Wall clock time and date at job start Tue Mar 31 2020 05:01:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30628 * 1 3 3 Si 1.86801 * 120.00020 * 2 1 4 4 H 1.48505 * 109.47107 * 274.99336 * 3 2 1 5 5 H 1.48502 * 109.47247 * 34.99488 * 3 2 1 6 6 H 1.48507 * 109.46957 * 154.99754 * 3 2 1 7 7 C 1.40147 * 119.99904 * 179.97438 * 2 1 3 8 8 H 1.07994 * 119.99870 * 174.95254 * 7 2 1 9 9 C 1.41695 * 119.99806 * 354.95803 * 7 2 1 10 10 O 1.21791 * 120.00129 * 5.04293 * 9 7 2 11 11 N 1.34775 * 119.99647 * 185.05060 * 9 7 2 12 12 C 1.39463 * 120.00072 * 184.48105 * 11 9 7 13 13 C 1.38926 * 120.11610 * 325.29176 * 12 11 9 14 14 C 1.38151 * 119.97478 * 179.97438 * 13 12 11 15 15 Br 1.89106 * 119.88306 * 179.97438 * 14 13 12 16 16 C 1.38564 * 120.23139 * 359.71368 * 14 13 12 17 17 C 1.38160 * 120.23956 * 0.56311 * 16 14 13 18 18 C 1.38760 * 120.01825 * 359.44179 * 17 16 14 19 19 N 1.39647 * 120.11372 * 180.30068 * 18 17 16 20 20 C 1.47013 * 110.99831 * 63.63550 * 19 18 17 21 21 C 1.53105 * 109.25515 * 177.60819 * 20 19 18 22 22 O 1.43010 * 109.25828 * 56.85021 * 21 20 19 23 23 C 1.43025 * 113.73577 * 301.32731 * 22 21 20 24 24 C 1.47008 * 111.00091 * 300.00087 * 19 18 17 25 25 H 0.97004 * 119.99847 * 0.02562 * 1 2 3 26 26 H 0.96997 * 120.00186 * 4.47191 * 11 9 7 27 27 H 1.07996 * 120.00855 * 359.94939 * 13 12 11 28 28 H 1.07997 * 119.87813 * 180.28096 * 16 14 13 29 29 H 1.08004 * 119.98875 * 179.72112 * 17 16 14 30 30 H 1.08994 * 109.50731 * 297.54137 * 20 19 18 31 31 H 1.09004 * 109.50781 * 57.67739 * 20 19 18 32 32 H 1.09000 * 109.50732 * 296.91027 * 21 20 19 33 33 H 1.09007 * 109.50172 * 176.78380 * 21 20 19 34 34 H 1.09001 * 109.50427 * 298.73794 * 23 22 21 35 35 H 1.08998 * 109.53779 * 178.63068 * 23 22 21 36 36 H 1.09006 * 109.50254 * 302.32811 * 24 19 18 37 37 H 1.08999 * 109.50697 * 62.45244 * 24 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3063 0.0000 0.0000 3 14 2.2403 1.6177 0.0000 4 1 2.3823 2.1074 -1.3948 5 1 1.4945 2.6199 0.8030 6 1 3.5867 1.4119 0.5918 7 6 2.0070 -1.2137 0.0005 8 1 3.0838 -1.2156 -0.0817 9 6 1.3026 -2.4384 0.1089 10 8 0.0847 -2.4424 0.1091 11 7 1.9804 -3.5987 0.2120 12 6 1.2903 -4.8106 0.2245 13 6 0.0432 -4.8964 0.8306 14 6 -0.6380 -6.0983 0.8408 15 35 -2.3352 -6.2123 1.6671 16 6 -0.0845 -7.2191 0.2431 17 6 1.1577 -7.1456 -0.3572 18 6 1.8509 -5.9437 -0.3734 19 7 3.1038 -5.8656 -0.9851 20 6 3.0032 -6.1305 -2.4277 21 6 4.3858 -5.9763 -3.0670 22 8 5.3066 -6.8571 -2.4177 23 6 5.4297 -6.6266 -1.0116 24 6 4.0578 -6.7874 -0.3516 25 1 -0.4850 0.8401 -0.0004 26 1 2.9481 -3.5910 0.2773 27 1 -0.3934 -4.0240 1.2938 28 1 -0.6240 -8.1546 0.2505 29 1 1.5874 -8.0229 -0.8180 30 1 2.6398 -7.1457 -2.5868 31 1 2.3115 -5.4203 -2.8808 32 1 4.7260 -4.9469 -2.9547 33 1 4.3270 -6.2275 -4.1261 34 1 5.8003 -5.6160 -0.8396 35 1 6.1263 -7.3475 -0.5836 36 1 4.1358 -6.5567 0.7110 37 1 3.7112 -7.8131 -0.4774 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097096722.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:01:53 Heat of formation + Delta-G solvation = -38.192391 kcal Electronic energy + Delta-G solvation = -23504.380006 eV Core-core repulsion = 19907.173082 eV Total energy + Delta-G solvation = -3597.206923 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 354.037 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.34546 -38.78979 -37.21934 -35.43482 -33.61341 -32.45380 -31.21935 -31.19741 -29.46225 -28.77730 -26.68603 -25.71379 -24.00952 -22.81385 -21.57198 -20.12326 -19.85014 -17.66637 -17.19099 -16.19169 -16.15644 -15.69452 -15.16745 -15.11339 -15.01544 -14.93039 -14.17615 -13.90967 -13.71118 -13.25782 -12.96808 -12.60654 -12.48747 -12.27018 -11.68423 -11.56760 -11.43719 -11.36456 -11.26672 -11.15003 -10.68023 -10.57962 -10.37519 -10.36412 -9.92491 -9.76178 -9.35308 -8.92533 -8.46187 -8.29990 -7.72715 -7.16186 -6.41469 -4.93280 1.41838 1.80930 2.01847 3.02628 3.11046 3.14712 3.68839 3.86176 3.90988 3.97679 4.39044 4.62504 4.85948 4.94987 5.10391 5.14057 5.15402 5.23229 5.43859 5.52015 5.59700 5.62274 5.70747 5.78058 5.81083 5.93253 6.01418 6.22965 6.37192 6.59708 6.69871 6.87354 7.07306 7.11245 7.21840 7.41919 7.83415 7.99961 8.16123 8.77232 9.25308 10.33960 10.53894 Molecular weight = 354.04amu Principal moments of inertia in cm(-1) A = 0.006519 B = 0.005627 C = 0.003150 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 4293.825898 B = 4974.658976 C = 8886.432154 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.745 5.745 2 C 0.089 3.911 3 Si 0.911 3.089 4 H -0.271 1.271 5 H -0.277 1.277 6 H -0.262 1.262 7 C -0.534 4.534 8 H 0.071 0.929 9 C 0.542 3.458 10 O -0.567 6.567 11 N -0.683 5.683 12 C 0.229 3.771 13 C -0.100 4.100 14 C -0.065 4.065 15 Br -0.066 7.066 16 C -0.134 4.134 17 C -0.121 4.121 18 C 0.031 3.969 19 N -0.488 5.488 20 C 0.027 3.973 21 C 0.064 3.936 22 O -0.388 6.388 23 C 0.064 3.936 24 C 0.021 3.979 25 H 0.273 0.727 26 H 0.399 0.601 27 H 0.159 0.841 28 H 0.122 0.878 29 H 0.119 0.881 30 H 0.044 0.956 31 H 0.089 0.911 32 H 0.063 0.937 33 H 0.097 0.903 34 H 0.062 0.938 35 H 0.096 0.904 36 H 0.086 0.914 37 H 0.045 0.955 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.487 -13.375 -0.102 14.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.372 5.372 2 C -0.135 4.135 3 Si 0.735 3.265 4 H -0.196 1.196 5 H -0.202 1.202 6 H -0.186 1.186 7 C -0.569 4.569 8 H 0.089 0.911 9 C 0.351 3.649 10 O -0.451 6.451 11 N -0.324 5.324 12 C 0.125 3.875 13 C -0.123 4.123 14 C -0.145 4.145 15 Br 0.019 6.981 16 C -0.156 4.156 17 C -0.143 4.143 18 C -0.067 4.067 19 N -0.210 5.210 20 C -0.100 4.100 21 C -0.013 4.013 22 O -0.307 6.307 23 C -0.013 4.013 24 C -0.106 4.106 25 H 0.084 0.916 26 H 0.233 0.767 27 H 0.176 0.824 28 H 0.140 0.860 29 H 0.137 0.863 30 H 0.062 0.938 31 H 0.107 0.893 32 H 0.082 0.918 33 H 0.115 0.885 34 H 0.080 0.920 35 H 0.114 0.886 36 H 0.105 0.895 37 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 3.144 -12.813 0.141 13.194 hybrid contribution 0.743 0.172 -0.191 0.786 sum 3.887 -12.641 -0.050 13.225 Atomic orbital electron populations 1.70010 1.07282 1.27925 1.32020 1.25758 0.94623 1.00669 0.92425 0.86291 0.80359 0.80914 0.78919 1.19594 1.20166 1.18597 1.20006 0.94710 0.89994 1.52227 0.91119 1.17095 0.87558 0.82072 0.78158 1.90653 1.13545 1.85468 1.55444 1.44054 1.10082 1.03550 1.74761 1.17713 0.91899 0.86213 0.91660 1.21512 0.94799 0.96850 0.99183 1.21611 0.92780 0.96541 1.03559 1.96606 1.22665 1.98780 1.80004 1.20645 0.96175 0.97216 1.01557 1.21158 0.95096 0.97272 1.00726 1.18580 0.92409 0.93472 1.02210 1.59518 1.06900 1.51944 1.02631 1.22812 0.98638 1.00803 0.87770 1.22698 0.87608 0.94566 0.96425 1.87951 1.63278 1.58596 1.20869 1.22673 0.95567 1.01942 0.81122 1.22872 0.93118 0.94806 0.99807 0.91611 0.76651 0.82351 0.86043 0.86310 0.93787 0.89253 0.91832 0.88478 0.91994 0.88580 0.89533 0.93719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.75 -21.05 11.75 55.56 0.65 -20.40 16 2 C 0.09 2.32 5.49 -17.35 -0.10 2.23 16 3 Si 0.91 19.00 29.56 -169.99 -5.03 13.97 16 4 H -0.27 -5.55 7.11 56.52 0.40 -5.14 16 5 H -0.28 -5.67 7.11 56.52 0.40 -5.27 16 6 H -0.26 -5.29 7.11 56.52 0.40 -4.89 16 7 C -0.53 -14.16 9.31 -37.55 -0.35 -14.51 16 8 H 0.07 1.72 7.85 -52.49 -0.41 1.30 16 9 C 0.54 14.52 7.41 -14.94 -0.11 14.41 16 10 O -0.57 -17.11 12.30 5.11 0.06 -17.05 16 11 N -0.68 -14.93 5.14 -12.29 -0.06 -15.00 16 12 C 0.23 4.62 6.33 -83.53 -0.53 4.10 16 13 C -0.10 -2.10 8.42 -39.36 -0.33 -2.43 16 14 C -0.06 -1.16 6.22 -39.49 -0.25 -1.40 16 15 Br -0.07 -1.06 33.69 -68.01 -2.29 -3.35 16 16 C -0.13 -2.07 9.78 -39.49 -0.39 -2.45 16 17 C -0.12 -1.80 8.62 -39.42 -0.34 -2.14 16 18 C 0.03 0.52 4.76 -83.51 -0.40 0.12 16 19 N -0.49 -7.09 4.18 -170.57 -0.71 -7.80 16 20 C 0.03 0.36 5.40 -3.71 -0.02 0.34 16 21 C 0.06 0.75 7.01 37.21 0.26 1.01 16 22 O -0.39 -4.83 10.83 -35.23 -0.38 -5.21 16 23 C 0.06 0.69 7.01 37.20 0.26 0.95 16 24 C 0.02 0.25 5.36 -3.72 -0.02 0.23 16 25 H 0.27 6.98 8.29 -40.82 -0.34 6.64 16 26 H 0.40 7.83 8.46 -40.82 -0.35 7.49 16 27 H 0.16 3.85 6.19 -52.49 -0.33 3.53 16 28 H 0.12 1.59 8.06 -52.49 -0.42 1.17 16 29 H 0.12 1.50 7.04 -52.48 -0.37 1.14 16 30 H 0.04 0.56 7.41 -51.93 -0.38 0.18 16 31 H 0.09 1.31 8.14 -51.93 -0.42 0.89 16 32 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 33 H 0.10 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 35 H 0.10 0.82 8.14 -51.93 -0.42 0.39 16 36 H 0.09 1.00 8.14 -51.93 -0.42 0.58 16 37 H 0.04 0.52 7.21 -51.93 -0.37 0.15 16 LS Contribution 329.25 15.07 4.96 4.96 Total: -1.00 -30.78 329.25 -9.40 -40.18 By element: Atomic # 1 Polarization: 13.56 SS G_CDS: -4.30 Total: 9.26 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -2.30 Total: 0.44 kcal Atomic # 7 Polarization: -43.07 SS G_CDS: -0.12 Total: -43.19 kcal Atomic # 8 Polarization: -21.94 SS G_CDS: -0.32 Total: -22.26 kcal Atomic # 14 Polarization: 19.00 SS G_CDS: -5.03 Total: 13.97 kcal Atomic # 35 Polarization: -1.06 SS G_CDS: -2.29 Total: -3.35 kcal Total LS contribution 4.96 Total: 4.96 kcal Total: -30.78 -9.40 -40.18 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097096722.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.989 kcal (2) G-P(sol) polarization free energy of solvation -30.777 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.405 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.192 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds