Wall clock time and date at job start Tue Mar 31 2020 06:15:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50704 * 1 3 3 N 1.29314 * 126.06306 * 2 1 4 4 N 1.26107 * 117.96793 * 179.73352 * 3 2 1 5 5 C 1.30247 * 117.61814 * 0.54587 * 4 3 2 6 6 N 1.38697 * 126.16502 * 179.76519 * 5 4 3 7 7 C 1.46500 * 120.00107 * 359.69042 * 6 5 4 8 8 C 1.50706 * 109.47038 * 179.97438 * 7 6 5 9 9 C 1.35084 * 126.07650 * 259.69090 * 8 7 6 10 10 N 1.35039 * 107.97397 * 179.83811 * 9 8 7 11 11 C 1.46502 * 125.92838 * 180.16476 * 10 9 8 12 12 C 1.50706 * 109.47379 * 125.28414 * 11 10 9 13 13 H 1.07994 * 119.99496 * 0.02562 * 12 11 10 14 14 C 1.37879 * 119.99784 * 179.97438 * 12 11 10 15 15 N 1.31513 * 119.99406 * 179.97438 * 14 12 11 16 16 Si 1.86790 * 120.00338 * 0.02562 * 14 12 11 17 17 H 1.48503 * 109.47050 * 89.99696 * 16 14 12 18 18 H 1.48502 * 109.47157 * 209.99993 * 16 14 12 19 19 H 1.48501 * 109.47095 * 330.00080 * 16 14 12 20 20 N 1.40071 * 108.14112 * 0.42481 * 10 9 8 21 21 C 1.31620 * 108.10735 * 359.73931 * 20 10 9 22 22 C 1.48422 * 126.03292 * 180.02562 * 21 20 10 23 23 C 1.39329 * 120.11408 * 144.68271 * 22 21 20 24 24 C 1.38022 * 119.87427 * 179.74572 * 23 22 21 25 25 C 1.38318 * 120.11974 * 0.55266 * 24 23 22 26 26 C 1.38314 * 120.24383 * 359.69784 * 25 24 23 27 27 C 1.38024 * 120.11908 * 0.02562 * 26 25 24 28 28 S 1.76487 * 126.06456 * 180.02562 * 2 1 3 29 29 H 1.09002 * 109.47084 * 269.97667 * 1 2 3 30 30 H 1.08996 * 109.47431 * 29.97632 * 1 2 3 31 31 H 1.08997 * 109.46721 * 149.97894 * 1 2 3 32 32 H 0.97000 * 119.99704 * 179.69236 * 6 5 4 33 33 H 1.09000 * 109.47164 * 60.00460 * 7 6 5 34 34 H 1.08997 * 109.47485 * 300.00122 * 7 6 5 35 35 H 1.07996 * 126.01233 * 0.02562 * 9 8 7 36 36 H 1.08997 * 109.47119 * 245.28595 * 11 10 9 37 37 H 1.09000 * 109.46860 * 5.28399 * 11 10 9 38 38 H 0.97000 * 119.99557 * 179.97438 * 15 14 12 39 39 H 1.08002 * 120.05794 * 359.97438 * 23 22 21 40 40 H 1.08000 * 119.93549 * 180.26948 * 24 23 22 41 41 H 1.07998 * 119.87597 * 179.72130 * 25 24 23 42 42 H 1.07999 * 119.93996 * 180.02562 * 26 25 24 43 43 H 1.08000 * 120.05923 * 180.02562 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2683 1.0453 0.0000 4 7 3.5168 0.8678 0.0052 5 6 3.9521 -0.3598 -0.0008 6 7 5.2810 -0.7570 -0.0013 7 6 6.3461 0.2488 -0.0015 8 6 7.6869 -0.4394 -0.0013 9 6 8.4838 -0.6286 1.0729 10 7 9.5898 -1.2848 0.6608 11 6 10.7128 -1.6932 1.5083 12 6 10.9477 -3.1736 1.3521 13 1 10.3232 -3.7522 0.6877 14 6 11.9606 -3.7890 2.0568 15 7 12.1651 -5.0809 1.9208 16 14 13.0412 -2.7879 3.2054 17 1 12.4410 -2.7750 4.5637 18 1 14.3943 -3.3966 3.2678 19 1 13.1472 -1.3964 2.6978 20 7 9.4795 -1.5019 -0.7186 21 6 8.3343 -0.9941 -1.1224 22 6 7.8166 -1.0049 -2.5133 23 6 6.4507 -1.1459 -2.7497 24 6 5.9740 -1.1500 -4.0450 25 6 6.8507 -1.0259 -5.1077 26 6 8.2081 -0.8908 -4.8788 27 6 8.6950 -0.8797 -3.5874 28 16 2.5460 -1.4266 -0.0006 29 1 -0.3633 -0.0004 1.0277 30 1 -0.3634 0.8901 -0.5134 31 1 -0.3633 -0.8898 -0.5142 32 1 5.5050 -1.7007 -0.0015 33 1 6.2578 0.8717 0.8887 34 1 6.2573 0.8720 -0.8913 35 1 8.2721 -0.3135 2.0839 36 1 11.6093 -1.1496 1.2103 37 1 10.4819 -1.4698 2.5499 38 1 12.8780 -5.5138 2.4162 39 1 5.7660 -1.2481 -1.9208 40 1 4.9150 -1.2549 -4.2292 41 1 6.4739 -1.0341 -6.1197 42 1 8.8882 -0.7938 -5.7122 43 1 9.7551 -0.7738 -3.4098 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097045313.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:15:52 Heat of formation + Delta-G solvation = 153.709136 kcal Electronic energy + Delta-G solvation = -27562.310339 eV Core-core repulsion = 23735.738232 eV Total energy + Delta-G solvation = -3826.572108 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 355.116 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -42.33348 -41.76042 -39.81682 -37.69571 -35.71439 -34.18787 -33.38814 -32.20058 -31.88378 -31.45781 -29.61199 -28.67061 -26.84905 -25.22519 -24.94658 -23.55904 -23.18045 -21.54432 -20.91771 -20.73776 -19.94212 -19.12970 -18.38609 -17.78279 -17.41887 -16.86026 -16.47975 -16.27038 -16.16709 -15.80853 -15.60184 -15.08629 -14.86909 -14.70821 -14.43643 -14.34044 -14.14333 -14.06057 -14.00212 -13.81473 -13.53627 -13.50050 -13.28361 -12.92116 -12.55161 -12.22594 -12.13132 -12.04471 -11.84419 -11.70093 -11.39404 -11.35813 -10.93865 -10.91770 -10.65931 -10.44239 -9.88399 -9.72010 -9.23701 -9.03085 -8.42136 -6.53027 -0.29568 -0.21396 0.12053 0.38650 0.46706 1.01630 1.32476 1.34895 1.44378 1.63388 1.71636 1.79442 2.24325 2.30127 2.89517 2.92984 3.44963 3.52558 3.71611 3.91049 4.00977 4.03448 4.10219 4.22592 4.27370 4.34466 4.38910 4.54714 4.56735 4.64442 4.67307 4.76355 4.88253 4.91049 4.92334 5.08963 5.11561 5.19755 5.20415 5.40316 5.56320 5.62495 5.63313 5.71210 5.89408 6.04764 6.11538 6.28883 6.52290 6.82551 7.09977 7.85564 8.74869 Molecular weight = 355.12amu Principal moments of inertia in cm(-1) A = 0.009628 B = 0.002861 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2907.360656 B = 9784.106603 C =11770.355813 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.066 4.066 2 C 0.003 3.997 3 N -0.263 5.263 4 N -0.372 5.372 5 C 0.299 3.701 6 N -0.668 5.668 7 C 0.232 3.768 8 C -0.268 4.268 9 C 0.082 3.918 10 N -0.343 5.343 11 C 0.236 3.764 12 C -0.547 4.547 13 H 0.026 0.974 14 C 0.016 3.984 15 N -0.940 5.940 16 Si 0.954 3.046 17 H -0.252 1.252 18 H -0.282 1.282 19 H -0.240 1.240 20 N -0.314 5.314 21 C 0.099 3.901 22 C -0.028 4.028 23 C -0.113 4.113 24 C -0.123 4.123 25 C -0.111 4.111 26 C -0.122 4.122 27 C -0.114 4.114 28 S 0.043 5.957 29 H 0.101 0.899 30 H 0.098 0.902 31 H 0.101 0.899 32 H 0.420 0.580 33 H 0.087 0.913 34 H 0.072 0.928 35 H 0.210 0.790 36 H 0.045 0.955 37 H 0.083 0.917 38 H 0.273 0.727 39 H 0.134 0.866 40 H 0.146 0.854 41 H 0.155 0.845 42 H 0.146 0.854 43 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.106 11.053 -6.290 24.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.127 4.127 2 C -0.283 4.283 3 N -0.096 5.096 4 N -0.220 5.220 5 C -0.075 4.075 6 N -0.309 5.309 7 C 0.107 3.893 8 C -0.281 4.281 9 C -0.067 4.067 10 N -0.122 5.122 11 C 0.117 3.883 12 C -0.585 4.585 13 H 0.045 0.955 14 C -0.183 4.183 15 N -0.579 5.579 16 Si 0.774 3.226 17 H -0.176 1.176 18 H -0.207 1.207 19 H -0.163 1.163 20 N -0.137 5.137 21 C -0.066 4.066 22 C -0.030 4.030 23 C -0.133 4.133 24 C -0.141 4.141 25 C -0.130 4.130 26 C -0.140 4.140 27 C -0.133 4.133 28 S 0.280 5.720 29 H 0.119 0.881 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.260 0.740 33 H 0.105 0.895 34 H 0.090 0.910 35 H 0.227 0.773 36 H 0.063 0.937 37 H 0.100 0.900 38 H 0.082 0.918 39 H 0.151 0.849 40 H 0.163 0.837 41 H 0.172 0.828 42 H 0.164 0.836 43 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges -19.539 10.685 -6.422 23.177 hybrid contribution 0.746 -0.443 0.799 1.180 sum -18.792 10.241 -5.623 22.128 Atomic orbital electron populations 1.20505 0.81343 1.05567 1.05258 1.29955 1.03668 0.87559 1.07084 1.70643 0.96778 1.27984 1.14239 1.71304 1.06125 1.16089 1.28480 1.26876 0.91841 0.91558 0.97179 1.44487 0.98768 1.10240 1.77361 1.19348 0.79101 0.87974 1.02924 1.19855 1.00621 1.15986 0.91626 1.23007 0.86946 0.95443 1.01350 1.48877 1.16939 1.40864 1.05507 1.19918 0.83649 0.94945 0.89813 1.21171 1.17696 0.92338 1.27298 0.95512 1.25901 0.98086 0.96069 0.98273 1.70045 1.32882 1.11741 1.43226 0.85644 0.77873 0.79711 0.79333 1.17602 1.20717 1.16333 1.77708 1.20441 1.23553 0.91966 1.21045 0.92696 0.98407 0.94441 1.17991 0.94005 1.02633 0.88360 1.21607 0.93549 0.99339 0.98803 1.21368 1.01040 0.99910 0.91802 1.21585 0.92850 0.98134 1.00401 1.21365 0.96757 0.99838 0.96052 1.21331 0.99194 0.99672 0.93135 1.85835 0.99229 1.11467 1.75478 0.88105 0.88326 0.88009 0.74017 0.89529 0.91004 0.77312 0.93726 0.89955 0.91834 0.84861 0.83659 0.82771 0.83601 0.87265 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.61 10.51 71.24 0.75 0.14 16 2 C 0.00 0.06 7.79 88.48 0.69 0.75 16 3 N -0.26 -6.77 11.55 -47.71 -0.55 -7.32 16 4 N -0.37 -10.28 11.24 -55.84 -0.63 -10.91 16 5 C 0.30 7.02 8.51 179.13 1.52 8.55 16 6 N -0.67 -15.22 3.58 -349.47 -1.25 -16.47 16 7 C 0.23 5.69 5.42 85.64 0.46 6.15 16 8 C -0.27 -8.19 5.44 -19.95 -0.11 -8.29 16 9 C 0.08 2.61 11.33 83.47 0.95 3.55 16 10 N -0.34 -14.33 3.67 -351.91 -1.29 -15.62 16 11 C 0.24 10.49 5.33 85.63 0.46 10.94 16 12 C -0.55 -30.81 9.79 25.60 0.25 -30.56 16 13 H 0.03 1.77 8.06 -2.91 -0.02 1.75 16 14 C 0.02 0.88 5.47 84.66 0.46 1.35 16 15 N -0.94 -57.29 13.96 21.45 0.30 -56.99 16 16 Si 0.95 39.94 27.47 68.60 1.88 41.83 16 17 H -0.25 -9.75 7.11 99.48 0.71 -9.05 16 18 H -0.28 -11.87 7.11 99.48 0.71 -11.16 16 19 H -0.24 -9.06 6.54 99.48 0.65 -8.41 16 20 N -0.31 -14.09 12.40 -48.16 -0.60 -14.69 16 21 C 0.10 3.62 6.74 42.53 0.29 3.91 16 22 C -0.03 -0.91 5.80 -20.04 -0.12 -1.02 16 23 C -0.11 -3.04 8.78 22.48 0.20 -2.84 16 24 C -0.12 -2.69 10.03 22.24 0.22 -2.47 16 25 C -0.11 -2.25 10.04 22.31 0.22 -2.02 16 26 C -0.12 -2.88 10.03 22.24 0.22 -2.66 16 27 C -0.11 -3.51 9.75 22.48 0.22 -3.29 16 28 S 0.04 0.79 23.54 -56.49 -1.33 -0.54 16 29 H 0.10 0.68 8.14 -2.39 -0.02 0.66 16 30 H 0.10 0.82 8.14 -2.39 -0.02 0.80 16 31 H 0.10 0.53 8.14 -2.39 -0.02 0.51 16 32 H 0.42 9.40 8.13 -92.71 -0.75 8.64 16 33 H 0.09 1.95 8.14 -2.39 -0.02 1.93 16 34 H 0.07 1.87 7.78 -2.39 -0.02 1.85 16 35 H 0.21 4.76 8.06 -2.91 -0.02 4.73 16 36 H 0.04 1.97 7.20 -2.39 -0.02 1.95 16 37 H 0.08 3.10 7.50 -2.39 -0.02 3.08 16 38 H 0.27 15.31 8.31 -92.71 -0.77 14.54 16 39 H 0.13 3.33 4.46 -2.91 -0.01 3.32 16 40 H 0.15 2.39 8.06 -2.91 -0.02 2.37 16 41 H 0.15 2.03 8.06 -2.91 -0.02 2.01 16 42 H 0.15 2.65 8.06 -2.91 -0.02 2.63 16 43 H 0.11 3.63 8.06 -2.91 -0.02 3.61 16 Total: -1.00 -76.26 383.20 3.48 -72.77 By element: Atomic # 1 Polarization: 25.49 SS G_CDS: 0.25 Total: 25.75 kcal Atomic # 6 Polarization: -24.50 SS G_CDS: 6.69 Total: -17.81 kcal Atomic # 7 Polarization: -117.97 SS G_CDS: -4.02 Total: -121.99 kcal Atomic # 14 Polarization: 39.94 SS G_CDS: 1.88 Total: 41.83 kcal Atomic # 16 Polarization: 0.79 SS G_CDS: -1.33 Total: -0.54 kcal Total: -76.26 3.48 -72.77 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097045313.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 226.482 kcal (2) G-P(sol) polarization free energy of solvation -76.255 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 150.227 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.482 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.773 kcal (6) G-S(sol) free energy of system = (1) + (5) 153.709 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds