Wall clock time and date at job start Tue Mar 31 2020 05:23:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52998 * 109.47595 * 2 1 4 4 N 1.46900 * 109.47105 * 120.00318 * 2 1 3 5 5 C 1.48536 * 111.00015 * 59.87135 * 4 2 1 6 6 C 1.54937 * 103.22771 * 159.72418 * 5 4 2 7 7 C 1.54595 * 102.91944 * 322.58335 * 6 5 4 8 8 H 1.09004 * 110.31109 * 262.94259 * 7 6 5 9 9 N 1.46502 * 110.30867 * 140.87459 * 7 6 5 10 10 C 1.34778 * 120.00183 * 86.45216 * 9 7 6 11 11 O 1.21692 * 119.99712 * 0.02562 * 10 9 7 12 12 C 1.46375 * 120.00225 * 179.97438 * 10 9 7 13 13 H 1.08002 * 119.99885 * 345.52061 * 12 10 9 14 14 C 1.40043 * 119.99703 * 165.51642 * 12 10 9 15 15 N 1.30679 * 119.99518 * 155.37531 * 14 12 10 16 16 Si 1.86799 * 120.00505 * 335.37476 * 14 12 10 17 17 H 1.48501 * 109.46869 * 359.97438 * 16 14 12 18 18 H 1.48502 * 109.47194 * 240.00062 * 16 14 12 19 19 H 1.48498 * 109.47298 * 119.99885 * 16 14 12 20 20 C 1.47902 * 111.00312 * 177.26933 * 4 2 1 21 21 H 1.09003 * 109.91250 * 333.50462 * 20 4 2 22 22 C 1.50697 * 109.91856 * 94.80129 * 20 4 2 23 23 C 1.38260 * 119.97463 * 37.31590 * 22 20 4 24 24 C 1.38217 * 120.05705 * 179.76913 * 23 22 20 25 25 C 1.38315 * 120.01407 * 0.50711 * 24 23 22 26 26 Cl 1.73606 * 120.02354 * 179.72545 * 25 24 23 27 27 C 1.38546 * 119.95326 * 359.74886 * 25 24 23 28 28 F 1.35100 * 120.03507 * 180.02562 * 27 25 24 29 29 C 1.38195 * 119.97144 * 217.59368 * 22 20 4 30 30 H 1.08999 * 109.47068 * 300.00077 * 1 2 3 31 31 H 1.09009 * 109.46896 * 59.99675 * 1 2 3 32 32 H 1.08993 * 109.47293 * 179.97438 * 1 2 3 33 33 H 1.08999 * 109.47068 * 239.99923 * 2 1 3 34 34 H 1.09001 * 109.47499 * 180.02562 * 3 2 1 35 35 H 1.09000 * 109.47353 * 300.00210 * 3 2 1 36 36 H 1.08999 * 109.46975 * 59.99866 * 3 2 1 37 37 H 1.08999 * 110.66943 * 41.28498 * 5 4 2 38 38 H 1.09007 * 110.80869 * 278.22265 * 5 4 2 39 39 H 1.09004 * 110.72442 * 204.22704 * 6 5 4 40 40 H 1.08997 * 110.87700 * 81.01295 * 6 5 4 41 41 H 0.97005 * 119.99890 * 266.45686 * 9 7 6 42 42 H 0.96997 * 120.00135 * 2.51254 * 15 14 12 43 43 H 1.08003 * 119.97360 * 0.02562 * 23 22 20 44 44 H 1.08005 * 119.99244 * 180.22864 * 24 23 22 45 45 H 1.08001 * 120.01140 * 359.95046 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 7 2.0197 -0.6926 1.1994 5 6 1.5408 -2.0982 1.2352 6 6 2.5330 -2.7860 2.2063 7 6 3.8785 -2.1055 1.8651 8 1 4.4505 -2.7238 1.1731 9 7 4.6503 -1.8639 3.0867 10 6 5.4535 -2.8281 3.5782 11 8 5.5380 -3.8993 3.0070 12 6 6.2250 -2.5865 4.7984 13 1 6.3393 -1.5806 5.1747 14 6 6.8148 -3.6596 5.4779 15 7 7.8574 -3.4571 6.2393 16 14 6.1112 -5.3805 5.2961 17 1 4.9390 -5.3422 4.3852 18 1 5.6872 -5.8851 6.6268 19 1 7.1477 -6.2820 4.7321 20 6 3.4967 -0.7696 1.2012 21 1 3.8710 -0.7432 0.1778 22 6 4.0697 0.3787 1.9913 23 6 3.4300 0.8168 3.1360 24 6 3.9566 1.8667 3.8646 25 6 5.1188 2.4870 3.4431 26 17 5.7766 3.8104 4.3541 27 6 5.7573 2.0519 2.2932 28 9 6.8929 2.6563 1.8803 29 6 5.2309 0.9966 1.5678 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3633 -1.0276 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 1.5971 -2.5491 0.2445 38 1 0.5236 -2.1510 1.6233 39 1 2.5825 -3.8575 2.0122 40 1 2.2565 -2.5957 3.2433 41 1 4.5831 -1.0099 3.5418 42 1 8.2006 -2.5583 6.3627 43 1 2.5203 0.3356 3.4636 44 1 3.4581 2.2057 4.7607 45 1 5.7280 0.6562 0.6714 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097097492.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:36 Heat of formation + Delta-G solvation = -81.927338 kcal Electronic energy + Delta-G solvation = -30590.994342 eV Core-core repulsion = 26354.524499 eV Total energy + Delta-G solvation = -4236.469843 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 354.125 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -50.07524 -41.74840 -39.60412 -39.16467 -37.59117 -36.06923 -34.99588 -33.55662 -32.88507 -31.70842 -29.77385 -29.15316 -28.02432 -27.23885 -24.24869 -24.08978 -22.57694 -22.27384 -21.17157 -20.69590 -20.09296 -18.68782 -17.88491 -17.56357 -17.38488 -16.99378 -16.85228 -16.71291 -16.18635 -15.80222 -15.36742 -15.15069 -14.98310 -14.91852 -14.62331 -14.34559 -14.26677 -14.04712 -13.88632 -13.78246 -13.50871 -13.04871 -12.91587 -12.88567 -12.83581 -12.73968 -12.57978 -12.14843 -12.11498 -12.04043 -12.01097 -11.86592 -11.72498 -11.65233 -11.36257 -10.99335 -10.04283 -10.02220 -9.62056 -9.58064 -9.44241 -9.19870 -7.03042 -0.14458 0.02597 0.92707 1.45793 1.51013 1.97942 2.18174 2.32446 2.44078 2.70701 2.88611 3.08481 3.31236 3.52742 3.58849 3.66021 3.87956 4.02001 4.08563 4.16095 4.20317 4.27020 4.30888 4.40110 4.47877 4.51416 4.68691 4.76224 4.84997 4.87030 4.90774 5.00998 5.01220 5.05355 5.07791 5.08256 5.22399 5.31720 5.39750 5.45659 5.54846 5.60455 5.64096 5.86649 5.96515 6.11904 6.14730 6.71685 7.25004 8.10315 8.16311 Molecular weight = 354.13amu Principal moments of inertia in cm(-1) A = 0.007705 B = 0.005074 C = 0.003351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3633.099262 B = 5517.358696 C = 8354.768522 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C 0.068 3.932 3 C -0.144 4.144 4 N -0.501 5.501 5 C 0.050 3.950 6 C -0.131 4.131 7 C 0.145 3.855 8 H 0.067 0.933 9 N -0.737 5.737 10 C 0.554 3.446 11 O -0.641 6.641 12 C -0.632 4.632 13 H 0.054 0.946 14 C 0.039 3.961 15 N -0.845 5.845 16 Si 1.119 2.881 17 H -0.261 1.261 18 H -0.285 1.285 19 H -0.287 1.287 20 C 0.109 3.891 21 H 0.079 0.921 22 C -0.024 4.024 23 C -0.090 4.090 24 C -0.080 4.080 25 C -0.085 4.085 26 Cl -0.057 7.057 27 C 0.093 3.907 28 F -0.139 7.139 29 C -0.144 4.144 30 H 0.061 0.939 31 H 0.070 0.930 32 H 0.060 0.940 33 H 0.045 0.955 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.059 0.941 37 H 0.058 0.942 38 H 0.105 0.895 39 H 0.064 0.936 40 H 0.070 0.930 41 H 0.393 0.607 42 H 0.275 0.725 43 H 0.158 0.842 44 H 0.164 0.836 45 H 0.146 0.854 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.259 12.264 -11.302 23.291 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.040 4.040 3 C -0.201 4.201 4 N -0.226 5.226 5 C -0.078 4.078 6 C -0.170 4.170 7 C 0.038 3.962 8 H 0.085 0.915 9 N -0.390 5.390 10 C 0.359 3.641 11 O -0.534 6.534 12 C -0.668 4.668 13 H 0.072 0.928 14 C -0.177 4.177 15 N -0.472 5.472 16 Si 0.943 3.057 17 H -0.186 1.186 18 H -0.213 1.213 19 H -0.213 1.213 20 C 0.000 4.000 21 H 0.097 0.903 22 C -0.025 4.025 23 C -0.109 4.109 24 C -0.099 4.099 25 C -0.112 4.112 26 Cl -0.028 7.028 27 C 0.073 3.927 28 F -0.117 7.117 29 C -0.163 4.163 30 H 0.080 0.920 31 H 0.089 0.911 32 H 0.079 0.921 33 H 0.063 0.937 34 H 0.064 0.936 35 H 0.089 0.911 36 H 0.078 0.922 37 H 0.076 0.924 38 H 0.123 0.877 39 H 0.083 0.917 40 H 0.088 0.912 41 H 0.231 0.769 42 H 0.086 0.914 43 H 0.175 0.825 44 H 0.182 0.818 45 H 0.164 0.836 Dipole moment (debyes) X Y Z Total from point charges -16.052 10.532 -10.739 21.998 hybrid contribution 1.319 2.112 -0.652 2.574 sum -14.733 12.643 -11.392 22.509 Atomic orbital electron populations 1.21800 0.92596 1.02510 1.02674 1.21896 0.96945 0.95075 0.90078 1.21891 1.00571 0.95201 1.02479 1.64697 1.03827 1.14978 1.39111 1.23176 0.99469 0.86787 0.98330 1.22907 0.93949 0.99572 1.00610 1.21556 0.92648 0.94451 0.87499 0.91491 1.45981 1.47212 1.17995 1.27846 1.18100 0.78222 0.82503 0.85275 1.90415 1.72242 1.27386 1.63333 1.22008 1.36669 0.96069 1.12061 0.92802 1.27792 0.90750 1.08851 0.90299 1.70645 1.16146 1.25639 1.34762 0.82884 0.77925 0.69822 0.75081 1.18601 1.21328 1.21336 1.21390 0.90262 0.90699 0.97659 0.90325 1.19487 0.93057 0.94618 0.95349 1.21234 1.00716 0.95442 0.93516 1.21268 0.92936 0.94996 1.00677 1.21135 0.98809 0.96296 0.95003 1.98370 1.85724 1.45449 1.73219 1.17488 0.84873 0.95455 0.94915 1.91497 1.48073 1.82251 1.89889 1.21051 0.97703 0.95523 1.02020 0.91961 0.91115 0.92095 0.93688 0.93635 0.91106 0.92205 0.92379 0.87664 0.91692 0.91172 0.76877 0.91408 0.82462 0.81816 0.83590 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.05 71.98 0.65 -1.01 16 2 C 0.07 1.04 2.36 44.91 0.11 1.15 16 3 C -0.14 -2.25 8.58 71.98 0.62 -1.63 16 4 N -0.50 -9.56 3.94 -837.39 -3.30 -12.86 16 5 C 0.05 0.95 5.41 86.65 0.47 1.41 16 6 C -0.13 -3.67 6.77 31.80 0.22 -3.45 16 7 C 0.14 4.69 3.27 45.87 0.15 4.84 16 8 H 0.07 2.47 7.64 -2.38 -0.02 2.45 16 9 N -0.74 -29.89 4.69 -442.64 -2.08 -31.96 16 10 C 0.55 28.96 7.26 86.36 0.63 29.59 16 11 O -0.64 -36.12 12.54 -4.32 -0.05 -36.18 16 12 C -0.63 -36.03 9.82 24.83 0.24 -35.78 16 13 H 0.05 3.14 8.06 -2.91 -0.02 3.11 16 14 C 0.04 2.22 5.48 85.30 0.47 2.69 16 15 N -0.84 -49.44 13.65 21.83 0.30 -49.14 16 16 Si 1.12 55.83 27.34 68.60 1.88 57.71 16 17 H -0.26 -13.37 5.81 99.48 0.58 -12.79 16 18 H -0.29 -13.04 7.11 99.48 0.71 -12.34 16 19 H -0.29 -14.24 7.11 99.48 0.71 -13.53 16 20 C 0.11 2.62 2.12 44.31 0.09 2.71 16 21 H 0.08 1.76 7.52 -2.39 -0.02 1.74 16 22 C -0.02 -0.60 1.78 -19.87 -0.04 -0.63 16 23 C -0.09 -2.13 7.62 22.27 0.17 -1.96 16 24 C -0.08 -1.87 9.83 22.28 0.22 -1.65 16 25 C -0.08 -2.28 6.33 22.36 0.14 -2.14 16 26 Cl -0.06 -1.46 28.62 -2.72 -0.08 -1.54 16 27 C 0.09 2.67 7.28 22.39 0.16 2.84 16 28 F -0.14 -4.26 16.84 44.97 0.76 -3.50 16 29 C -0.14 -3.85 9.12 22.31 0.20 -3.64 16 30 H 0.06 0.80 8.14 -2.39 -0.02 0.78 16 31 H 0.07 0.69 8.14 -2.38 -0.02 0.67 16 32 H 0.06 0.69 6.93 -2.39 -0.02 0.67 16 33 H 0.05 0.69 7.99 -2.39 -0.02 0.68 16 34 H 0.04 0.82 5.82 -2.39 -0.01 0.81 16 35 H 0.07 0.90 8.14 -2.39 -0.02 0.88 16 36 H 0.06 1.00 8.14 -2.39 -0.02 0.98 16 37 H 0.06 1.00 8.00 -2.39 -0.02 0.98 16 38 H 0.11 1.65 7.66 -2.38 -0.02 1.63 16 39 H 0.06 1.97 8.14 -2.38 -0.02 1.95 16 40 H 0.07 2.11 8.06 -2.39 -0.02 2.09 16 41 H 0.39 14.94 5.21 -92.70 -0.48 14.46 16 42 H 0.28 15.85 8.72 -92.71 -0.81 15.04 16 43 H 0.16 3.43 7.65 -2.91 -0.02 3.41 16 44 H 0.16 3.02 8.06 -2.91 -0.02 3.00 16 45 H 0.15 3.61 8.05 -2.91 -0.02 3.58 16 Total: -1.00 -66.18 375.78 2.29 -63.88 By element: Atomic # 1 Polarization: 19.88 SS G_CDS: 0.37 Total: 20.25 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 4.50 Total: -6.66 kcal Atomic # 7 Polarization: -88.88 SS G_CDS: -5.08 Total: -93.96 kcal Atomic # 8 Polarization: -36.12 SS G_CDS: -0.05 Total: -36.18 kcal Atomic # 9 Polarization: -4.26 SS G_CDS: 0.76 Total: -3.50 kcal Atomic # 14 Polarization: 55.83 SS G_CDS: 1.88 Total: 57.71 kcal Atomic # 17 Polarization: -1.46 SS G_CDS: -0.08 Total: -1.54 kcal Total: -66.18 2.29 -63.88 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097492.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -18.045 kcal (2) G-P(sol) polarization free energy of solvation -66.177 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.222 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.882 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds