Wall clock time and date at job start Tue Mar 31 2020 06:04:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.39404 * 125.66578 * 2 1 4 4 C 1.37733 * 107.70593 * 179.89925 * 3 2 1 5 5 N 1.38438 * 126.42666 * 180.14010 * 4 3 2 6 6 C 1.34768 * 119.99721 * 0.26147 * 5 4 3 7 7 O 1.21840 * 120.00170 * 0.02562 * 6 5 4 8 8 C 1.41409 * 120.00082 * 180.02562 * 6 5 4 9 9 H 1.07997 * 119.99422 * 0.02562 * 8 6 5 10 10 C 1.40157 * 119.99933 * 180.02562 * 8 6 5 11 11 N 1.30614 * 120.00388 * 359.97438 * 10 8 6 12 12 Si 1.86807 * 119.99919 * 180.02562 * 10 8 6 13 13 H 1.48501 * 109.46997 * 59.99717 * 12 10 8 14 14 H 1.48491 * 109.47383 * 179.97438 * 12 10 8 15 15 H 1.48494 * 109.46930 * 300.00255 * 12 10 8 16 16 N 1.36471 * 107.15541 * 0.36205 * 4 3 2 17 17 C 1.40153 * 126.12271 * 179.81472 * 16 4 3 18 18 C 1.38900 * 120.00962 * 324.69978 * 17 16 4 19 19 C 1.38038 * 119.97970 * 179.75111 * 18 17 16 20 20 C 1.38777 * 120.01652 * 0.55271 * 19 18 17 21 21 O 1.35931 * 119.98357 * 179.72518 * 20 19 18 22 22 C 1.42897 * 117.00136 * 359.97438 * 21 20 19 23 23 F 1.39901 * 109.47058 * 60.00351 * 22 21 20 24 24 F 1.39908 * 109.46841 * 180.02562 * 22 21 20 25 25 F 1.39897 * 109.47230 * 300.00145 * 22 21 20 26 26 C 1.38770 * 120.02870 * 359.70096 * 20 19 18 27 27 C 1.38047 * 120.01393 * 0.02562 * 26 20 19 28 28 N 1.31089 * 125.66162 * 180.31052 * 2 1 3 29 29 H 1.09001 * 109.46953 * 269.71253 * 1 2 3 30 30 H 1.09000 * 109.47318 * 29.70851 * 1 2 3 31 31 H 1.09000 * 109.47161 * 149.71482 * 1 2 3 32 32 H 1.08005 * 126.14303 * 0.03913 * 3 2 1 33 33 H 0.96997 * 120.00007 * 180.26899 * 5 4 3 34 34 H 0.97003 * 120.00106 * 180.02562 * 11 10 8 35 35 H 1.07997 * 120.00810 * 0.02562 * 18 17 16 36 36 H 1.08000 * 119.99415 * 180.25805 * 19 18 17 37 37 H 1.08002 * 119.99349 * 179.97438 * 26 20 19 38 38 H 1.07995 * 120.00334 * 180.02562 * 27 26 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.3199 1.1326 0.0000 4 6 3.6301 0.7079 0.0023 5 7 4.7555 1.5140 0.0058 6 6 4.6236 2.8552 0.0126 7 8 3.5139 3.3582 0.0161 8 6 5.7732 3.6787 0.0156 9 1 6.7568 3.2328 0.0121 10 6 5.6360 5.0735 0.0232 11 7 4.4463 5.6128 0.0270 12 14 7.1546 6.1614 0.0265 13 1 7.9627 5.8870 -1.1888 14 1 6.7417 7.5878 0.0341 15 1 7.9666 5.8742 1.2361 16 7 3.6109 -0.6567 -0.0046 17 6 4.7313 -1.4987 -0.0086 18 6 5.8765 -1.1279 -0.7017 19 6 6.9815 -1.9552 -0.7010 20 6 6.9443 -3.1626 -0.0177 21 8 8.0308 -3.9794 -0.0222 22 6 9.1757 -3.5321 -0.7509 23 9 9.6212 -2.3170 -0.2196 24 9 10.1940 -4.4864 -0.6513 25 9 8.8328 -3.3554 -2.0956 26 6 5.7986 -3.5361 0.6705 27 6 4.6949 -2.7069 0.6753 28 7 2.2713 -1.0651 -0.0058 29 1 -0.3633 -0.0052 1.0277 30 1 -0.3634 0.8926 -0.5093 31 1 -0.3633 -0.8874 -0.5183 32 1 1.9827 2.1586 0.0006 33 1 5.6390 1.1135 0.0033 34 1 4.3514 6.5782 0.0319 35 1 5.9040 -0.1904 -1.2372 36 1 7.8735 -1.6652 -1.2363 37 1 5.7702 -4.4760 1.2017 38 1 3.8035 -2.9976 1.2113 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097097819.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:04:29 Heat of formation + Delta-G solvation = -117.065654 kcal Electronic energy + Delta-G solvation = -30987.228058 eV Core-core repulsion = 25996.178818 eV Total energy + Delta-G solvation = -4991.049241 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 355.093 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -50.70122 -48.43306 -48.28468 -41.15163 -40.22242 -37.94069 -37.71056 -34.08008 -33.16362 -32.41575 -31.41574 -30.06133 -28.58613 -27.36766 -26.49981 -25.83096 -23.52489 -22.77904 -21.53190 -20.05243 -19.82065 -19.50969 -19.40690 -19.07885 -18.03117 -17.08467 -16.79695 -15.75275 -15.61935 -15.47799 -15.30737 -15.02798 -14.88177 -14.73486 -14.67424 -14.56183 -14.40729 -14.37850 -14.15799 -13.67137 -13.57437 -13.28507 -13.09751 -12.95002 -12.65902 -12.51237 -12.36402 -11.95839 -11.85617 -11.49210 -11.35740 -11.19690 -10.80314 -10.50831 -9.99843 -9.82735 -9.45182 -9.39834 -9.04029 -7.88089 -7.82604 -7.14521 -6.53149 -5.08303 0.77234 0.95937 1.21082 2.40875 2.55092 2.63295 2.99317 3.05410 3.07108 3.34382 3.45949 3.49980 3.73605 3.85736 4.24917 4.29826 4.39668 4.48005 4.71723 4.92892 5.06072 5.19066 5.47682 5.54602 5.59314 5.63149 5.80630 5.91477 5.94272 6.07738 6.14371 6.24966 6.41439 6.51950 6.84579 6.99672 7.10684 7.49448 7.60433 7.85510 7.95441 8.27621 8.63933 9.03165 10.19983 10.38511 Molecular weight = 355.09amu Principal moments of inertia in cm(-1) A = 0.008185 B = 0.003548 C = 0.002543 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3419.978798 B = 7889.781098 C =11008.218782 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 C 0.097 3.903 3 C -0.294 4.294 4 C 0.351 3.649 5 N -0.669 5.669 6 C 0.544 3.456 7 O -0.548 6.548 8 C -0.533 4.533 9 H 0.072 0.928 10 C 0.089 3.911 11 N -0.741 5.741 12 Si 0.916 3.084 13 H -0.265 1.265 14 H -0.277 1.277 15 H -0.265 1.265 16 N -0.364 5.364 17 C 0.170 3.830 18 C -0.110 4.110 19 C -0.158 4.158 20 C 0.083 3.917 21 O -0.309 6.309 22 C 0.603 3.397 23 F -0.163 7.163 24 F -0.134 7.134 25 F -0.165 7.165 26 C -0.098 4.098 27 C -0.085 4.085 28 N -0.325 5.325 29 H 0.074 0.926 30 H 0.078 0.922 31 H 0.067 0.933 32 H 0.180 0.820 33 H 0.391 0.609 34 H 0.277 0.723 35 H 0.143 0.857 36 H 0.141 0.859 37 H 0.146 0.854 38 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.937 -15.992 -0.513 17.066 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.126 4.126 2 C -0.068 4.068 3 C -0.326 4.326 4 C 0.131 3.869 5 N -0.316 5.316 6 C 0.354 3.646 7 O -0.430 6.430 8 C -0.568 4.568 9 H 0.090 0.910 10 C -0.135 4.135 11 N -0.368 5.368 12 Si 0.740 3.260 13 H -0.189 1.189 14 H -0.201 1.201 15 H -0.189 1.189 16 N -0.146 5.146 17 C 0.076 3.924 18 C -0.131 4.131 19 C -0.177 4.177 20 C 0.040 3.960 21 O -0.229 6.229 22 C 0.512 3.488 23 F -0.145 7.145 24 F -0.115 7.115 25 F -0.147 7.147 26 C -0.117 4.117 27 C -0.105 4.105 28 N -0.148 5.148 29 H 0.093 0.907 30 H 0.097 0.903 31 H 0.086 0.914 32 H 0.197 0.803 33 H 0.226 0.774 34 H 0.088 0.912 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.163 0.837 38 H 0.166 0.834 Dipole moment (debyes) X Y Z Total from point charges 5.191 -16.745 -0.448 17.537 hybrid contribution 1.734 1.247 -0.215 2.146 sum 6.925 -15.498 -0.663 16.988 Atomic orbital electron populations 1.20138 0.86950 1.02901 1.02623 1.22271 0.96657 0.91224 0.96692 1.21930 0.88358 1.00871 1.21422 1.19100 0.91193 0.80198 0.96382 1.44188 1.04586 1.07791 1.75060 1.17019 0.91446 0.77418 0.78725 1.90605 1.27074 1.70889 1.54395 1.19846 0.92740 0.91161 1.53018 0.91005 1.25742 0.97061 0.98379 0.92355 1.69967 1.23331 1.12401 1.31103 0.86273 0.81352 0.78573 0.79827 1.18924 1.20144 1.18920 1.45916 1.04298 1.02091 1.62327 1.17487 0.85477 0.91839 0.97596 1.20922 0.92015 1.01345 0.98858 1.21298 1.00459 0.93747 1.02215 1.18635 0.85862 0.90439 1.01024 1.86395 1.21149 1.46431 1.68958 1.19367 0.79115 0.74568 0.75749 1.93325 1.89724 1.45265 1.86177 1.93304 1.57574 1.64676 1.95940 1.93311 1.91906 1.94892 1.34576 1.20250 0.89591 1.01309 1.00532 1.20839 0.98592 0.92842 0.98208 1.77373 0.83860 1.21396 1.32178 0.90731 0.90330 0.91427 0.80291 0.77390 0.91239 0.83958 0.84108 0.83667 0.83411 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.07 -0.93 10.44 36.01 0.38 -0.56 16 2 C 0.10 1.82 7.19 -82.47 -0.59 1.23 16 3 C -0.29 -6.54 9.61 -39.33 -0.38 -6.92 16 4 C 0.35 7.66 7.44 -152.48 -1.13 6.53 16 5 N -0.67 -14.89 4.98 -13.71 -0.07 -14.96 16 6 C 0.54 14.50 7.52 -15.06 -0.11 14.39 16 7 O -0.55 -16.27 11.99 5.06 0.06 -16.21 16 8 C -0.53 -13.78 9.29 -37.66 -0.35 -14.13 16 9 H 0.07 1.67 7.85 -52.49 -0.41 1.26 16 10 C 0.09 2.26 5.50 -17.35 -0.10 2.17 16 11 N -0.74 -20.30 11.72 55.56 0.65 -19.65 16 12 Si 0.92 18.44 29.56 -169.99 -5.02 13.41 16 13 H -0.26 -5.19 7.11 56.52 0.40 -4.79 16 14 H -0.28 -5.44 7.11 56.52 0.40 -5.04 16 15 H -0.26 -5.21 7.11 56.52 0.40 -4.81 16 16 N -0.36 -6.98 3.77 -9.48 -0.04 -7.02 16 17 C 0.17 2.72 6.39 -83.57 -0.53 2.18 16 18 C -0.11 -1.60 8.45 -39.41 -0.33 -1.93 16 19 C -0.16 -1.97 8.25 -39.46 -0.33 -2.29 16 20 C 0.08 0.98 6.49 -39.19 -0.25 0.73 16 21 O -0.31 -3.36 10.37 -19.52 -0.20 -3.56 16 22 C 0.60 6.00 3.42 101.05 0.35 6.35 16 23 F -0.16 -1.69 15.56 2.25 0.04 -1.66 16 24 F -0.13 -1.24 17.53 2.25 0.04 -1.20 16 25 F -0.16 -1.67 15.56 2.25 0.04 -1.63 16 26 C -0.10 -1.09 9.98 -39.45 -0.39 -1.48 16 27 C -0.08 -1.12 9.76 -39.41 -0.38 -1.50 16 28 N -0.33 -6.23 12.32 33.62 0.41 -5.82 16 29 H 0.07 0.92 8.14 -51.93 -0.42 0.49 16 30 H 0.08 1.01 8.14 -51.93 -0.42 0.59 16 31 H 0.07 0.82 8.14 -51.93 -0.42 0.40 16 32 H 0.18 4.44 5.86 -52.48 -0.31 4.13 16 33 H 0.39 7.54 6.07 -40.82 -0.25 7.29 16 34 H 0.28 6.84 8.29 -40.82 -0.34 6.50 16 35 H 0.14 2.14 6.33 -52.49 -0.33 1.80 16 36 H 0.14 1.57 5.09 -52.49 -0.27 1.30 16 37 H 0.15 1.21 8.06 -52.49 -0.42 0.79 16 38 H 0.15 1.86 8.06 -52.49 -0.42 1.44 16 LS Contribution 344.44 15.07 5.19 5.19 Total: -1.00 -31.10 344.44 -5.89 -36.99 By element: Atomic # 1 Polarization: 14.18 SS G_CDS: -2.81 Total: 11.36 kcal Atomic # 6 Polarization: 8.92 SS G_CDS: -4.17 Total: 4.76 kcal Atomic # 7 Polarization: -48.41 SS G_CDS: 0.96 Total: -47.45 kcal Atomic # 8 Polarization: -19.63 SS G_CDS: -0.14 Total: -19.77 kcal Atomic # 9 Polarization: -4.60 SS G_CDS: 0.11 Total: -4.49 kcal Atomic # 14 Polarization: 18.44 SS G_CDS: -5.02 Total: 13.41 kcal Total LS contribution 5.19 Total: 5.19 kcal Total: -31.10 -5.89 -36.99 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097819.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -80.077 kcal (2) G-P(sol) polarization free energy of solvation -31.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -111.179 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.887 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.989 kcal (6) G-S(sol) free energy of system = (1) + (5) -117.066 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds