 -0.42 0.91 16 31 H 0.07 1.06 7.05 -51.93 -0.37 0.70 16 32 H 0.03 0.77 8.11 -51.93 -0.42 0.35 16 33 H 0.04 1.13 7.50 -51.93 -0.39 0.74 16 34 H 0.26 7.24 8.31 -40.82 -0.34 6.90 16 35 H 0.41 4.88 8.66 -34.47 -0.30 4.58 16 36 H 0.07 0.93 7.79 -51.93 -0.40 0.52 16 37 H 0.06 0.70 8.05 -51.93 -0.42 0.28 16 38 H 0.08 0.59 8.14 -51.93 -0.42 0.16 16 39 H 0.08 0.67 8.14 -51.93 -0.42 0.25 16 40 H 0.18 0.75 8.06 -52.48 -0.42 0.33 16 41 H 0.13 0.89 8.06 -52.49 -0.42 0.47 16 42 H 0.14 1.04 8.06 -52.49 -0.42 0.61 16 43 H 0.14 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 384.07 15.07 5.79 5.79 Total: -1.00 -35.87 384.07 -10.65 -46.52 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: -5.58 Total: 1.17 kcal Atomic # 6 Polarization: -7.53 SS G_CDS: -3.52 Total: -11.06 kcal Atomic # 7 Polarization: -66.15 SS G_CDS: 0.21 Total: -65.94 kcal Atomic # 8 Polarization: -43.53 SS G_CDS: -1.91 Total: -45.44 kcal Atomic # 9 Polarization: -1.44 SS G_CDS: 0.04 Total: -1.40 kcal Atomic # 14 Polarization: 21.86 SS G_CDS: -5.02 Total: 16.84 kcal Atomic # 16 Polarization: 54.17 SS G_CDS: -0.65 Total: 53.52 kcal Total LS contribution 5.79 Total: 5.79 kcal Total: -35.87 -10.65 -46.52 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096453005.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -20.459 kcal (2) G-P(sol) polarization free energy of solvation -35.873 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -56.332 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.647 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.979 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds