Wall clock time and date at job start Tue Mar 31 2020 05:03:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.13601 * 1 3 3 C 1.43199 * 179.97438 * 2 1 4 4 C 1.39672 * 120.16154 * 229.91087 * 3 2 1 5 5 C 1.37894 * 119.85670 * 180.27210 * 4 3 2 6 6 S 1.76203 * 119.90629 * 179.70866 * 5 4 3 7 7 O 1.42100 * 106.40133 * 156.19131 * 6 5 4 8 8 O 1.42101 * 106.39901 * 23.26818 * 6 5 4 9 9 N 1.65595 * 107.21744 * 269.72869 * 6 5 4 10 10 C 1.36941 * 120.00137 * 90.00263 * 9 6 5 11 11 H 1.08002 * 119.99796 * 227.71511 * 10 9 6 12 12 C 1.38807 * 119.99813 * 47.70906 * 10 9 6 13 13 N 1.31619 * 120.00465 * 24.74119 * 12 10 9 14 14 Si 1.86803 * 119.99765 * 204.73625 * 12 10 9 15 15 H 1.48503 * 109.47237 * 0.02562 * 14 12 10 16 16 H 1.48495 * 109.47184 * 120.00059 * 14 12 10 17 17 H 1.48500 * 109.47475 * 240.00279 * 14 12 10 18 18 C 1.46497 * 120.00161 * 269.71985 * 9 6 5 19 19 C 1.54269 * 110.03669 * 241.59805 * 18 9 6 20 20 C 1.54958 * 104.15945 * 217.13620 * 19 18 9 21 21 C 1.54886 * 102.78203 * 37.88722 * 20 19 18 22 22 C 1.53873 * 110.03455 * 124.37981 * 18 9 6 23 23 C 1.38420 * 120.18831 * 359.44036 * 5 4 3 24 24 C 1.38278 * 120.32510 * 0.26441 * 23 5 4 25 25 C 1.38135 * 120.13969 * 0.03383 * 24 23 5 26 26 Cl 1.73601 * 120.09612 * 179.97438 * 25 24 23 27 27 H 1.08002 * 120.06962 * 0.02562 * 4 3 2 28 28 H 0.96996 * 119.99732 * 174.84874 * 13 12 10 29 29 H 1.09002 * 110.01475 * 2.99251 * 18 9 6 30 30 H 1.08997 * 110.48613 * 335.78569 * 19 18 9 31 31 H 1.09000 * 110.48062 * 98.42715 * 19 18 9 32 32 H 1.09005 * 110.72392 * 279.57098 * 20 19 18 33 33 H 1.09003 * 110.92365 * 156.29979 * 20 19 18 34 34 H 1.09002 * 110.49171 * 203.40280 * 21 20 19 35 35 H 1.09001 * 110.59799 * 80.81569 * 21 20 19 36 36 H 1.08992 * 110.03948 * 238.57506 * 22 18 9 37 37 H 1.09010 * 110.03061 * 359.95532 * 22 18 9 38 38 H 1.08005 * 119.83622 * 180.29606 * 23 5 4 39 39 H 1.08001 * 119.93530 * 179.97438 * 24 23 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.1360 0.0000 0.0000 3 6 2.5680 0.0006 0.0000 4 6 3.2694 0.7786 0.9239 5 6 4.6483 0.7789 0.9146 6 16 5.5345 1.7658 2.0745 7 8 6.8167 1.1690 2.2123 8 8 4.6562 1.9827 3.1704 9 7 5.7804 3.2453 1.3725 10 6 4.8571 4.2431 1.5368 11 1 4.5134 4.8069 0.6821 12 6 4.3628 4.5299 2.8018 13 7 5.0738 4.2333 3.8690 14 14 2.6887 5.3370 2.9896 15 1 2.0959 5.5656 1.6473 16 1 1.7972 4.4499 3.7792 17 1 2.8415 6.6367 3.6914 18 6 6.9887 3.4886 0.5807 19 6 7.8217 4.6181 1.2211 20 6 8.3935 5.4000 0.0116 21 6 7.2199 5.3742 -0.9988 22 6 6.6065 3.9688 -0.8303 23 6 5.3384 0.0018 0.0003 24 6 4.6517 -0.7761 -0.9138 25 6 3.2704 -0.7818 -0.9205 26 17 2.4095 -1.7583 -2.0690 27 1 2.7329 1.3818 1.6414 28 1 4.7632 4.5005 4.7482 29 1 7.5826 2.5769 0.5166 30 1 7.1864 5.2641 1.8270 31 1 8.6292 4.2019 1.8235 32 1 9.2669 4.8923 -0.3979 33 1 8.6399 6.4242 0.2915 34 1 7.5886 5.5102 -2.0155 35 1 6.4863 6.1424 -0.7542 36 1 7.0155 3.2907 -1.5792 37 1 5.5218 4.0201 -0.9263 38 1 6.4184 0.0026 0.0013 39 1 5.1965 -1.3797 -1.6246 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097002439.mol2 39 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:03:45 Heat of formation + Delta-G solvation = -33.357653 kcal Electronic energy + Delta-G solvation = -27626.184805 eV Core-core repulsion = 23686.368088 eV Total energy + Delta-G solvation = -3939.816716 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 354.059 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -40.61912 -39.31969 -37.78947 -37.71367 -37.54556 -36.06222 -35.61012 -33.16642 -32.67170 -32.12660 -29.27401 -28.41727 -25.92595 -25.26496 -24.27544 -21.28971 -21.03177 -20.95766 -20.33684 -18.42467 -17.85999 -17.53830 -17.17394 -17.16992 -16.80737 -16.07582 -15.88981 -15.55815 -15.33996 -15.19987 -14.52314 -14.42590 -14.21869 -14.07718 -14.03144 -13.81734 -13.57003 -13.40237 -13.08919 -12.97483 -12.86929 -12.82342 -12.38981 -12.33291 -12.13353 -12.11077 -11.99654 -11.74803 -11.65120 -11.62515 -11.38646 -11.19365 -11.14010 -10.55770 -10.26719 -10.21100 -9.42026 -8.42437 -5.98176 -0.69723 -0.21887 0.14329 0.69287 1.36152 1.48768 1.55968 1.57402 1.62867 2.32629 2.41381 2.52924 2.93234 3.05812 3.48422 3.55628 3.83684 3.98383 4.02993 4.06353 4.16518 4.30434 4.41350 4.58820 4.63924 4.71320 4.78111 4.87351 4.95496 4.99458 5.06230 5.09817 5.24229 5.27892 5.37403 5.42891 5.50392 5.52781 5.67968 5.80845 6.04647 6.16078 6.36574 7.06067 7.50240 8.63381 Molecular weight = 354.06amu Principal moments of inertia in cm(-1) A = 0.010574 B = 0.004817 C = 0.004049 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2647.374749 B = 5811.616645 C = 6913.655696 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.431 5.431 2 C 0.270 3.730 3 C -0.053 4.053 4 C 0.027 3.973 5 C -0.671 4.671 6 S 2.534 3.466 7 O -1.033 7.033 8 O -0.981 6.981 9 N -0.810 5.810 10 C -0.259 4.259 11 H 0.101 0.899 12 C 0.025 3.975 13 N -0.801 5.801 14 Si 0.953 3.047 15 H -0.244 1.244 16 H -0.293 1.293 17 H -0.270 1.270 18 C 0.145 3.855 19 C -0.124 4.124 20 C -0.114 4.114 21 C -0.112 4.112 22 C -0.132 4.132 23 C 0.007 3.993 24 C -0.114 4.114 25 C 0.039 3.961 26 Cl -0.040 7.040 27 H 0.138 0.862 28 H 0.278 0.722 29 H 0.077 0.923 30 H 0.063 0.937 31 H 0.045 0.955 32 H 0.077 0.923 33 H 0.069 0.931 34 H 0.080 0.920 35 H 0.058 0.942 36 H 0.079 0.921 37 H 0.067 0.933 38 H 0.163 0.837 39 H 0.188 0.812 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.702 -2.830 -12.608 13.441 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.106 5.106 2 C -0.045 4.045 3 C -0.058 4.058 4 C 0.005 3.995 5 C -0.750 4.750 6 S 2.636 3.364 7 O -1.022 7.022 8 O -0.969 6.969 9 N -0.634 5.634 10 C -0.409 4.409 11 H 0.118 0.882 12 C -0.192 4.192 13 N -0.438 5.438 14 Si 0.777 3.223 15 H -0.167 1.167 16 H -0.220 1.220 17 H -0.195 1.195 18 C 0.038 3.962 19 C -0.163 4.163 20 C -0.152 4.152 21 C -0.150 4.150 22 C -0.171 4.171 23 C -0.012 4.012 24 C -0.133 4.133 25 C 0.009 3.991 26 Cl -0.010 7.010 27 H 0.156 0.844 28 H 0.087 0.913 29 H 0.095 0.905 30 H 0.082 0.918 31 H 0.064 0.936 32 H 0.095 0.905 33 H 0.087 0.913 34 H 0.099 0.901 35 H 0.077 0.923 36 H 0.097 0.903 37 H 0.086 0.914 38 H 0.180 0.820 39 H 0.205 0.795 Dipole moment (debyes) X Y Z Total from point charges 2.159 -3.623 -11.750 12.483 hybrid contribution -0.988 -0.153 0.427 1.087 sum 1.170 -3.776 -11.322 11.993 Atomic orbital electron populations 1.81185 1.12252 1.08769 1.08434 1.25461 0.92420 0.93294 0.93322 1.15906 0.84299 1.04331 1.01256 1.20836 0.92863 0.92349 0.93435 1.32526 1.05943 1.15938 1.20544 1.11845 0.73055 0.73599 0.77878 1.93261 1.42270 1.79010 1.87694 1.93394 1.67272 1.84095 1.52170 1.52976 1.24093 1.19343 1.66941 1.19320 1.18778 1.09904 0.92864 0.88186 1.26355 1.01182 0.96294 0.95324 1.69891 1.37330 1.36510 1.00041 0.85471 0.79336 0.77705 0.79790 1.16730 1.22010 1.19468 1.21660 0.84753 0.98403 0.91410 1.22609 0.98023 0.97480 0.98222 1.22436 0.97994 0.99892 0.94836 1.22234 0.97136 0.96347 0.99245 1.22521 1.01650 0.97666 0.95243 1.21387 1.01565 0.89115 0.89176 1.21480 0.90538 1.00731 1.00559 1.21197 0.93363 0.93296 0.91258 1.98406 1.76817 1.68254 1.57541 0.84437 0.91250 0.90454 0.91805 0.93612 0.90457 0.91255 0.90095 0.92331 0.90267 0.91408 0.81974 0.79465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 32. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.43 -14.86 18.54 19.00 0.35 -14.50 16 2 C 0.27 8.67 14.39 88.33 1.27 9.94 16 3 C -0.05 -1.61 5.74 -21.32 -0.12 -1.73 16 4 C 0.03 0.95 9.23 22.53 0.21 1.15 16 5 C -0.67 -24.02 5.97 22.23 0.13 -23.89 16 6 S 2.53 114.54 5.43 -56.49 -0.31 114.24 16 7 O -1.03 -49.69 15.87 -128.00 -2.03 -51.72 16 8 O -0.98 -51.86 13.17 -128.00 -1.69 -53.55 16 9 N -0.81 -34.06 2.67 -319.51 -0.85 -34.91 16 10 C -0.26 -11.32 7.54 84.03 0.63 -10.69 16 11 H 0.10 4.03 7.03 -2.91 -0.02 4.01 16 12 C 0.02 1.16 4.03 84.86 0.34 1.50 16 13 N -0.80 -41.73 11.40 21.65 0.25 -41.49 16 14 Si 0.95 38.42 29.62 68.60 2.03 40.45 16 15 H -0.24 -9.00 7.11 99.48 0.71 -8.30 16 16 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 17 H -0.27 -10.40 7.11 99.48 0.71 -9.69 16 18 C 0.14 5.10 3.26 45.72 0.15 5.25 16 19 C -0.12 -4.31 6.43 31.69 0.20 -4.10 16 20 C -0.11 -2.87 6.91 31.91 0.22 -2.65 16 21 C -0.11 -2.69 6.83 31.67 0.22 -2.48 16 22 C -0.13 -3.63 6.21 31.32 0.19 -3.44 16 23 C 0.01 0.20 9.51 22.32 0.21 0.42 16 24 C -0.11 -2.49 9.82 22.25 0.22 -2.27 16 25 C 0.04 0.96 6.35 22.61 0.14 1.11 16 26 Cl -0.04 -0.87 28.03 -2.72 -0.08 -0.94 16 27 H 0.14 5.17 7.60 -2.91 -0.02 5.15 16 28 H 0.28 13.93 8.32 -92.71 -0.77 13.16 16 29 H 0.08 2.68 7.00 -2.39 -0.02 2.67 16 30 H 0.06 2.60 7.17 -2.39 -0.02 2.59 16 31 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 32 H 0.08 1.67 8.14 -2.38 -0.02 1.65 16 33 H 0.07 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.08 1.52 8.14 -2.39 -0.02 1.50 16 35 H 0.06 1.51 8.14 -2.39 -0.02 1.49 16 36 H 0.08 1.77 8.14 -2.39 -0.02 1.75 16 37 H 0.07 2.02 6.71 -2.38 -0.02 2.00 16 38 H 0.16 4.02 7.60 -2.91 -0.02 3.99 16 39 H 0.19 2.50 8.06 -2.91 -0.02 2.48 16 Total: -1.00 -61.52 356.60 2.80 -58.72 By element: Atomic # 1 Polarization: 14.49 SS G_CDS: 1.09 Total: 15.58 kcal Atomic # 6 Polarization: -35.90 SS G_CDS: 4.02 Total: -31.88 kcal Atomic # 7 Polarization: -90.65 SS G_CDS: -0.25 Total: -90.90 kcal Atomic # 8 Polarization: -101.55 SS G_CDS: -3.72 Total: -105.27 kcal Atomic # 14 Polarization: 38.42 SS G_CDS: 2.03 Total: 40.45 kcal Atomic # 16 Polarization: 114.54 SS G_CDS: -0.31 Total: 114.24 kcal Atomic # 17 Polarization: -0.87 SS G_CDS: -0.08 Total: -0.94 kcal Total: -61.52 2.80 -58.72 kcal The number of atoms in the molecule is 39 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097002439.mol2 39 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 25.366 kcal (2) G-P(sol) polarization free energy of solvation -61.519 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.153 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.795 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.723 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds