Wall clock time and date at job start Tue Mar 31 2020 05:23:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52997 * 109.47330 * 2 1 4 4 N 1.46904 * 109.46917 * 119.99816 * 2 1 3 5 5 C 1.48564 * 110.99791 * 64.58006 * 4 2 1 6 6 C 1.54614 * 104.59017 * 159.09860 * 5 4 2 7 7 C 1.54251 * 104.95086 * 336.06752 * 6 5 4 8 8 H 1.09001 * 110.32611 * 119.02754 * 7 6 5 9 9 N 1.46503 * 110.32830 * 241.13528 * 7 6 5 10 10 C 1.34784 * 119.99772 * 272.17265 * 9 7 6 11 11 O 1.21691 * 119.99695 * 359.97438 * 10 9 7 12 12 C 1.46372 * 119.99798 * 179.97438 * 10 9 7 13 13 H 1.07994 * 120.00277 * 8.47385 * 12 10 9 14 14 C 1.40052 * 119.99588 * 188.47310 * 12 10 9 15 15 N 1.30675 * 119.99723 * 192.79146 * 14 12 10 16 16 Si 1.86798 * 120.00426 * 12.78800 * 14 12 10 17 17 H 1.48508 * 109.46966 * 270.00203 * 16 14 12 18 18 H 1.48497 * 109.47451 * 150.00117 * 16 14 12 19 19 H 1.48500 * 109.47029 * 29.99998 * 16 14 12 20 20 C 1.48550 * 110.99932 * 180.02562 * 4 2 1 21 21 H 1.09001 * 110.51528 * 319.79019 * 20 4 2 22 22 C 1.50701 * 110.41472 * 82.18001 * 20 4 2 23 23 C 1.38270 * 119.97263 * 34.89558 * 22 20 4 24 24 C 1.38214 * 120.06091 * 179.76930 * 23 22 20 25 25 C 1.38321 * 120.01364 * 0.50392 * 24 23 22 26 26 Cl 1.73592 * 120.02824 * 179.76807 * 25 24 23 27 27 C 1.38555 * 119.94882 * 359.75409 * 25 24 23 28 28 F 1.35098 * 120.03296 * 180.02562 * 27 25 24 29 29 C 1.38187 * 119.97787 * 215.16970 * 22 20 4 30 30 H 1.09001 * 109.47312 * 180.02562 * 1 2 3 31 31 H 1.08992 * 109.47178 * 300.00200 * 1 2 3 32 32 H 1.09004 * 109.47022 * 60.00167 * 1 2 3 33 33 H 1.08999 * 109.46934 * 239.99485 * 2 1 3 34 34 H 1.08996 * 109.47632 * 179.97438 * 3 2 1 35 35 H 1.09004 * 109.46932 * 299.99888 * 3 2 1 36 36 H 1.08998 * 109.46987 * 59.99082 * 3 2 1 37 37 H 1.09000 * 110.40988 * 277.81767 * 5 4 2 38 38 H 1.08995 * 110.41158 * 40.14750 * 5 4 2 39 39 H 1.09002 * 110.35115 * 217.22063 * 6 5 4 40 40 H 1.09004 * 110.40214 * 94.94171 * 6 5 4 41 41 H 0.96999 * 120.00178 * 92.16760 * 9 7 6 42 42 H 0.96996 * 119.99737 * 354.70541 * 15 14 12 43 43 H 1.08006 * 119.96672 * 0.02562 * 23 22 20 44 44 H 1.08002 * 119.99549 * 180.23674 * 24 23 22 45 45 H 1.07998 * 120.00629 * 359.95885 * 29 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 7 2.0196 -0.6925 1.1995 5 6 1.6358 -2.1275 1.1797 6 6 2.6274 -2.8094 2.1505 7 6 3.8562 -1.8776 2.1835 8 1 4.0220 -1.5053 3.1945 9 7 5.0449 -2.5857 1.7017 10 6 5.8015 -3.2953 2.5622 11 8 5.4976 -3.3474 3.7394 12 6 6.9888 -4.0031 2.0808 13 1 7.3370 -3.8484 1.0703 14 6 7.6732 -4.8811 2.9306 15 7 8.8593 -5.3187 2.6000 16 14 6.8906 -5.4267 4.5366 17 1 7.2681 -4.4809 5.6176 18 1 7.3683 -6.7896 4.8822 19 1 5.4133 -5.4431 4.3869 20 6 3.5046 -0.7118 1.2342 21 1 3.9076 -0.8977 0.2386 22 6 4.0346 0.5891 1.7798 23 6 3.3401 1.2561 2.7722 24 6 3.8270 2.4469 3.2773 25 6 5.0047 2.9781 2.7830 26 17 5.6134 4.4768 3.4130 27 6 5.6982 2.3129 1.7849 28 9 6.8488 2.8300 1.3013 29 6 5.2114 1.1175 1.2841 30 1 -0.3634 -1.0277 0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5138 -0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 3.1300 1.4425 0.0005 35 1 1.6767 1.9563 -0.8900 36 1 1.6766 1.9563 0.8899 37 1 0.6123 -2.2521 1.5335 38 1 1.7422 -2.5357 0.1747 39 1 2.9085 -3.7936 1.7758 40 1 2.1888 -2.8930 3.1449 41 1 5.2873 -2.5438 0.7634 42 1 9.2335 -5.0976 1.7328 43 1 2.4185 0.8439 3.1558 44 1 3.2857 2.9650 4.0551 45 1 5.7513 0.5979 0.5064 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097097494.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:23:40 Heat of formation + Delta-G solvation = -71.961615 kcal Electronic energy + Delta-G solvation = -30160.334532 eV Core-core repulsion = 25924.296835 eV Total energy + Delta-G solvation = -4236.037697 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 354.125 amu Computer time = 0.72 seconds Orbital eigenvalues (eV) -48.98326 -40.56719 -38.56046 -37.59146 -36.61190 -34.88396 -32.89973 -32.24848 -31.98600 -30.75124 -28.74578 -27.83172 -27.02191 -25.69784 -23.19923 -23.08999 -21.65950 -20.76671 -20.12682 -19.44601 -18.13068 -17.63906 -16.77435 -16.51365 -16.12225 -15.90978 -15.71774 -15.42596 -14.61982 -14.33093 -14.26272 -14.02135 -13.77580 -13.67518 -13.32006 -13.10516 -13.03046 -12.76733 -12.65846 -12.62957 -12.39568 -12.10471 -12.07719 -11.96469 -11.70729 -11.53287 -11.24434 -11.13404 -11.04254 -11.00234 -10.88312 -10.62031 -10.49066 -10.06465 -9.31175 -9.04067 -8.93479 -8.72697 -8.60559 -8.01974 -7.89552 -7.02140 -4.93719 0.84805 1.01456 1.89930 3.30229 3.54816 3.56109 3.65030 4.01839 4.04138 4.25778 4.42615 4.46523 4.54968 4.60754 4.66738 4.77008 4.82482 4.97904 5.09229 5.14330 5.18146 5.21623 5.24900 5.44758 5.46321 5.49381 5.55587 5.58703 5.64243 5.69550 5.73800 5.83643 5.87897 5.96884 5.99923 6.03197 6.11669 6.29243 6.34903 6.40268 6.60583 6.72094 6.91474 7.45554 7.65196 7.73443 8.08225 8.82157 9.02021 10.05390 10.30746 Molecular weight = 354.13amu Principal moments of inertia in cm(-1) A = 0.008470 B = 0.004074 C = 0.003071 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3304.929917 B = 6870.994469 C = 9115.224494 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.067 3.933 3 C -0.152 4.152 4 N -0.497 5.497 5 C 0.036 3.964 6 C -0.135 4.135 7 C 0.162 3.838 8 H 0.093 0.907 9 N -0.750 5.750 10 C 0.554 3.446 11 O -0.614 6.614 12 C -0.601 4.601 13 H 0.068 0.932 14 C 0.063 3.937 15 N -0.832 5.832 16 Si 1.121 2.879 17 H -0.288 1.288 18 H -0.321 1.321 19 H -0.275 1.275 20 C 0.093 3.907 21 H 0.068 0.932 22 C -0.020 4.020 23 C -0.090 4.090 24 C -0.086 4.086 25 C -0.078 4.078 26 Cl -0.059 7.059 27 C 0.110 3.890 28 F -0.129 7.129 29 C -0.139 4.139 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.057 0.943 33 H 0.042 0.958 34 H 0.061 0.939 35 H 0.055 0.945 36 H 0.066 0.934 37 H 0.083 0.917 38 H 0.044 0.956 39 H 0.078 0.922 40 H 0.075 0.925 41 H 0.384 0.616 42 H 0.278 0.722 43 H 0.149 0.851 44 H 0.141 0.859 45 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.528 14.975 -5.925 22.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.042 4.042 3 C -0.210 4.210 4 N -0.222 5.222 5 C -0.092 4.092 6 C -0.174 4.174 7 C 0.055 3.945 8 H 0.111 0.889 9 N -0.402 5.402 10 C 0.362 3.638 11 O -0.506 6.506 12 C -0.637 4.637 13 H 0.087 0.913 14 C -0.154 4.154 15 N -0.460 5.460 16 Si 0.953 3.047 17 H -0.215 1.215 18 H -0.252 1.252 19 H -0.202 1.202 20 C -0.016 4.016 21 H 0.086 0.914 22 C -0.021 4.021 23 C -0.108 4.108 24 C -0.105 4.105 25 C -0.106 4.106 26 Cl -0.031 7.031 27 C 0.090 3.910 28 F -0.107 7.107 29 C -0.158 4.158 30 H 0.074 0.926 31 H 0.083 0.917 32 H 0.076 0.924 33 H 0.060 0.940 34 H 0.080 0.920 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.101 0.899 38 H 0.062 0.938 39 H 0.096 0.904 40 H 0.094 0.906 41 H 0.217 0.783 42 H 0.089 0.911 43 H 0.167 0.833 44 H 0.159 0.841 45 H 0.159 0.841 Dipole moment (debyes) X Y Z Total from point charges -15.560 14.547 -3.358 21.564 hybrid contribution 0.675 0.886 -2.972 3.173 sum -14.885 15.434 -6.329 22.357 Atomic orbital electron populations 1.21803 0.94005 1.01996 1.02097 1.21808 0.95974 0.95366 0.91027 1.22116 1.01623 0.95128 1.02089 1.65298 1.06762 1.12646 1.37457 1.23160 1.00111 0.87149 0.98780 1.22867 0.95216 0.99459 0.99866 1.21275 0.86190 0.89124 0.97945 0.88859 1.45902 1.27619 1.55291 1.11350 1.18356 0.82656 0.78247 0.84538 1.90231 1.75269 1.67299 1.17849 1.21990 1.11215 1.28384 1.02083 0.91348 1.27086 0.92494 0.91039 1.04831 1.70627 1.12847 1.40414 1.22070 0.82606 0.76053 0.73184 0.72895 1.21462 1.25204 1.20152 1.21786 0.88935 0.92201 0.98658 0.91446 1.19450 0.92980 0.94742 0.94955 1.21090 1.00535 0.93565 0.95625 1.20977 0.93637 0.96238 0.99664 1.20967 0.98218 0.91625 0.99789 1.98372 1.87552 1.31106 1.86026 1.17273 0.84182 0.93876 0.95692 1.91533 1.46261 1.86284 1.86662 1.20959 0.97599 0.94452 1.02795 0.92628 0.91707 0.92406 0.94011 0.92045 0.92592 0.91537 0.89885 0.93751 0.90373 0.90590 0.78331 0.91132 0.83348 0.84120 0.84053 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.10 9.15 37.16 0.34 -0.76 16 2 C 0.07 0.62 2.44 -67.71 -0.17 0.45 16 3 C -0.15 -1.38 7.93 37.16 0.29 -1.08 16 4 N -0.50 -5.34 4.07 -215.43 -0.88 -6.22 16 5 C 0.04 0.39 5.54 -2.05 -0.01 0.38 16 6 C -0.13 -1.96 6.80 -25.23 -0.17 -2.13 16 7 C 0.16 2.65 2.92 -66.54 -0.19 2.45 16 8 H 0.09 1.78 7.30 -51.93 -0.38 1.40 16 9 N -0.75 -14.70 5.03 -53.86 -0.27 -14.97 16 10 C 0.55 14.08 7.49 -12.99 -0.10 13.99 16 11 O -0.61 -17.07 11.89 5.20 0.06 -17.01 16 12 C -0.60 -16.53 9.92 -35.63 -0.35 -16.88 16 13 H 0.07 1.86 8.06 -52.49 -0.42 1.44 16 14 C 0.06 1.81 5.52 -17.36 -0.10 1.71 16 15 N -0.83 -23.89 13.64 55.55 0.76 -23.13 16 16 Si 1.12 29.13 26.39 -169.99 -4.49 24.65 16 17 H -0.29 -7.58 7.11 56.52 0.40 -7.18 16 18 H -0.32 -8.00 7.11 56.52 0.40 -7.60 16 19 H -0.28 -7.24 6.45 56.52 0.36 -6.88 16 20 C 0.09 1.17 1.90 -67.21 -0.13 1.05 16 21 H 0.07 0.83 7.50 -51.93 -0.39 0.45 16 22 C -0.02 -0.25 2.47 -104.63 -0.26 -0.51 16 23 C -0.09 -1.03 7.87 -39.58 -0.31 -1.34 16 24 C -0.09 -0.96 9.83 -39.56 -0.39 -1.34 16 25 C -0.08 -0.99 6.33 -39.43 -0.25 -1.24 16 26 Cl -0.06 -0.71 28.62 -51.86 -1.48 -2.20 16 27 C 0.11 1.51 7.28 -39.39 -0.29 1.23 16 28 F -0.13 -1.89 16.84 2.25 0.04 -1.86 16 29 C -0.14 -1.83 8.92 -39.52 -0.35 -2.18 16 30 H 0.05 0.43 7.06 -51.93 -0.37 0.06 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.04 0.40 7.97 -51.93 -0.41 -0.01 16 34 H 0.06 0.62 5.02 -51.93 -0.26 0.36 16 35 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 36 H 0.07 0.61 7.27 -51.93 -0.38 0.23 16 37 H 0.08 0.81 7.70 -51.93 -0.40 0.41 16 38 H 0.04 0.48 7.90 -51.93 -0.41 0.07 16 39 H 0.08 1.26 7.95 -51.93 -0.41 0.85 16 40 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 41 H 0.38 6.76 8.34 -40.82 -0.34 6.42 16 42 H 0.28 7.67 8.72 -40.82 -0.36 7.31 16 43 H 0.15 1.58 7.59 -52.48 -0.40 1.19 16 44 H 0.14 1.23 8.06 -52.49 -0.42 0.81 16 45 H 0.14 1.77 8.06 -52.49 -0.42 1.35 16 LS Contribution 376.51 15.07 5.67 5.67 Total: -1.00 -30.52 376.51 -9.31 -39.83 By element: Atomic # 1 Polarization: 7.75 SS G_CDS: -6.30 Total: 1.45 kcal Atomic # 6 Polarization: -3.79 SS G_CDS: -2.43 Total: -6.22 kcal Atomic # 7 Polarization: -43.93 SS G_CDS: -0.39 Total: -44.32 kcal Atomic # 8 Polarization: -17.07 SS G_CDS: 0.06 Total: -17.01 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.86 kcal Atomic # 14 Polarization: 29.13 SS G_CDS: -4.49 Total: 24.65 kcal Atomic # 17 Polarization: -0.71 SS G_CDS: -1.48 Total: -2.20 kcal Total LS contribution 5.67 Total: 5.67 kcal Total: -30.52 -9.31 -39.83 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097494.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -32.132 kcal (2) G-P(sol) polarization free energy of solvation -30.516 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.648 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.314 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.829 kcal (6) G-S(sol) free energy of system = (1) + (5) -71.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.73 seconds