Wall clock time and date at job start Tue Mar 31 2020 05:03:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39672 * 120.16154 * 229.91087 * 3 2 1 5 5 C 1.37894 * 119.85670 * 180.27210 * 4 3 2 6 6 S 1.76203 * 119.90629 * 179.70866 * 5 4 3 7 7 O 1.42100 * 106.40133 * 156.19131 * 6 5 4 8 8 O 1.42101 * 106.39901 * 23.26818 * 6 5 4 9 9 N 1.65595 * 107.21744 * 269.72869 * 6 5 4 10 10 C 1.36941 * 120.00137 * 90.00263 * 9 6 5 11 11 H 1.08002 * 119.99796 * 227.71511 * 10 9 6 12 12 C 1.38807 * 119.99813 * 47.70906 * 10 9 6 13 13 N 1.31619 * 120.00465 * 24.74119 * 12 10 9 14 14 Si 1.86803 * 119.99765 * 204.73625 * 12 10 9 15 15 H 1.48503 * 109.47237 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47184 * 120.00059 * 14 12 10 17 17 H 1.48500 * 109.47475 * 240.00279 * 14 12 10 18 18 C 1.46497 * 120.00161 * 269.71985 * 9 6 5 19 19 C 1.54269 * 110.03669 * 241.59805 * 18 9 6 20 20 C 1.54958 * 104.15945 * 217.13620 * 19 18 9 21 21 C 1.54886 * 102.78203 * 37.88722 * 20 19 18 22 22 C 1.53873 * 110.03455 * 124.37981 * 18 9 6 23 23 C 1.38420 * 120.18831 * 359.44036 * 5 4 3 24 24 C 1.38278 * 120.32510 * 0.26441 * 23 5 4 25 25 C 1.38135 * 120.13969 * 0.03383 * 24 23 5 26 26 Cl 1.73601 * 120.09612 * 179.97438 * 25 24 23 27 27 H 1.08002 * 120.06962 * 0.02562 * 4 3 2 28 28 H 0.96996 * 119.99732 * 174.84874 * 13 12 10 29 29 H 1.09002 * 110.01475 * 2.99251 * 18 9 6 30 30 H 1.08997 * 110.48613 * 335.78569 * 19 18 9 31 31 H 1.09000 * 110.48062 * 98.42715 * 19 18 9 32 32 H 1.09005 * 110.72392 * 279.57098 * 20 19 18 33 33 H 1.09003 * 110.92365 * 156.29979 * 20 19 18 34 34 H 1.09002 * 110.49171 * 203.40280 * 21 20 19 35 35 H 1.09001 * 110.59799 * 80.81569 * 21 20 19 36 36 H 1.08992 * 110.03948 * 238.57506 * 22 18 9 37 37 H 1.09010 * 110.03061 * 359.95532 * 22 18 9 38 38 H 1.08005 * 119.83622 * 180.29606 * 23 5 4 39 39 H 1.08001 * 119.93530 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 0.7786 0.9239 5 6 4.6483 0.7789 0.9146 6 16 5.5345 1.7658 2.0745 7 8 6.8167 1.1690 2.2123 8 8 4.6562 1.9827 3.1704 9 7 5.7804 3.2453 1.3725 10 6 4.8571 4.2431 1.5368 11 1 4.5134 4.8069 0.6821 12 6 4.3628 4.5299 2.8018 13 7 5.0738 4.2333 3.8690 14 14 2.6887 5.3370 2.9896 15 1 2.0959 5.5656 1.6473 16 1 1.7972 4.4499 3.7792 17 1 2.8415 6.6367 3.6914 18 6 6.9887 3.4886 0.5807 19 6 7.8217 4.6181 1.2211 20 6 8.3935 5.4000 0.0116 21 6 7.2199 5.3742 -0.9988 22 6 6.6065 3.9688 -0.8303 23 6 5.3384 0.0018 0.0003 24 6 4.6517 -0.7761 -0.9138 25 6 3.2704 -0.7818 -0.9205 26 17 2.4095 -1.7583 -2.0690 27 1 2.7329 1.3818 1.6414 28 1 4.7632 4.5005 4.7482 29 1 7.5826 2.5769 0.5166 30 1 7.1864 5.2641 1.8270 31 1 8.6292 4.2019 1.8235 32 1 9.2669 4.8923 -0.3979 33 1 8.6399 6.4242 0.2915 34 1 7.5886 5.5102 -2.0155 35 1 6.4863 6.1424 -0.7542 36 1 7.0155 3.2907 -1.5792 37 1 5.5218 4.0201 -0.9263 38 1 6.4184 0.0026 0.0013 39 1 5.1965 -1.3797 -1.6246 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097002439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:47 Heat of formation + Delta-G solvation = -19.334895 kcal Electronic energy + Delta-G solvation = -27625.576732 eV Core-core repulsion = 23686.368088 eV Total energy + Delta-G solvation = -3939.208644 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 354.059 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -39.35695 -37.98117 -36.66613 -36.34568 -35.74546 -34.31920 -33.97765 -31.56059 -31.40256 -30.83592 -28.04977 -27.01348 -24.33447 -23.98703 -22.96937 -20.10711 -19.63477 -19.51178 -18.80634 -16.81173 -16.57162 -16.07628 -15.83112 -15.58004 -15.20396 -14.75460 -14.44744 -14.26402 -14.10501 -13.65980 -13.15467 -13.00327 -12.85664 -12.81424 -12.75196 -12.40269 -12.04869 -11.93292 -11.82596 -11.57856 -11.46167 -11.22556 -11.05467 -10.83825 -10.59576 -10.48311 -10.45693 -10.43171 -10.40556 -10.13699 -9.98913 -9.85225 -9.70325 -9.03783 -8.96697 -8.85710 -7.80008 -6.71343 -4.26140 0.57139 1.06590 1.76917 1.88661 2.69232 2.87088 3.11326 3.20478 3.24540 3.70113 3.83154 4.00148 4.52066 4.68878 4.75410 5.07147 5.15061 5.24113 5.25605 5.34190 5.44286 5.46812 5.72301 5.84727 5.94042 5.99984 6.02250 6.12793 6.15979 6.20273 6.26257 6.36488 6.43725 6.47852 6.60498 6.67335 6.73600 6.89562 7.11622 7.25401 7.48432 7.49141 8.05569 8.71477 9.15504 10.33159 Molecular weight = 354.06amu Principal moments of inertia in cm(-1) A = 0.010574 B = 0.004817 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.374749 B = 5811.616645 C = 6913.655696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.410 5.410 2 C 0.259 3.741 3 C -0.049 4.049 4 C 0.036 3.964 5 C -0.653 4.653 6 S 2.518 3.482 7 O -1.010 7.010 8 O -0.941 6.941 9 N -0.800 5.800 10 C -0.257 4.257 11 H 0.088 0.912 12 C 0.058 3.942 13 N -0.754 5.754 14 Si 0.912 3.088 15 H -0.263 1.263 16 H -0.272 1.272 17 H -0.277 1.277 18 C 0.157 3.843 19 C -0.119 4.119 20 C -0.124 4.124 21 C -0.116 4.116 22 C -0.137 4.137 23 C 0.003 3.997 24 C -0.136 4.136 25 C 0.030 3.970 26 Cl -0.061 7.061 27 H 0.154 0.846 28 H 0.283 0.717 29 H 0.078 0.922 30 H 0.094 0.906 31 H 0.056 0.944 32 H 0.057 0.943 33 H 0.059 0.941 34 H 0.051 0.949 35 H 0.066 0.934 36 H 0.053 0.947 37 H 0.077 0.923 38 H 0.147 0.853 39 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.162 -1.946 -9.049 9.781 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.086 5.086 2 C -0.056 4.056 3 C -0.054 4.054 4 C 0.015 3.985 5 C -0.726 4.726 6 S 2.617 3.383 7 O -0.999 6.999 8 O -0.929 6.929 9 N -0.622 5.622 10 C -0.409 4.409 11 H 0.106 0.894 12 C -0.162 4.162 13 N -0.389 5.389 14 Si 0.737 3.263 15 H -0.186 1.186 16 H -0.197 1.197 17 H -0.203 1.203 18 C 0.049 3.951 19 C -0.159 4.159 20 C -0.162 4.162 21 C -0.154 4.154 22 C -0.177 4.177 23 C -0.017 4.017 24 C -0.155 4.155 25 C 0.000 4.000 26 Cl -0.032 7.032 27 H 0.171 0.829 28 H 0.094 0.906 29 H 0.096 0.904 30 H 0.112 0.888 31 H 0.075 0.925 32 H 0.075 0.925 33 H 0.077 0.923 34 H 0.070 0.930 35 H 0.085 0.915 36 H 0.072 0.928 37 H 0.096 0.904 38 H 0.165 0.835 39 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges 1.596 -2.814 -8.195 8.810 hybrid contribution -0.836 -0.205 -0.557 1.025 sum 0.760 -3.019 -8.752 9.289 Atomic orbital electron populations 1.81176 1.11677 1.08008 1.07696 1.25387 0.92368 0.93911 0.93941 1.15988 0.84762 1.03846 1.00826 1.21008 0.92975 0.91652 0.92890 1.33212 1.05852 1.13845 1.19665 1.13255 0.73768 0.73136 0.78170 1.93298 1.41138 1.78369 1.87119 1.93433 1.66441 1.83176 1.49816 1.53107 1.23084 1.19954 1.66104 1.19151 1.18967 1.09755 0.92982 0.89401 1.25705 0.99282 0.95977 0.95225 1.69810 1.35804 1.33513 0.99797 0.86099 0.82240 0.78563 0.79378 1.18645 1.19707 1.20279 1.21354 0.85683 0.98186 0.89893 1.22636 0.98718 0.97511 0.96992 1.22471 0.97324 0.99744 0.96651 1.22241 0.97643 0.97677 0.97838 1.22567 1.02000 0.96187 0.96906 1.21149 1.00729 0.89913 0.89864 1.21105 0.91126 1.02040 1.01247 1.21042 0.92739 0.94278 0.91928 1.98386 1.77092 1.69119 1.58624 0.82883 0.90649 0.90389 0.88778 0.92493 0.92455 0.92260 0.93001 0.91494 0.92833 0.90442 0.83520 0.83870 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 24. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.41 -7.26 18.54 41.84 0.78 -6.49 16 2 C 0.26 4.31 14.39 -22.47 -0.32 3.99 16 3 C -0.05 -0.79 5.74 -106.87 -0.61 -1.40 16 4 C 0.04 0.64 9.23 -39.17 -0.36 0.28 16 5 C -0.65 -11.88 5.97 -39.64 -0.24 -12.12 16 6 S 2.52 55.59 5.43 -107.50 -0.58 55.01 16 7 O -1.01 -23.92 15.87 -57.17 -0.91 -24.83 16 8 O -0.94 -23.72 13.17 -57.17 -0.75 -24.47 16 9 N -0.80 -16.54 2.67 -52.34 -0.14 -16.68 16 10 C -0.26 -5.50 7.54 -15.06 -0.11 -5.61 16 11 H 0.09 1.77 7.03 -52.49 -0.37 1.40 16 12 C 0.06 1.33 4.03 -17.43 -0.07 1.26 16 13 N -0.75 -18.57 11.40 55.49 0.63 -17.94 16 14 Si 0.91 18.25 29.62 -169.99 -5.04 13.22 16 15 H -0.26 -5.03 7.11 56.52 0.40 -4.63 16 16 H -0.27 -5.74 7.11 56.52 0.40 -5.34 16 17 H -0.28 -5.41 7.11 56.52 0.40 -5.00 16 18 C 0.16 2.80 3.26 -66.81 -0.22 2.58 16 19 C -0.12 -2.06 6.43 -25.03 -0.16 -2.22 16 20 C -0.12 -1.69 6.91 -24.70 -0.17 -1.86 16 21 C -0.12 -1.56 6.83 -25.07 -0.17 -1.73 16 22 C -0.14 -2.05 6.21 -25.61 -0.16 -2.21 16 23 C 0.00 0.05 9.51 -39.50 -0.38 -0.33 16 24 C -0.14 -1.77 9.82 -39.60 -0.39 -2.16 16 25 C 0.03 0.42 6.35 -39.06 -0.25 0.17 16 26 Cl -0.06 -0.78 28.03 -51.86 -1.45 -2.23 16 27 H 0.15 2.75 7.60 -52.49 -0.40 2.35 16 28 H 0.28 6.63 8.32 -40.82 -0.34 6.29 16 29 H 0.08 1.38 7.00 -51.93 -0.36 1.01 16 30 H 0.09 1.84 7.17 -51.93 -0.37 1.47 16 31 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 32 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.75 8.14 -51.93 -0.42 0.33 16 34 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 35 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 37 H 0.08 1.22 6.71 -51.92 -0.35 0.87 16 38 H 0.15 2.04 7.60 -52.48 -0.40 1.64 16 39 H 0.14 1.40 8.06 -52.49 -0.42 0.98 16 LS Contribution 356.60 15.07 5.37 5.37 Total: -1.00 -27.19 356.60 -10.05 -37.24 By element: Atomic # 1 Polarization: 7.51 SS G_CDS: -4.35 Total: 3.17 kcal Atomic # 6 Polarization: -17.76 SS G_CDS: -3.61 Total: -21.37 kcal Atomic # 7 Polarization: -42.38 SS G_CDS: 1.27 Total: -41.11 kcal Atomic # 8 Polarization: -47.64 SS G_CDS: -1.66 Total: -49.30 kcal Atomic # 14 Polarization: 18.25 SS G_CDS: -5.04 Total: 13.22 kcal Atomic # 16 Polarization: 55.59 SS G_CDS: -0.58 Total: 55.01 kcal Atomic # 17 Polarization: -0.78 SS G_CDS: -1.45 Total: -2.23 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -27.19 -10.05 -37.24 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097002439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 17.903 kcal (2) G-P(sol) polarization free energy of solvation -27.191 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.238 kcal (6) G-S(sol) free energy of system = (1) + (5) -19.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds