Wall clock time and date at job start Tue Mar 31 2020 06:04:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.30614 * 1 3 3 Si 1.86803 * 120.00140 * 2 1 4 4 H 1.48497 * 109.47162 * 270.00048 * 3 2 1 5 5 H 1.48502 * 109.47052 * 29.99741 * 3 2 1 6 6 H 1.48500 * 109.47129 * 149.99825 * 3 2 1 7 7 C 1.40161 * 119.99955 * 179.97438 * 2 1 3 8 8 H 1.07997 * 119.99941 * 180.02562 * 7 2 1 9 9 C 1.41534 * 119.99780 * 359.97438 * 7 2 1 10 10 O 1.21813 * 120.00171 * 0.02562 * 9 7 2 11 11 N 1.34772 * 119.99684 * 179.97438 * 9 7 2 12 12 C 1.38595 * 120.00098 * 180.02562 * 11 9 7 13 13 C 1.36680 * 126.31086 * 0.16975 * 12 11 9 14 14 C 1.39465 * 107.83749 * 180.24433 * 13 12 11 15 15 N 1.30998 * 108.54090 * 359.76097 * 14 13 12 16 16 N 1.36052 * 126.32096 * 180.02562 * 12 11 9 17 17 C 1.46504 * 126.11507 * 0.02562 * 16 12 11 18 18 C 1.50706 * 109.46991 * 269.71509 * 17 16 12 19 19 C 1.38268 * 119.94321 * 90.00573 * 18 17 16 20 20 C 1.38139 * 120.05510 * 179.97438 * 19 18 17 21 21 C 1.38733 * 119.94507 * 359.97438 * 20 19 18 22 22 O 1.35905 * 120.05258 * 179.97438 * 21 20 19 23 23 C 1.42901 * 116.99604 * 180.02562 * 22 21 20 24 24 F 1.39902 * 109.46987 * 60.00144 * 23 22 21 25 25 F 1.39901 * 109.46966 * 179.97438 * 23 22 21 26 26 F 1.39904 * 109.47113 * 300.00000 * 23 22 21 27 27 C 1.38723 * 119.88799 * 0.25807 * 21 20 19 28 28 C 1.38145 * 119.94323 * 359.49123 * 27 21 20 29 29 H 0.97008 * 120.00039 * 0.02562 * 1 2 3 30 30 H 0.97004 * 120.00760 * 0.02562 * 11 9 7 31 31 H 1.08001 * 126.08181 * 0.02562 * 13 12 11 32 32 H 1.07996 * 125.72854 * 179.74151 * 14 13 12 33 33 H 1.09001 * 109.47156 * 149.71851 * 17 16 12 34 34 H 1.08994 * 109.47365 * 29.71576 * 17 16 12 35 35 H 1.08008 * 119.97007 * 359.94743 * 19 18 17 36 36 H 1.08001 * 120.02451 * 179.97438 * 20 19 18 37 37 H 1.08001 * 120.02769 * 179.72249 * 27 21 20 38 38 H 1.08006 * 119.97076 * 180.25587 * 28 27 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3061 0.0000 0.0000 3 14 2.2402 1.6177 0.0000 4 1 2.4877 2.0464 -1.4000 5 1 1.4376 2.6527 0.7000 6 1 3.5377 1.4401 0.7001 7 6 2.0069 -1.2138 0.0005 8 1 3.0869 -1.2138 0.0010 9 6 1.2992 -2.4395 0.0016 10 8 0.0811 -2.4395 0.0016 11 7 1.9731 -3.6067 0.0016 12 6 1.2801 -4.8070 0.0022 13 6 -0.0784 -4.9572 -0.0005 14 6 -0.3570 -6.3238 0.0069 15 7 0.7767 -6.9801 0.0086 16 7 1.8266 -6.0529 0.0027 17 6 3.2572 -6.3684 0.0034 18 6 3.7468 -6.4838 -1.4172 19 6 4.2291 -5.3667 -2.0739 20 6 4.6790 -5.4700 -3.3759 21 6 4.6471 -6.6960 -4.0244 22 8 5.0886 -6.8000 -5.3055 23 6 5.0256 -8.0932 -5.9104 24 9 3.6977 -8.5330 -5.9335 25 9 5.5151 -8.0202 -7.2190 26 9 5.8018 -8.9922 -5.1711 27 6 4.1582 -7.8143 -3.3650 28 6 3.7143 -7.7069 -2.0612 29 1 -0.4850 0.8401 -0.0004 30 1 2.9431 -3.6068 0.0013 31 1 -0.8065 -4.1596 -0.0039 32 1 -1.3421 -6.7665 0.0108 33 1 3.4208 -7.3131 0.5219 34 1 3.8040 -5.5750 0.5128 35 1 4.2538 -4.4125 -1.5686 36 1 5.0552 -4.5970 -3.8885 37 1 4.1281 -8.7689 -3.8692 38 1 3.3375 -8.5781 -1.5460 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097097723.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:00 Heat of formation + Delta-G solvation = -117.858723 kcal Electronic energy + Delta-G solvation = -30840.640906 eV Core-core repulsion = 25849.557276 eV Total energy + Delta-G solvation = -4991.083631 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 355.093 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -50.74951 -48.47478 -48.33784 -40.76419 -40.28988 -38.14857 -37.57093 -33.87785 -33.34254 -32.42794 -31.36266 -30.00366 -28.51157 -26.77445 -26.37285 -25.37276 -23.29455 -22.23538 -21.56330 -20.45456 -19.93786 -19.45996 -19.28211 -19.04833 -17.80473 -16.99623 -16.60333 -16.19524 -15.62771 -15.53183 -15.52402 -15.15263 -14.89259 -14.79564 -14.73735 -14.48423 -14.41974 -14.37614 -14.06535 -13.93089 -13.60317 -13.52095 -13.17322 -12.83247 -12.70476 -12.38183 -12.20747 -11.80899 -11.72372 -11.47171 -11.22840 -11.21186 -10.76944 -10.45869 -9.90159 -9.79626 -9.29663 -9.02941 -8.78797 -8.26878 -7.79204 -7.00003 -6.48065 -5.02597 0.85414 1.06302 1.18489 2.52505 2.59747 2.85195 2.99956 3.07341 3.10200 3.46162 3.46635 3.71210 3.71727 3.90330 4.34276 4.35310 4.39881 4.51773 4.58423 4.71250 4.96772 5.07191 5.27607 5.39142 5.60997 5.62309 5.72468 5.76426 5.92374 6.13244 6.17776 6.32382 6.49721 6.65969 7.02231 7.06677 7.15835 7.60244 7.68202 7.92252 8.10434 8.44965 8.69151 9.14193 10.26818 10.45888 Molecular weight = 355.09amu Principal moments of inertia in cm(-1) A = 0.011613 B = 0.002761 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2410.523895 B =10140.250369 C =11670.288869 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.743 5.743 2 C 0.089 3.911 3 Si 0.914 3.086 4 H -0.269 1.269 5 H -0.276 1.276 6 H -0.263 1.263 7 C -0.535 4.535 8 H 0.071 0.929 9 C 0.548 3.452 10 O -0.549 6.549 11 N -0.671 5.671 12 C 0.348 3.652 13 C -0.305 4.305 14 C 0.058 3.942 15 N -0.329 5.329 16 N -0.406 5.406 17 C 0.181 3.819 18 C -0.125 4.125 19 C -0.061 4.061 20 C -0.121 4.121 21 C 0.106 3.894 22 O -0.310 6.310 23 C 0.604 3.396 24 F -0.164 7.164 25 F -0.133 7.133 26 F -0.166 7.166 27 C -0.193 4.193 28 C -0.050 4.050 29 H 0.275 0.725 30 H 0.386 0.614 31 H 0.173 0.827 32 H 0.173 0.827 33 H 0.101 0.899 34 H 0.093 0.907 35 H 0.139 0.861 36 H 0.142 0.858 37 H 0.133 0.867 38 H 0.136 0.864 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.070 -13.481 -7.138 19.452 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.370 5.370 2 C -0.135 4.135 3 Si 0.738 3.262 4 H -0.194 1.194 5 H -0.201 1.201 6 H -0.187 1.187 7 C -0.571 4.571 8 H 0.089 0.911 9 C 0.357 3.643 10 O -0.430 6.430 11 N -0.318 5.318 12 C 0.126 3.874 13 C -0.338 4.338 14 C -0.127 4.127 15 N -0.151 5.151 16 N -0.196 5.196 17 C 0.059 3.941 18 C -0.126 4.126 19 C -0.079 4.079 20 C -0.140 4.140 21 C 0.064 3.936 22 O -0.230 6.230 23 C 0.513 3.487 24 F -0.146 7.146 25 F -0.114 7.114 26 F -0.148 7.148 27 C -0.212 4.212 28 C -0.068 4.068 29 H 0.086 0.914 30 H 0.218 0.782 31 H 0.190 0.810 32 H 0.190 0.810 33 H 0.119 0.881 34 H 0.111 0.889 35 H 0.157 0.843 36 H 0.160 0.840 37 H 0.151 0.849 38 H 0.154 0.846 Dipole moment (debyes) X Y Z Total from point charges 11.740 -14.314 -7.243 19.879 hybrid contribution 0.636 1.207 -0.313 1.400 sum 12.376 -13.106 -7.556 19.546 Atomic orbital electron populations 1.69985 1.07287 1.28170 1.31560 1.25741 0.94690 1.00687 0.92412 0.86248 0.80151 0.80629 0.79136 1.19429 1.20145 1.18659 1.19882 0.94296 0.89549 1.53332 0.91093 1.16993 0.87695 0.81182 0.78443 1.90601 1.13414 1.84771 1.54241 1.43860 1.08923 1.02946 1.76049 1.18651 0.91750 0.80252 0.96732 1.21785 0.93720 0.96736 1.21542 1.23594 0.96755 0.93543 0.98807 1.77244 0.93992 1.13655 1.30222 1.48678 1.04776 1.02581 1.63592 1.20238 0.77482 1.03761 0.92614 1.20238 1.01055 0.93820 0.97530 1.21003 0.95155 0.98526 0.93251 1.20408 1.03658 0.95078 0.94810 1.18733 0.98370 0.95896 0.80630 1.86420 1.80656 1.27478 1.28449 1.19355 0.74740 0.77982 0.76640 1.93318 1.35574 1.89525 1.96182 1.93305 1.87886 1.95820 1.34424 1.93299 1.75595 1.68811 1.77092 1.21467 1.04847 0.97550 0.97323 1.20849 0.95210 0.97713 0.93053 0.91404 0.78158 0.80966 0.81016 0.88051 0.88852 0.84343 0.84034 0.84919 0.84626 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.74 -20.45 11.72 55.56 0.65 -19.79 16 2 C 0.09 2.25 5.50 -17.35 -0.10 2.15 16 3 Si 0.91 18.32 29.56 -169.99 -5.02 13.29 16 4 H -0.27 -5.30 7.11 56.52 0.40 -4.90 16 5 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 6 H -0.26 -5.06 7.11 56.52 0.40 -4.66 16 7 C -0.54 -13.62 9.30 -37.60 -0.35 -13.97 16 8 H 0.07 1.60 7.85 -52.49 -0.41 1.19 16 9 C 0.55 14.37 7.52 -15.01 -0.11 14.25 16 10 O -0.55 -16.36 11.98 5.09 0.06 -16.30 16 11 N -0.67 -14.20 5.37 -13.99 -0.08 -14.27 16 12 C 0.35 7.29 7.68 -153.09 -1.18 6.11 16 13 C -0.31 -6.80 9.65 -39.69 -0.38 -7.18 16 14 C 0.06 1.09 11.99 -17.45 -0.21 0.88 16 15 N -0.33 -6.10 12.57 30.57 0.38 -5.72 16 16 N -0.41 -7.15 3.63 -61.46 -0.22 -7.38 16 17 C 0.18 2.33 6.40 -5.19 -0.03 2.29 16 18 C -0.12 -1.56 5.46 -104.60 -0.57 -2.13 16 19 C -0.06 -0.74 9.69 -39.61 -0.38 -1.13 16 20 C -0.12 -1.44 9.99 -39.44 -0.39 -1.83 16 21 C 0.11 1.29 6.48 -39.22 -0.25 1.03 16 22 O -0.31 -3.58 10.37 -19.44 -0.20 -3.78 16 23 C 0.60 6.07 3.42 101.05 0.35 6.42 16 24 F -0.16 -1.73 15.55 2.25 0.04 -1.70 16 25 F -0.13 -1.26 17.53 2.25 0.04 -1.22 16 26 F -0.17 -1.58 15.58 2.25 0.04 -1.55 16 27 C -0.19 -2.25 8.26 -39.44 -0.33 -2.58 16 28 C -0.05 -0.59 9.69 -39.61 -0.38 -0.97 16 29 H 0.27 6.83 8.29 -40.82 -0.34 6.49 16 30 H 0.39 6.71 7.18 -40.82 -0.29 6.42 16 31 H 0.17 4.36 5.82 -52.49 -0.31 4.06 16 32 H 0.17 2.59 8.06 -52.49 -0.42 2.17 16 33 H 0.10 1.11 8.08 -51.93 -0.42 0.69 16 34 H 0.09 1.03 7.46 -51.93 -0.39 0.64 16 35 H 0.14 1.57 7.30 -52.48 -0.38 1.19 16 36 H 0.14 1.45 8.06 -52.49 -0.42 1.03 16 37 H 0.13 1.38 5.10 -52.49 -0.27 1.11 16 38 H 0.14 1.43 8.06 -52.48 -0.42 1.01 16 LS Contribution 347.48 15.07 5.24 5.24 Total: -1.00 -32.19 347.48 -6.28 -38.46 By element: Atomic # 1 Polarization: 14.24 SS G_CDS: -2.87 Total: 11.37 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: -4.33 Total: 3.35 kcal Atomic # 7 Polarization: -47.90 SS G_CDS: 0.74 Total: -47.16 kcal Atomic # 8 Polarization: -19.94 SS G_CDS: -0.14 Total: -20.08 kcal Atomic # 9 Polarization: -4.58 SS G_CDS: 0.11 Total: -4.47 kcal Atomic # 14 Polarization: 18.32 SS G_CDS: -5.02 Total: 13.29 kcal Total LS contribution 5.24 Total: 5.24 kcal Total: -32.19 -6.28 -38.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097723.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.394 kcal (2) G-P(sol) polarization free energy of solvation -32.185 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.579 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.859 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds