Wall clock time and date at job start Tue Mar 31 2020 05:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47595 * 2 1 4 4 N 1.46900 * 109.47105 * 120.00318 * 2 1 3 5 5 C 1.48536 * 111.00015 * 59.87135 * 4 2 1 6 6 C 1.54937 * 103.22771 * 159.72418 * 5 4 2 7 7 C 1.54595 * 102.91944 * 322.58335 * 6 5 4 8 8 H 1.09004 * 110.31109 * 262.94259 * 7 6 5 9 9 N 1.46502 * 110.30867 * 140.87459 * 7 6 5 10 10 C 1.34778 * 120.00183 * 86.45216 * 9 7 6 11 11 O 1.21692 * 119.99712 * 0.02562 * 10 9 7 12 12 C 1.46375 * 120.00225 * 179.97438 * 10 9 7 13 13 H 1.08002 * 119.99885 * 345.52061 * 12 10 9 14 14 C 1.40043 * 119.99703 * 165.51642 * 12 10 9 15 15 N 1.30679 * 119.99518 * 155.37531 * 14 12 10 16 16 Si 1.86799 * 120.00505 * 335.37476 * 14 12 10 17 17 H 1.48501 * 109.46869 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47194 * 240.00062 * 16 14 12 19 19 H 1.48498 * 109.47298 * 119.99885 * 16 14 12 20 20 C 1.47902 * 111.00312 * 177.26933 * 4 2 1 21 21 H 1.09003 * 109.91250 * 333.50462 * 20 4 2 22 22 C 1.50697 * 109.91856 * 94.80129 * 20 4 2 23 23 C 1.38260 * 119.97463 * 37.31590 * 22 20 4 24 24 C 1.38217 * 120.05705 * 179.76913 * 23 22 20 25 25 C 1.38315 * 120.01407 * 0.50711 * 24 23 22 26 26 Cl 1.73606 * 120.02354 * 179.72545 * 25 24 23 27 27 C 1.38546 * 119.95326 * 359.74886 * 25 24 23 28 28 F 1.35100 * 120.03507 * 180.02562 * 27 25 24 29 29 C 1.38195 * 119.97144 * 217.59368 * 22 20 4 30 30 H 1.08999 * 109.47068 * 300.00077 * 1 2 3 31 31 H 1.09009 * 109.46896 * 59.99675 * 1 2 3 32 32 H 1.08993 * 109.47293 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47068 * 239.99923 * 2 1 3 34 34 H 1.09001 * 109.47499 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47353 * 300.00210 * 3 2 1 36 36 H 1.08999 * 109.46975 * 59.99866 * 3 2 1 37 37 H 1.08999 * 110.66943 * 41.28498 * 5 4 2 38 38 H 1.09007 * 110.80869 * 278.22265 * 5 4 2 39 39 H 1.09004 * 110.72442 * 204.22704 * 6 5 4 40 40 H 1.08997 * 110.87700 * 81.01295 * 6 5 4 41 41 H 0.97005 * 119.99890 * 266.45686 * 9 7 6 42 42 H 0.96997 * 120.00135 * 2.51254 * 15 14 12 43 43 H 1.08003 * 119.97360 * 0.02562 * 23 22 20 44 44 H 1.08005 * 119.99244 * 180.22864 * 24 23 22 45 45 H 1.08001 * 120.01140 * 359.95046 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.5408 -2.0982 1.2352 6 6 2.5330 -2.7860 2.2063 7 6 3.8785 -2.1055 1.8651 8 1 4.4505 -2.7238 1.1731 9 7 4.6503 -1.8639 3.0867 10 6 5.4535 -2.8281 3.5782 11 8 5.5380 -3.8993 3.0070 12 6 6.2250 -2.5865 4.7984 13 1 6.3393 -1.5806 5.1747 14 6 6.8148 -3.6596 5.4779 15 7 7.8574 -3.4571 6.2393 16 14 6.1112 -5.3805 5.2961 17 1 4.9390 -5.3422 4.3852 18 1 5.6872 -5.8851 6.6268 19 1 7.1477 -6.2820 4.7321 20 6 3.4967 -0.7696 1.2012 21 1 3.8710 -0.7432 0.1778 22 6 4.0697 0.3787 1.9913 23 6 3.4300 0.8168 3.1360 24 6 3.9566 1.8667 3.8646 25 6 5.1188 2.4870 3.4431 26 17 5.7766 3.8104 4.3541 27 6 5.7573 2.0519 2.2932 28 9 6.8929 2.6563 1.8803 29 6 5.2309 0.9966 1.5678 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 1.5971 -2.5491 0.2445 38 1 0.5236 -2.1510 1.6233 39 1 2.5825 -3.8575 2.0122 40 1 2.2565 -2.5957 3.2433 41 1 4.5831 -1.0099 3.5418 42 1 8.2006 -2.5583 6.3627 43 1 2.5203 0.3356 3.4636 44 1 3.4581 2.2057 4.7607 45 1 5.7280 0.6562 0.6714 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097097492.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:37 Heat of formation + Delta-G solvation = -63.771794 kcal Electronic energy + Delta-G solvation = -30590.207059 eV Core-core repulsion = 26354.524499 eV Total energy + Delta-G solvation = -4235.682560 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 354.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.92034 -40.62531 -38.41586 -37.47574 -36.53183 -34.81810 -32.84010 -32.27177 -31.67565 -30.64358 -28.59878 -28.04408 -26.92628 -25.62378 -23.17629 -22.99915 -21.55396 -20.76583 -20.07450 -19.34227 -18.06136 -17.55219 -16.71070 -16.46856 -16.07135 -15.76841 -15.66007 -15.30263 -14.83669 -14.39407 -14.08797 -13.85514 -13.75725 -13.44916 -13.32457 -13.10890 -12.95940 -12.76112 -12.58872 -12.55241 -12.32602 -12.06520 -11.99311 -11.72494 -11.67954 -11.42362 -11.20093 -11.09737 -11.00078 -10.92979 -10.89616 -10.73039 -10.51287 -10.00531 -9.33765 -8.97863 -8.81605 -8.61279 -8.52299 -7.92487 -7.72628 -7.00197 -4.81580 0.93222 1.08556 1.99474 3.37586 3.50993 3.56183 3.66946 4.00941 4.10056 4.26934 4.36772 4.50036 4.60320 4.66662 4.75684 4.77903 4.83934 5.04801 5.12752 5.17999 5.20539 5.25056 5.37021 5.46535 5.51058 5.53097 5.60609 5.63361 5.66975 5.71734 5.81290 5.87664 5.93172 5.95553 6.05192 6.06642 6.12545 6.27381 6.37899 6.45426 6.67361 6.83771 6.97347 7.62365 7.77292 7.83617 8.19926 8.90011 9.16815 10.20976 10.32623 Molecular weight = 354.13amu Principal moments of inertia in cm(-1) A = 0.007705 B = 0.005074 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3633.099262 B = 5517.358696 C = 8354.768522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.069 3.931 3 C -0.147 4.147 4 N -0.504 5.504 5 C 0.037 3.963 6 C -0.133 4.133 7 C 0.154 3.846 8 H 0.088 0.912 9 N -0.750 5.750 10 C 0.552 3.448 11 O -0.619 6.619 12 C -0.612 4.612 13 H 0.067 0.933 14 C 0.073 3.927 15 N -0.827 5.827 16 Si 1.084 2.916 17 H -0.251 1.251 18 H -0.308 1.308 19 H -0.287 1.287 20 C 0.096 3.904 21 H 0.069 0.931 22 C -0.019 4.019 23 C -0.092 4.092 24 C -0.083 4.083 25 C -0.076 4.076 26 Cl -0.058 7.058 27 C 0.111 3.889 28 F -0.130 7.130 29 C -0.138 4.138 30 H 0.064 0.936 31 H 0.057 0.943 32 H 0.055 0.945 33 H 0.042 0.958 34 H 0.056 0.944 35 H 0.055 0.945 36 H 0.064 0.936 37 H 0.045 0.955 38 H 0.084 0.916 39 H 0.076 0.924 40 H 0.079 0.921 41 H 0.387 0.613 42 H 0.280 0.720 43 H 0.148 0.852 44 H 0.142 0.858 45 H 0.140 0.860 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.848 11.968 -10.359 21.031 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.039 4.039 3 C -0.204 4.204 4 N -0.229 5.229 5 C -0.090 4.090 6 C -0.172 4.172 7 C 0.047 3.953 8 H 0.106 0.894 9 N -0.405 5.405 10 C 0.360 3.640 11 O -0.510 6.510 12 C -0.647 4.647 13 H 0.086 0.914 14 C -0.146 4.146 15 N -0.453 5.453 16 Si 0.912 3.088 17 H -0.175 1.175 18 H -0.238 1.238 19 H -0.213 1.213 20 C -0.013 4.013 21 H 0.087 0.913 22 C -0.020 4.020 23 C -0.111 4.111 24 C -0.102 4.102 25 C -0.104 4.104 26 Cl -0.030 7.030 27 C 0.091 3.909 28 F -0.108 7.108 29 C -0.158 4.158 30 H 0.083 0.917 31 H 0.076 0.924 32 H 0.074 0.926 33 H 0.059 0.941 34 H 0.075 0.925 35 H 0.074 0.926 36 H 0.083 0.917 37 H 0.064 0.936 38 H 0.102 0.898 39 H 0.095 0.905 40 H 0.098 0.902 41 H 0.223 0.777 42 H 0.091 0.909 43 H 0.166 0.834 44 H 0.160 0.840 45 H 0.158 0.842 Dipole moment (debyes) X Y Z Total from point charges -13.618 10.193 -9.794 19.628 hybrid contribution 0.595 2.112 -0.889 2.367 sum -13.023 12.305 -10.683 20.859 Atomic orbital electron populations 1.21830 0.94105 1.02007 1.02105 1.21801 0.95845 0.95354 0.90943 1.21918 1.01366 0.95156 1.01993 1.64649 1.05520 1.14920 1.37785 1.23215 0.99715 0.87361 0.98732 1.23005 0.94146 1.00022 1.00075 1.21340 0.92475 0.92079 0.89453 0.89427 1.46244 1.48296 1.19009 1.26913 1.18312 0.77912 0.81957 0.85827 1.90434 1.71573 1.26282 1.62742 1.21856 1.35401 0.96648 1.10834 0.91447 1.26876 0.90815 1.06335 0.90580 1.70602 1.15325 1.25839 1.33574 0.83332 0.78872 0.72318 0.74313 1.17546 1.23767 1.21299 1.21594 0.88708 0.93190 0.97805 0.91311 1.19418 0.93126 0.94473 0.95005 1.21081 1.00578 0.95599 0.93862 1.21002 0.93527 0.95522 1.00176 1.20957 0.98345 0.95996 0.95053 1.98373 1.85658 1.45561 1.73368 1.17264 0.84696 0.94763 0.94148 1.91526 1.47547 1.82022 1.89716 1.20915 0.97479 0.95645 1.01722 0.91714 0.92435 0.92575 0.94053 0.92455 0.92553 0.91697 0.93641 0.89758 0.90514 0.90212 0.77656 0.90927 0.83399 0.84017 0.84245 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.12 9.05 37.16 0.34 -0.78 16 2 C 0.07 0.64 2.36 -67.71 -0.16 0.48 16 3 C -0.15 -1.33 8.58 37.16 0.32 -1.02 16 4 N -0.50 -5.49 3.94 -216.03 -0.85 -6.34 16 5 C 0.04 0.41 5.41 -1.90 -0.01 0.40 16 6 C -0.13 -1.95 6.77 -24.87 -0.17 -2.12 16 7 C 0.15 2.56 3.27 -66.57 -0.22 2.34 16 8 H 0.09 1.62 7.64 -51.93 -0.40 1.23 16 9 N -0.75 -15.33 4.69 -53.89 -0.25 -15.58 16 10 C 0.55 14.38 7.26 -12.99 -0.09 14.28 16 11 O -0.62 -17.39 12.54 5.20 0.07 -17.33 16 12 C -0.61 -17.22 9.82 -35.63 -0.35 -17.57 16 13 H 0.07 1.92 8.06 -52.49 -0.42 1.50 16 14 C 0.07 2.10 5.48 -17.37 -0.10 2.01 16 15 N -0.83 -23.98 13.65 55.55 0.76 -23.22 16 16 Si 1.08 27.59 27.34 -169.99 -4.65 22.95 16 17 H -0.25 -6.51 5.81 56.52 0.33 -6.19 16 18 H -0.31 -7.42 7.11 56.52 0.40 -7.02 16 19 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 20 C 0.10 1.24 2.12 -67.80 -0.14 1.09 16 21 H 0.07 0.83 7.52 -51.93 -0.39 0.44 16 22 C -0.02 -0.25 1.78 -104.63 -0.19 -0.44 16 23 C -0.09 -1.16 7.62 -39.58 -0.30 -1.47 16 24 C -0.08 -1.03 9.83 -39.56 -0.39 -1.42 16 25 C -0.08 -1.05 6.33 -39.44 -0.25 -1.30 16 26 Cl -0.06 -0.77 28.62 -51.86 -1.48 -2.26 16 27 C 0.11 1.62 7.28 -39.39 -0.29 1.33 16 28 F -0.13 -1.98 16.84 2.25 0.04 -1.94 16 29 C -0.14 -1.89 9.12 -39.52 -0.36 -2.25 16 30 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 31 H 0.06 0.39 8.14 -51.92 -0.42 -0.03 16 32 H 0.06 0.43 6.93 -51.93 -0.36 0.07 16 33 H 0.04 0.39 7.99 -51.93 -0.41 -0.02 16 34 H 0.06 0.57 5.82 -51.93 -0.30 0.27 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.05 0.47 8.00 -51.93 -0.42 0.05 16 38 H 0.08 0.82 7.66 -51.93 -0.40 0.43 16 39 H 0.08 1.19 8.14 -51.93 -0.42 0.77 16 40 H 0.08 1.25 8.06 -51.93 -0.42 0.84 16 41 H 0.39 7.45 5.21 -40.82 -0.21 7.24 16 42 H 0.28 7.89 8.72 -40.82 -0.36 7.54 16 43 H 0.15 1.79 7.65 -52.48 -0.40 1.39 16 44 H 0.14 1.46 8.06 -52.48 -0.42 1.04 16 45 H 0.14 1.75 8.05 -52.49 -0.42 1.33 16 LS Contribution 375.78 15.07 5.66 5.66 Total: -1.00 -30.80 375.78 -9.38 -40.18 By element: Atomic # 1 Polarization: 10.61 SS G_CDS: -6.32 Total: 4.30 kcal Atomic # 6 Polarization: -4.06 SS G_CDS: -2.36 Total: -6.42 kcal Atomic # 7 Polarization: -44.79 SS G_CDS: -0.35 Total: -45.14 kcal Atomic # 8 Polarization: -17.39 SS G_CDS: 0.07 Total: -17.33 kcal Atomic # 9 Polarization: -1.98 SS G_CDS: 0.04 Total: -1.94 kcal Atomic # 14 Polarization: 27.59 SS G_CDS: -4.65 Total: 22.95 kcal Atomic # 17 Polarization: -0.77 SS G_CDS: -1.48 Total: -2.26 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -30.80 -9.38 -40.18 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097492.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.588 kcal (2) G-P(sol) polarization free energy of solvation -30.800 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -54.387 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.384 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.184 kcal (6) G-S(sol) free energy of system = (1) + (5) -63.772 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.72 seconds