Wall clock time and date at job start Tue Mar 31 2020 05:58:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46501 * 1 3 3 C 1.36872 * 127.10164 * 2 1 4 4 C 1.47915 * 126.51136 * 359.94766 * 3 2 1 5 5 C 1.39536 * 120.14504 * 47.18347 * 4 3 2 6 6 C 1.37948 * 119.86943 * 179.74524 * 5 4 3 7 7 C 1.38384 * 120.16650 * 0.55652 * 6 5 4 8 8 C 1.38291 * 120.29848 * 359.69445 * 7 6 5 9 9 C 1.38128 * 120.12326 * 0.02972 * 8 7 6 10 10 Cl 1.73602 * 120.08552 * 179.97438 * 9 8 7 11 11 N 1.31450 * 106.97589 * 179.97438 * 3 2 1 12 12 N 1.28548 * 109.72441 * 359.77052 * 11 3 2 13 13 C 1.30603 * 110.05910 * 0.38646 * 12 11 3 14 14 S 1.76196 * 126.27478 * 179.88172 * 13 12 11 15 15 O 1.42097 * 104.27795 * 153.61516 * 14 13 12 16 16 O 1.42109 * 104.27727 * 25.76282 * 14 13 12 17 17 C 1.81398 * 104.45212 * 269.68912 * 14 13 12 18 18 C 1.52998 * 109.47177 * 179.97438 * 17 14 13 19 19 C 1.50701 * 109.47061 * 179.97438 * 18 17 14 20 20 H 1.07996 * 120.00113 * 0.02562 * 19 18 17 21 21 C 1.37876 * 120.00029 * 180.02562 * 19 18 17 22 22 N 1.31517 * 119.99699 * 180.02562 * 21 19 18 23 23 Si 1.86793 * 120.00177 * 359.97438 * 21 19 18 24 24 H 1.48501 * 109.47186 * 89.99958 * 23 21 19 25 25 H 1.48501 * 109.47350 * 210.00171 * 23 21 19 26 26 H 1.48507 * 109.47101 * 330.00429 * 23 21 19 27 27 H 1.08995 * 109.47229 * 264.78337 * 1 2 3 28 28 H 1.09005 * 109.47047 * 24.78203 * 1 2 3 29 29 H 1.09001 * 109.47288 * 144.78138 * 1 2 3 30 30 H 1.08001 * 120.06502 * 0.02567 * 5 4 3 31 31 H 1.08002 * 119.91789 * 180.25194 * 6 5 4 32 32 H 1.08004 * 119.85017 * 179.72053 * 7 6 5 33 33 H 1.08000 * 119.93836 * 180.02562 * 8 7 6 34 34 H 1.08993 * 109.47005 * 300.00019 * 17 14 13 35 35 H 1.09002 * 109.46937 * 60.00333 * 17 14 13 36 36 H 1.08993 * 109.47791 * 300.00267 * 18 17 14 37 37 H 1.09002 * 109.46762 * 60.00414 * 18 17 14 38 38 H 0.97003 * 119.99638 * 179.97438 * 22 21 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2907 1.0916 0.0000 4 6 1.8734 2.5107 -0.0011 5 6 0.8882 2.9521 0.8831 6 6 0.5071 4.2779 0.8808 7 6 1.0910 5.1678 -0.0036 8 6 2.0643 4.7368 -0.8864 9 6 2.4592 3.4131 -0.8907 10 17 3.6806 2.8730 -1.9998 11 7 3.5249 0.6394 0.0006 12 7 3.5159 -0.6461 0.0058 13 6 2.2860 -1.0855 0.0005 14 16 1.7822 -2.7738 0.0016 15 8 0.4968 -2.7556 0.6070 16 8 2.8674 -3.4631 0.6071 17 6 1.6524 -3.2087 -1.7547 18 6 1.2172 -4.6694 -1.8877 19 6 1.1088 -5.0305 -3.3468 20 1 1.3287 -4.2921 -4.1036 21 6 0.7288 -6.3035 -3.7156 22 7 0.6347 -6.6186 -4.9890 23 14 0.3490 -7.5809 -2.4067 24 1 -1.0934 -7.5192 -2.0586 25 1 0.6756 -8.9334 -2.9255 26 1 1.1627 -7.3054 -1.1953 27 1 -0.3633 -0.0934 1.0234 28 1 -0.3633 0.9331 -0.4308 29 1 -0.3634 -0.8396 -0.5926 30 1 0.4283 2.2581 1.5709 31 1 -0.2524 4.6212 1.5676 32 1 0.7856 6.2037 -0.0040 33 1 2.5165 5.4364 -1.5738 34 1 0.9159 -2.5646 -2.2350 35 1 2.6215 -3.0736 -2.2350 36 1 1.9539 -5.3133 -1.4075 37 1 0.2481 -4.8049 -1.4073 38 1 0.3677 -7.5144 -5.2484 RHF calculation, no. of doubly occupied orbitals= 59 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097097910.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:58:42 Heat of formation + Delta-G solvation = 29.945613 kcal Electronic energy + Delta-G solvation = -26302.434136 eV Core-core repulsion = 22299.936544 eV Total energy + Delta-G solvation = -4002.497592 eV No. of doubly occupied orbitals = 59 Molecular weight (most abundant/longest-lived isotopes) = 355.054 amu Computer time = 0.63 seconds Orbital eigenvalues (eV) -43.26910 -39.73327 -37.14636 -36.78078 -35.89573 -35.31701 -34.10902 -33.04493 -31.62010 -31.40169 -29.82069 -28.01084 -26.17901 -24.30724 -23.73929 -22.87946 -21.41221 -21.23042 -19.13748 -18.21989 -17.64513 -17.20145 -16.83392 -16.53278 -16.33205 -15.76238 -15.59733 -15.33576 -14.66771 -14.39217 -14.36461 -14.04584 -13.87190 -13.75230 -13.47621 -12.89310 -12.50575 -12.15549 -12.10340 -12.03578 -12.00693 -11.92341 -11.86533 -11.55578 -11.40123 -11.36327 -11.16753 -10.88621 -10.56728 -10.52969 -10.40099 -10.19410 -9.77285 -9.50281 -9.43185 -9.08802 -8.73074 -6.22914 -4.25854 0.00953 0.18797 0.58696 1.17402 1.72308 1.97550 2.38252 2.80347 2.99564 3.21802 3.30356 3.33320 3.55863 3.86439 4.02543 4.11388 4.29727 4.29825 4.35477 4.60118 4.65119 4.77621 4.84060 4.89916 5.05978 5.10731 5.15839 5.24387 5.29440 5.42228 5.49893 5.61049 5.63135 5.74400 6.06838 6.07156 6.24679 6.65841 6.79616 7.43860 8.18609 8.27969 8.77558 9.35197 10.89134 Molecular weight = 355.05amu Principal moments of inertia in cm(-1) A = 0.017431 B = 0.002741 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1605.922124 B =10213.027497 C =10591.870496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.054 3.946 2 N -0.418 5.418 3 C 0.232 3.768 4 C -0.018 4.018 5 C -0.085 4.085 6 C -0.114 4.114 7 C -0.089 4.089 8 C -0.110 4.110 9 C 0.002 3.998 10 Cl -0.037 7.037 11 N -0.258 5.258 12 N -0.188 5.188 13 C -0.345 4.345 14 S 2.491 3.509 15 O -0.932 6.932 16 O -0.905 6.905 17 C -0.544 4.544 18 C -0.007 4.007 19 C -0.522 4.522 20 H 0.080 0.920 21 C 0.074 3.926 22 N -0.892 5.892 23 Si 0.868 3.132 24 H -0.271 1.271 25 H -0.281 1.281 26 H -0.260 1.260 27 H 0.102 0.898 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.136 0.864 31 H 0.138 0.862 32 H 0.139 0.861 33 H 0.143 0.857 34 H 0.130 0.870 35 H 0.140 0.860 36 H 0.039 0.961 37 H 0.033 0.967 38 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.420 25.177 10.494 27.490 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.088 4.088 2 N -0.107 5.107 3 C -0.032 4.032 4 C -0.021 4.021 5 C -0.105 4.105 6 C -0.132 4.132 7 C -0.108 4.108 8 C -0.129 4.129 9 C -0.027 4.027 10 Cl -0.007 7.007 11 N -0.103 5.103 12 N -0.033 5.033 13 C -0.686 4.686 14 S 2.664 3.336 15 O -0.928 6.928 16 O -0.901 6.901 17 C -0.680 4.680 18 C -0.047 4.047 19 C -0.562 4.562 20 H 0.098 0.902 21 C -0.129 4.129 22 N -0.530 5.530 23 Si 0.694 3.306 24 H -0.196 1.196 25 H -0.206 1.206 26 H -0.184 1.184 27 H 0.120 0.880 28 H 0.118 0.882 29 H 0.127 0.873 30 H 0.153 0.847 31 H 0.156 0.844 32 H 0.157 0.843 33 H 0.161 0.839 34 H 0.149 0.851 35 H 0.158 0.842 36 H 0.057 0.943 37 H 0.051 0.949 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -2.025 24.535 11.074 26.995 hybrid contribution -1.260 -0.085 -0.104 1.268 sum -3.286 24.450 10.971 26.999 Atomic orbital electron populations 1.22623 0.73578 1.06299 1.06322 1.46335 1.09354 1.04404 1.50583 1.23099 0.87446 0.89336 1.03368 1.17288 0.99260 0.86749 0.98798 1.21257 0.95315 0.96919 0.97013 1.21183 1.00295 0.92483 0.99228 1.21346 0.94858 1.00456 0.94091 1.21097 0.98157 0.93353 1.00279 1.21029 0.93901 0.93858 0.93906 1.98443 1.52317 1.90054 1.59927 1.74698 1.15897 1.02618 1.17119 1.74250 1.15880 1.03133 1.10077 1.38874 0.94414 1.16867 1.18439 1.06835 0.74786 0.71139 0.80857 1.93549 1.39543 1.84360 1.75374 1.93604 1.54162 1.67623 1.74703 1.30001 1.12045 1.09810 1.16106 1.19524 0.97270 0.86402 1.01481 1.20769 1.48066 0.98462 0.88867 0.90195 1.24963 0.94380 0.98164 0.95415 1.69873 1.46872 1.20832 1.15373 0.86940 0.79644 0.81378 0.82619 1.19612 1.20630 1.18423 0.88007 0.88195 0.87265 0.84664 0.84380 0.84320 0.83920 0.85128 0.84203 0.94254 0.94916 0.92222 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.05 0.49 9.20 59.85 0.55 1.04 16 2 N -0.42 -5.59 3.20 -121.94 -0.39 -5.98 16 3 C 0.23 3.23 6.85 -154.24 -1.06 2.17 16 4 C -0.02 -0.18 5.51 -104.94 -0.58 -0.76 16 5 C -0.09 -0.62 8.71 -39.20 -0.34 -0.96 16 6 C -0.11 -0.57 10.03 -39.63 -0.40 -0.97 16 7 C -0.09 -0.43 10.04 -39.51 -0.40 -0.83 16 8 C -0.11 -0.75 9.82 -39.60 -0.39 -1.13 16 9 C 0.00 0.02 6.35 -39.11 -0.25 -0.23 16 10 Cl -0.04 -0.44 27.28 -51.86 -1.41 -1.85 16 11 N -0.26 -4.40 11.24 32.51 0.37 -4.03 16 12 N -0.19 -3.45 12.18 30.48 0.37 -3.08 16 13 C -0.35 -5.61 7.69 -89.32 -0.69 -6.30 16 14 S 2.49 42.07 5.21 -107.50 -0.56 41.51 16 15 O -0.93 -15.64 15.97 -57.54 -0.92 -16.56 16 16 O -0.90 -18.15 17.94 -57.54 -1.03 -19.19 16 17 C -0.54 -9.47 5.92 37.16 0.22 -9.25 16 18 C -0.01 -0.16 4.05 -27.88 -0.11 -0.27 16 19 C -0.52 -13.95 9.66 -34.44 -0.33 -14.29 16 20 H 0.08 2.25 7.99 -52.49 -0.42 1.84 16 21 C 0.07 2.06 5.47 -17.82 -0.10 1.96 16 22 N -0.89 -26.23 13.96 55.43 0.77 -25.45 16 23 Si 0.87 20.54 27.47 -169.99 -4.67 15.87 16 24 H -0.27 -6.20 7.11 56.52 0.40 -5.80 16 25 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 26 H -0.26 -5.90 6.54 56.52 0.37 -5.53 16 27 H 0.10 0.76 8.14 -51.93 -0.42 0.34 16 28 H 0.10 0.62 7.29 -51.93 -0.38 0.24 16 29 H 0.11 0.96 7.27 -51.93 -0.38 0.59 16 30 H 0.14 0.80 7.69 -52.49 -0.40 0.39 16 31 H 0.14 0.33 8.06 -52.49 -0.42 -0.09 16 32 H 0.14 0.29 8.06 -52.48 -0.42 -0.14 16 33 H 0.14 0.70 8.06 -52.49 -0.42 0.28 16 34 H 0.13 1.93 8.14 -51.93 -0.42 1.51 16 35 H 0.14 2.31 8.14 -51.92 -0.42 1.89 16 36 H 0.04 0.87 7.20 -51.93 -0.37 0.50 16 37 H 0.03 0.69 7.57 -51.93 -0.39 0.29 16 38 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 LS Contribution 356.42 15.07 5.37 5.37 Total: -1.00 -36.06 356.42 -10.02 -46.08 By element: Atomic # 1 Polarization: 1.18 SS G_CDS: -4.05 Total: -2.87 kcal Atomic # 6 Polarization: -25.96 SS G_CDS: -3.87 Total: -29.82 kcal Atomic # 7 Polarization: -39.67 SS G_CDS: 1.12 Total: -38.55 kcal Atomic # 8 Polarization: -33.79 SS G_CDS: -1.95 Total: -35.74 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -4.67 Total: 15.87 kcal Atomic # 16 Polarization: 42.07 SS G_CDS: -0.56 Total: 41.51 kcal Atomic # 17 Polarization: -0.44 SS G_CDS: -1.41 Total: -1.85 kcal Total LS contribution 5.37 Total: 5.37 kcal Total: -36.06 -10.02 -46.08 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097097910.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.023 kcal (2) G-P(sol) polarization free energy of solvation -36.057 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 39.966 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.021 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.077 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.946 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.63 seconds