Wall clock time and date at job start Tue Mar 31 2020 05:01:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31626 * 1 3 3 Si 1.86802 * 120.00063 * 2 1 4 4 H 1.48500 * 109.46898 * 179.97438 * 3 2 1 5 5 H 1.48501 * 109.46627 * 299.99508 * 3 2 1 6 6 H 1.48495 * 109.47482 * 59.99456 * 3 2 1 7 7 C 1.38809 * 119.99706 * 179.97438 * 2 1 3 8 8 H 1.07999 * 119.99544 * 169.20209 * 7 2 1 9 9 N 1.36936 * 120.00337 * 349.47734 * 7 2 1 10 10 C 1.46966 * 120.59345 * 147.63393 * 9 7 2 11 11 C 1.53812 * 108.39437 * 124.76335 * 10 9 7 12 12 N 1.46956 * 108.58137 * 49.63587 * 11 10 9 13 13 C 1.34782 * 120.59653 * 124.66921 * 12 11 10 14 14 O 1.21558 * 120.00380 * 186.14039 * 13 12 11 15 15 C 1.47820 * 119.99470 * 6.14029 * 13 12 11 16 16 C 1.39622 * 120.11060 * 44.29366 * 15 13 12 17 17 C 1.37930 * 119.96854 * 179.67499 * 16 15 13 18 18 C 1.38384 * 120.19852 * 0.62182 * 17 16 15 19 19 Br 1.89104 * 119.89018 * 179.69902 * 18 17 16 20 20 C 1.38913 * 120.21965 * 359.67420 * 18 17 16 21 21 O 1.35928 * 119.98770 * 180.02562 * 20 18 17 22 22 C 1.38423 * 120.02649 * 0.02562 * 20 18 17 23 23 C 1.46962 * 118.81377 * 304.64637 * 12 11 10 24 24 C 1.46966 * 120.58989 * 327.92143 * 9 7 2 25 25 H 0.97007 * 119.99628 * 0.02562 * 1 2 3 26 26 H 1.08998 * 109.60519 * 244.54086 * 10 9 7 27 27 H 1.08996 * 109.61027 * 5.05462 * 10 9 7 28 28 H 1.08998 * 109.73892 * 289.84530 * 11 10 9 29 29 H 1.09002 * 109.67164 * 169.38608 * 11 10 9 30 30 H 1.08001 * 120.01013 * 359.97438 * 16 15 13 31 31 H 1.08006 * 119.89596 * 180.31733 * 17 16 15 32 32 H 0.96708 * 113.99817 * 269.98117 * 21 20 18 33 33 H 1.08003 * 120.10110 * 179.97438 * 22 20 18 34 34 H 1.08999 * 109.61213 * 295.48253 * 23 12 11 35 35 H 1.09000 * 109.75491 * 175.05707 * 23 12 11 36 36 H 1.08991 * 109.61323 * 354.93680 * 24 9 7 37 37 H 1.08998 * 109.61347 * 115.45716 * 24 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3163 0.0000 0.0000 3 14 2.2503 1.6177 0.0000 4 1 3.7103 1.3463 0.0006 5 1 1.8916 2.3963 -1.2126 6 1 1.8915 2.3965 1.2124 7 6 2.0102 -1.2022 0.0005 8 1 3.0759 -1.2105 -0.1747 9 7 1.3428 -2.3780 0.2176 10 6 1.7888 -3.6212 -0.4269 11 6 2.0270 -4.6765 0.6665 12 7 0.8483 -4.7165 1.5432 13 6 0.1913 -5.8738 1.7569 14 8 -0.8450 -5.8761 2.3923 15 6 0.7310 -7.1403 1.2186 16 6 2.0924 -7.4274 1.3356 17 6 2.5918 -8.6130 0.8382 18 6 1.7495 -9.5145 0.2114 19 35 2.4450 -11.1336 -0.4749 20 6 0.3948 -9.2344 0.0851 21 8 -0.4283 -10.1235 -0.5310 22 6 -0.1172 -8.0501 0.5864 23 6 0.3990 -3.4723 2.1833 24 6 0.1640 -2.4180 1.0944 25 1 -0.4850 0.8401 -0.0004 26 1 1.0206 -3.9717 -1.1162 27 1 2.7160 -3.4393 -0.9703 28 1 2.9081 -4.4096 1.2500 29 1 2.1747 -5.6539 0.2071 30 1 2.7532 -6.7235 1.8196 31 1 3.6442 -8.8362 0.9339 32 1 -0.5128 -9.9859 -1.4845 33 1 -1.1702 -7.8308 0.4885 34 1 1.1642 -3.1196 2.8749 35 1 -0.5295 -3.6513 2.7255 36 1 0.0182 -1.4416 1.5561 37 1 -0.7171 -2.6849 0.5109 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097050620.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:56 Heat of formation + Delta-G solvation = -8.872317 kcal Electronic energy + Delta-G solvation = -23177.582895 eV Core-core repulsion = 19581.647385 eV Total energy + Delta-G solvation = -3595.935509 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 354.037 amu Computer time = 1.61 seconds Orbital eigenvalues (eV) -40.60541 -39.19136 -37.00504 -36.73747 -34.02205 -32.68224 -31.25429 -30.67925 -30.46695 -29.16443 -27.02081 -24.33518 -23.47176 -22.91008 -22.59114 -20.78073 -19.40774 -18.33903 -17.06338 -16.53056 -16.42926 -16.10551 -15.55134 -15.09755 -14.93528 -14.64380 -14.16260 -13.73431 -13.49743 -13.42761 -13.33612 -13.06932 -12.51232 -12.48578 -12.05149 -11.80455 -11.27882 -11.16733 -11.07873 -10.88755 -10.79433 -10.61269 -10.54382 -10.29877 -10.08289 -9.93491 -9.61606 -9.22670 -8.86405 -8.65129 -8.36396 -6.72507 -5.89800 -3.41615 0.43824 0.86756 1.27911 2.68504 3.07811 3.29848 3.37481 3.39304 3.44048 3.79544 4.37311 4.44181 4.50785 4.76199 4.97243 5.11956 5.20476 5.28940 5.47409 5.64283 5.65254 5.67240 5.76890 5.80800 5.96555 6.06791 6.20854 6.26016 6.30921 6.43574 6.62691 6.77243 7.19292 7.23155 7.51494 7.66841 7.73498 8.33392 8.34667 9.07440 9.67801 10.26060 11.17137 Molecular weight = 354.04amu Principal moments of inertia in cm(-1) A = 0.023730 B = 0.002511 C = 0.002382 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1179.653007 B =11146.743643 C =11751.092811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.902 5.902 2 C 0.006 3.994 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.289 1.289 6 H -0.288 1.288 7 C -0.259 4.259 8 H 0.067 0.933 9 N -0.591 5.591 10 C 0.131 3.869 11 C 0.080 3.920 12 N -0.586 5.586 13 C 0.548 3.452 14 O -0.542 6.542 15 C -0.083 4.083 16 C -0.092 4.092 17 C -0.082 4.082 18 C -0.107 4.107 19 Br -0.038 7.038 20 C 0.130 3.870 21 O -0.484 6.484 22 C -0.090 4.090 23 C 0.085 3.915 24 C 0.159 3.841 25 H 0.256 0.744 26 H 0.024 0.976 27 H 0.068 0.932 28 H 0.069 0.931 29 H 0.078 0.922 30 H 0.144 0.856 31 H 0.143 0.857 32 H 0.395 0.605 33 H 0.146 0.854 34 H 0.063 0.937 35 H 0.082 0.918 36 H 0.102 0.898 37 H 0.024 0.976 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.874 -21.284 -1.137 22.109 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.546 5.546 2 C -0.193 4.193 3 Si 0.736 3.264 4 H -0.202 1.202 5 H -0.216 1.216 6 H -0.215 1.215 7 C -0.389 4.389 8 H 0.085 0.915 9 N -0.314 5.314 10 C 0.004 3.996 11 C -0.044 4.044 12 N -0.317 5.317 13 C 0.335 3.665 14 O -0.421 6.421 15 C -0.086 4.086 16 C -0.111 4.111 17 C -0.102 4.102 18 C -0.187 4.187 19 Br 0.047 6.953 20 C 0.083 3.917 21 O -0.294 6.294 22 C -0.110 4.110 23 C -0.038 4.038 24 C 0.033 3.967 25 H 0.066 0.934 26 H 0.041 0.959 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.096 0.904 30 H 0.161 0.839 31 H 0.161 0.839 32 H 0.252 0.748 33 H 0.164 0.836 34 H 0.082 0.918 35 H 0.100 0.900 36 H 0.120 0.880 37 H 0.042 0.958 Dipole moment (debyes) X Y Z Total from point charges 5.423 -21.923 -0.516 22.590 hybrid contribution 0.318 1.403 -0.424 1.500 sum 5.741 -20.520 -0.940 21.329 Atomic orbital electron populations 1.69968 1.05349 1.25706 1.53544 1.25234 0.95430 0.98631 0.99982 0.86161 0.79260 0.83575 0.77370 1.20155 1.21563 1.21451 1.19219 0.90909 0.83666 1.45086 0.91513 1.43988 1.32612 1.03882 1.50906 1.21375 0.98631 0.87404 0.92228 1.22756 0.87271 1.00818 0.93568 1.48008 1.29504 1.07942 1.46218 1.18217 0.84118 0.83347 0.80794 1.90776 1.22838 1.86456 1.42062 1.20059 0.93908 0.95539 0.99117 1.21436 0.94119 0.96770 0.98765 1.20975 0.99970 0.92475 0.96770 1.22477 0.94676 0.95284 1.06252 1.96725 1.85368 1.28135 1.85058 1.17952 0.87141 0.89069 0.97553 1.84865 1.65778 1.52711 1.26084 1.21440 1.01007 0.91155 0.97383 1.22607 0.99935 0.83818 0.97398 1.21205 0.88644 0.97206 0.89632 0.93395 0.95853 0.91344 0.91285 0.90368 0.83874 0.83936 0.74801 0.83615 0.91834 0.89961 0.88005 0.95781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 43. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.90 -25.21 11.06 55.49 0.61 -24.59 16 2 C 0.01 0.17 5.05 -17.43 -0.09 0.08 16 3 Si 0.91 20.74 29.57 -169.99 -5.03 15.72 16 4 H -0.28 -6.15 7.11 56.52 0.40 -5.74 16 5 H -0.29 -6.71 7.11 56.52 0.40 -6.31 16 6 H -0.29 -6.63 7.11 56.52 0.40 -6.23 16 7 C -0.26 -6.69 9.57 -15.06 -0.14 -6.83 16 8 H 0.07 1.68 7.85 -52.49 -0.41 1.27 16 9 N -0.59 -13.93 2.95 -171.77 -0.51 -14.44 16 10 C 0.13 2.50 6.70 -3.37 -0.02 2.47 16 11 C 0.08 1.23 5.27 -3.37 -0.02 1.21 16 12 N -0.59 -10.15 2.95 -173.34 -0.51 -10.66 16 13 C 0.55 9.40 7.26 -12.34 -0.09 9.31 16 14 O -0.54 -11.07 16.40 5.31 0.09 -10.98 16 15 C -0.08 -1.12 4.98 -104.98 -0.52 -1.64 16 16 C -0.09 -0.99 7.42 -39.18 -0.29 -1.28 16 17 C -0.08 -0.78 9.76 -39.64 -0.39 -1.17 16 18 C -0.11 -1.10 6.24 -39.28 -0.25 -1.35 16 19 Br -0.04 -0.35 33.14 -68.01 -2.25 -2.61 16 20 C 0.13 1.44 6.69 -39.26 -0.26 1.17 16 21 O -0.48 -4.67 12.82 -19.51 -0.25 -4.92 16 22 C -0.09 -1.13 9.62 -39.03 -0.38 -1.51 16 23 C 0.09 1.65 6.59 -3.60 -0.02 1.63 16 24 C 0.16 3.68 5.45 -3.59 -0.02 3.66 16 25 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 26 H 0.02 0.47 8.14 -51.93 -0.42 0.04 16 27 H 0.07 1.23 7.93 -51.93 -0.41 0.81 16 28 H 0.07 1.00 8.14 -51.93 -0.42 0.58 16 29 H 0.08 0.98 4.88 -51.93 -0.25 0.73 16 30 H 0.14 1.38 6.99 -52.49 -0.37 1.02 16 31 H 0.14 1.03 8.06 -52.48 -0.42 0.61 16 32 H 0.39 2.08 9.06 45.56 0.41 2.50 16 33 H 0.15 1.86 8.06 -52.48 -0.42 1.44 16 34 H 0.06 1.18 8.14 -51.93 -0.42 0.76 16 35 H 0.08 1.60 7.00 -51.93 -0.36 1.23 16 36 H 0.10 2.61 6.06 -51.93 -0.31 2.29 16 37 H 0.02 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 327.59 15.07 4.94 4.94 Total: -1.00 -31.27 327.59 -8.78 -40.05 By element: Atomic # 1 Polarization: 5.13 SS G_CDS: -3.38 Total: 1.75 kcal Atomic # 6 Polarization: 8.24 SS G_CDS: -2.49 Total: 5.75 kcal Atomic # 7 Polarization: -49.29 SS G_CDS: -0.40 Total: -49.69 kcal Atomic # 8 Polarization: -15.74 SS G_CDS: -0.16 Total: -15.90 kcal Atomic # 14 Polarization: 20.74 SS G_CDS: -5.03 Total: 15.72 kcal Atomic # 35 Polarization: -0.35 SS G_CDS: -2.25 Total: -2.61 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -31.27 -8.78 -40.05 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097050620.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.179 kcal (2) G-P(sol) polarization free energy of solvation -31.272 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -0.092 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.780 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.052 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.872 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.61 seconds