Wall clock time and date at job start Tue Mar 31 2020 06:15:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50694 * 1 3 3 N 1.29877 * 124.85610 * 2 1 4 4 C 1.36122 * 108.81069 * 179.97438 * 3 2 1 5 5 C 1.39614 * 133.73324 * 180.02562 * 4 3 2 6 6 C 1.36588 * 119.93763 * 179.97438 * 5 4 3 7 7 C 1.39295 * 120.49571 * 0.02562 * 6 5 4 8 8 N 1.40016 * 119.84123 * 179.97438 * 7 6 5 9 9 C 1.34777 * 120.00073 * 146.66221 * 8 7 6 10 10 O 1.21588 * 119.99638 * 354.70076 * 9 8 7 11 11 N 1.34781 * 119.99921 * 174.70290 * 9 8 7 12 12 C 1.46495 * 120.00219 * 0.02562 * 11 9 8 13 13 C 1.50705 * 109.46950 * 270.00034 * 12 11 9 14 14 H 1.08002 * 119.99857 * 0.02562 * 13 12 11 15 15 C 1.37874 * 120.00088 * 179.97438 * 13 12 11 16 16 N 1.31518 * 120.00105 * 0.02562 * 15 13 12 17 17 Si 1.86800 * 120.00111 * 179.97438 * 15 13 12 18 18 H 1.48494 * 109.46962 * 0.02562 * 17 15 13 19 19 H 1.48499 * 109.47018 * 119.99924 * 17 15 13 20 20 H 1.48500 * 109.46858 * 240.00248 * 17 15 13 21 21 C 1.46496 * 119.99434 * 180.02562 * 11 9 8 22 22 C 1.50697 * 109.47265 * 89.99983 * 21 11 9 23 23 C 1.34520 * 125.78847 * 89.99699 * 22 21 11 24 24 C 1.41380 * 106.83689 * 179.97438 * 23 22 21 25 25 C 1.34512 * 106.84299 * 0.02562 * 24 23 22 26 26 O 1.34302 * 125.78887 * 269.68759 * 22 21 11 27 27 C 1.38538 * 120.31736 * 0.25813 * 7 6 5 28 28 C 1.38612 * 119.68042 * 359.44806 * 27 7 6 29 29 O 1.34289 * 124.85079 * 179.97438 * 2 1 3 30 30 H 1.09000 * 109.47291 * 270.02528 * 1 2 3 31 31 H 1.09000 * 109.47010 * 30.01863 * 1 2 3 32 32 H 1.08999 * 109.47401 * 150.02423 * 1 2 3 33 33 H 1.08005 * 120.02700 * 359.95577 * 5 4 3 34 34 H 1.08010 * 119.75022 * 180.02562 * 6 5 4 35 35 H 0.97005 * 119.99750 * 326.66070 * 8 7 6 36 36 H 1.08999 * 109.46804 * 29.99691 * 12 11 9 37 37 H 1.08998 * 109.47314 * 150.00400 * 12 11 9 38 38 H 0.96998 * 120.00108 * 180.02562 * 16 15 13 39 39 H 1.09004 * 109.46620 * 210.00085 * 21 11 9 40 40 H 1.09000 * 109.47565 * 329.99656 * 21 11 9 41 41 H 1.07991 * 126.57992 * 359.96801 * 23 22 21 42 42 H 1.08006 * 126.57760 * 179.97438 * 24 23 22 43 43 H 1.08004 * 125.78810 * 180.02562 * 25 24 23 44 44 H 1.07995 * 120.16001 * 179.70223 * 27 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 7 2.2492 1.0658 0.0000 4 6 3.5574 0.6895 0.0006 5 6 4.7638 1.3923 0.0013 6 6 5.9486 0.7126 0.0023 7 6 5.9645 -0.6803 0.0021 8 7 7.1869 -1.3631 0.0025 9 6 7.2994 -2.5431 0.6439 10 8 6.3697 -2.9683 1.3020 11 7 8.4425 -3.2518 0.5556 12 6 9.5628 -2.7391 -0.2369 13 6 9.4427 -3.2339 -1.6553 14 1 8.6144 -3.8666 -1.9382 15 6 10.3896 -2.8781 -2.5921 16 7 11.3981 -2.1072 -2.2478 17 14 10.2412 -3.4920 -4.3501 18 1 9.0269 -4.3371 -4.4783 19 1 10.1364 -2.3326 -5.2721 20 1 11.4419 -4.2939 -4.6974 21 6 8.5644 -4.5347 1.2523 22 6 8.1020 -5.6452 0.3446 23 6 8.8767 -6.3357 -0.5113 24 6 8.0390 -7.2748 -1.1555 25 6 6.8024 -7.1017 -0.6553 26 8 6.8477 -6.1173 0.2572 27 6 4.7766 -1.3932 -0.0046 28 6 3.5684 -0.7139 0.0006 29 8 2.2743 -1.1020 0.0005 30 1 -0.3634 0.0005 1.0276 31 1 -0.3633 0.8898 -0.5141 32 1 -0.3634 -0.8902 -0.5134 33 1 4.7601 2.4723 0.0008 34 1 6.8801 1.2593 0.0033 35 1 7.9528 -0.9867 -0.4587 36 1 9.5444 -1.6493 -0.2295 37 1 10.5016 -3.0896 0.1919 38 1 12.0641 -1.8565 -2.9069 39 1 9.6058 -4.7007 1.5281 40 1 7.9483 -4.5200 2.1514 41 1 9.9354 -6.1988 -0.6750 42 1 8.3350 -7.9929 -1.9061 43 1 5.9233 -7.6629 -0.9358 44 1 4.7920 -2.4730 -0.0096 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000096481379.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:50 Heat of formation + Delta-G solvation = 41.089010 kcal Electronic energy + Delta-G solvation = -31259.517918 eV Core-core repulsion = 26953.016614 eV Total energy + Delta-G solvation = -4306.501305 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.136 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -43.08997 -41.99852 -40.15457 -37.90287 -35.45237 -34.84115 -33.94414 -32.76351 -32.39983 -31.30159 -30.51954 -29.90355 -27.52109 -27.31864 -25.19743 -23.28300 -23.16973 -22.24943 -21.40520 -21.18336 -20.25397 -19.38514 -18.53278 -17.56545 -17.13800 -16.80292 -16.71360 -16.55952 -16.12739 -15.49246 -14.92111 -14.79577 -14.57012 -14.20224 -14.08246 -13.75828 -13.53860 -13.46871 -13.29800 -13.19046 -12.59595 -12.48900 -12.43165 -12.33398 -12.27821 -12.18141 -11.67854 -11.58123 -11.28827 -11.26355 -11.05387 -10.87401 -10.48070 -10.31907 -9.87819 -9.76633 -9.50599 -9.33216 -8.69270 -8.66929 -8.18732 -7.90180 -7.55821 -6.28498 -4.34820 0.83150 1.37512 2.15790 2.47634 2.52586 3.01474 3.16245 3.26018 3.31718 3.36350 3.44266 3.64194 3.83565 3.96727 4.25099 4.49801 4.68040 4.96160 5.02385 5.05681 5.13356 5.19371 5.21053 5.33281 5.41079 5.47402 5.54177 5.55002 5.74499 5.89634 5.97343 6.07890 6.22798 6.27031 6.30676 6.43355 6.48369 6.51806 6.56727 6.59559 6.90844 7.03226 7.05828 7.15546 7.50963 7.69000 7.70308 7.70723 7.91355 8.33836 8.75034 9.02004 9.34414 10.78143 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.009854 B = 0.003363 C = 0.002922 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2840.783956 B = 8323.348904 C = 9580.089234 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.060 4.060 2 C 0.227 3.773 3 N -0.476 5.476 4 C -0.010 4.010 5 C -0.041 4.041 6 C -0.143 4.143 7 C 0.215 3.785 8 N -0.675 5.675 9 C 0.709 3.291 10 O -0.591 6.591 11 N -0.605 5.605 12 C 0.237 3.763 13 C -0.532 4.532 14 H 0.065 0.935 15 C 0.067 3.933 16 N -0.892 5.892 17 Si 0.893 3.107 18 H -0.272 1.272 19 H -0.283 1.283 20 H -0.282 1.282 21 C 0.218 3.782 22 C -0.020 4.020 23 C -0.177 4.177 24 C -0.217 4.217 25 C -0.055 4.055 26 O -0.169 6.169 27 C -0.107 4.107 28 C 0.037 3.963 29 O -0.215 6.215 30 H 0.095 0.905 31 H 0.102 0.898 32 H 0.090 0.910 33 H 0.137 0.863 34 H 0.141 0.859 35 H 0.423 0.577 36 H 0.033 0.967 37 H 0.043 0.957 38 H 0.265 0.735 39 H 0.107 0.893 40 H 0.090 0.910 41 H 0.149 0.851 42 H 0.140 0.860 43 H 0.193 0.807 44 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.614 0.840 4.437 12.461 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C 0.015 3.985 3 N -0.207 5.207 4 C -0.122 4.122 5 C -0.061 4.061 6 C -0.165 4.165 7 C 0.117 3.883 8 N -0.324 5.324 9 C 0.411 3.589 10 O -0.471 6.471 11 N -0.338 5.338 12 C 0.117 3.883 13 C -0.571 4.571 14 H 0.083 0.917 15 C -0.136 4.136 16 N -0.530 5.530 17 Si 0.720 3.280 18 H -0.196 1.196 19 H -0.209 1.209 20 H -0.208 1.208 21 C 0.094 3.906 22 C -0.072 4.072 23 C -0.197 4.197 24 C -0.236 4.236 25 C -0.123 4.123 26 O -0.065 6.065 27 C -0.129 4.129 28 C -0.014 4.014 29 O -0.107 6.107 30 H 0.113 0.887 31 H 0.120 0.880 32 H 0.109 0.891 33 H 0.155 0.845 34 H 0.159 0.841 35 H 0.264 0.736 36 H 0.050 0.950 37 H 0.061 0.939 38 H 0.075 0.925 39 H 0.125 0.875 40 H 0.108 0.892 41 H 0.167 0.833 42 H 0.158 0.842 43 H 0.210 0.790 44 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -12.426 1.280 5.014 13.461 hybrid contribution 0.939 -1.060 -1.783 2.277 sum -11.487 0.219 3.231 11.935 Atomic orbital electron populations 1.20326 0.81290 1.05234 1.04844 1.26296 0.96468 0.78514 0.97178 1.70506 1.01112 1.29057 1.19980 1.19748 0.91998 0.91319 1.09086 1.19713 0.88092 0.99869 0.98399 1.20570 0.98756 0.92081 1.05068 1.17079 0.84778 0.90212 0.96256 1.42882 1.11928 1.21931 1.55694 1.15807 0.83355 0.80081 0.79624 1.90884 1.39066 1.70856 1.46263 1.47490 1.15054 1.19205 1.52050 1.19480 0.83784 0.94512 0.90490 1.21530 1.10247 1.31752 0.93551 0.91683 1.24899 0.94915 0.94772 0.99003 1.69915 1.12684 1.35504 1.34903 0.86503 0.78268 0.78826 0.84379 1.19621 1.20899 1.20832 1.19544 1.01345 0.77946 0.91802 1.22928 0.81609 0.99310 1.03312 1.21577 1.01422 0.98013 0.98705 1.21778 0.93655 1.03636 1.04580 1.23862 0.99698 0.93991 0.94795 1.84061 1.30930 1.41968 1.49491 1.19721 0.86166 1.01536 1.05496 1.19952 0.83462 0.93970 1.04036 1.84470 1.15426 1.36038 1.74749 0.88694 0.87982 0.89133 0.84494 0.84080 0.73638 0.94978 0.93887 0.92525 0.87522 0.89217 0.83344 0.84207 0.79036 0.83335 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.06 -0.44 10.51 36.00 0.38 -0.06 16 2 C 0.23 3.06 8.24 -13.11 -0.11 2.95 16 3 N -0.48 -7.37 11.34 -8.67 -0.10 -7.47 16 4 C -0.01 -0.16 7.24 -84.66 -0.61 -0.77 16 5 C -0.04 -0.58 10.04 -39.66 -0.40 -0.98 16 6 C -0.14 -2.04 9.88 -39.78 -0.39 -2.44 16 7 C 0.21 3.71 6.28 -83.62 -0.52 3.19 16 8 N -0.68 -12.35 5.22 -14.18 -0.07 -12.43 16 9 C 0.71 14.42 8.01 -86.91 -0.70 13.72 16 10 O -0.59 -13.12 13.62 5.29 0.07 -13.05 16 11 N -0.60 -11.88 2.44 -182.19 -0.44 -12.33 16 12 C 0.24 5.07 5.02 -5.19 -0.03 5.04 16 13 C -0.53 -12.85 9.14 -34.44 -0.31 -13.16 16 14 H 0.06 1.69 7.65 -52.49 -0.40 1.29 16 15 C 0.07 1.68 5.46 -17.82 -0.10 1.58 16 16 N -0.89 -23.01 13.29 55.43 0.74 -22.28 16 17 Si 0.89 20.17 29.54 -169.99 -5.02 15.15 16 18 H -0.27 -6.29 7.11 56.52 0.40 -5.88 16 19 H -0.28 -6.40 7.11 56.52 0.40 -6.00 16 20 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 21 C 0.22 3.82 5.98 -5.20 -0.03 3.79 16 22 C -0.02 -0.38 6.90 -35.62 -0.25 -0.62 16 23 C -0.18 -3.23 10.40 -39.70 -0.41 -3.64 16 24 C -0.22 -3.60 10.91 -39.70 -0.43 -4.03 16 25 C -0.06 -0.89 12.09 29.42 0.36 -0.53 16 26 O -0.17 -3.23 10.65 5.72 0.06 -3.17 16 27 C -0.11 -1.98 8.66 -39.33 -0.34 -2.32 16 28 C 0.04 0.64 7.43 -38.65 -0.29 0.36 16 29 O -0.22 -3.49 10.77 3.49 0.04 -3.45 16 30 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 31 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.09 0.52 8.14 -51.93 -0.42 0.09 16 33 H 0.14 1.56 8.06 -52.48 -0.42 1.14 16 34 H 0.14 1.64 8.06 -52.48 -0.42 1.21 16 35 H 0.42 7.49 6.51 -40.82 -0.27 7.23 16 36 H 0.03 0.70 6.29 -51.93 -0.33 0.37 16 37 H 0.04 0.95 7.89 -51.93 -0.41 0.54 16 38 H 0.27 6.59 8.31 -40.82 -0.34 6.25 16 39 H 0.11 1.60 7.89 -51.93 -0.41 1.19 16 40 H 0.09 1.53 7.42 -51.93 -0.39 1.14 16 41 H 0.15 2.68 8.06 -52.49 -0.42 2.26 16 42 H 0.14 1.97 8.06 -52.48 -0.42 1.55 16 43 H 0.19 2.28 8.06 -52.48 -0.42 1.85 16 44 H 0.15 3.04 6.42 -52.49 -0.34 2.70 16 LS Contribution 383.46 15.07 5.78 5.78 Total: -1.00 -31.70 383.46 -8.19 -39.89 By element: Atomic # 1 Polarization: 16.34 SS G_CDS: -5.05 Total: 11.28 kcal Atomic # 6 Polarization: 6.26 SS G_CDS: -4.19 Total: 2.07 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.12 Total: -54.50 kcal Atomic # 8 Polarization: -19.84 SS G_CDS: 0.17 Total: -19.67 kcal Atomic # 14 Polarization: 20.17 SS G_CDS: -5.02 Total: 15.15 kcal Total LS contribution 5.78 Total: 5.78 kcal Total: -31.70 -8.19 -39.89 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000096481379.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.980 kcal (2) G-P(sol) polarization free energy of solvation -31.697 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 49.282 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.193 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.891 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.089 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds