Wall clock time and date at job start Tue Mar 31 2020 05:45:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50708 * 1 3 3 C 1.38349 * 120.34298 * 2 1 4 4 N 1.31927 * 121.07676 * 180.02562 * 3 2 1 5 5 C 1.31697 * 121.87923 * 359.74482 * 4 3 2 6 6 C 1.39527 * 120.56534 * 0.54684 * 5 4 3 7 7 C 1.47840 * 120.55824 * 179.72457 * 6 5 4 8 8 O 1.21557 * 119.99741 * 154.17583 * 7 6 5 9 9 N 1.34765 * 120.00020 * 333.89723 * 7 6 5 10 10 C 1.46505 * 120.00200 * 357.48909 * 9 7 6 11 11 C 1.50707 * 109.46999 * 103.85145 * 10 9 7 12 12 H 1.08002 * 119.99727 * 0.02562 * 11 10 9 13 13 C 1.37872 * 119.99807 * 180.02562 * 11 10 9 14 14 N 1.31512 * 120.00258 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 119.99678 * 179.97438 * 13 11 10 16 16 H 1.48504 * 109.46846 * 90.00186 * 15 13 11 17 17 H 1.48505 * 109.46901 * 209.99947 * 15 13 11 18 18 H 1.48496 * 109.46930 * 330.00150 * 15 13 11 19 19 C 1.46505 * 119.99960 * 177.49246 * 9 7 6 20 20 C 1.53001 * 109.46924 * 244.29055 * 19 9 7 21 21 C 1.53003 * 109.46921 * 180.02562 * 20 19 9 22 22 C 1.52997 * 109.47113 * 59.99994 * 21 20 19 23 23 C 1.52995 * 109.47412 * 300.00030 * 22 21 20 24 24 C 1.52997 * 109.47346 * 299.99992 * 23 22 21 25 25 C 1.53000 * 109.47186 * 59.99840 * 24 23 22 26 26 C 1.53001 * 109.47094 * 300.00046 * 21 20 19 27 27 C 1.52997 * 109.47018 * 4.29469 * 19 9 7 28 28 C 1.53000 * 109.47065 * 124.29448 * 19 9 7 29 29 C 1.38349 * 120.34919 * 180.02562 * 2 1 3 30 30 H 1.09004 * 109.46886 * 269.97211 * 1 2 3 31 31 H 1.09000 * 109.47011 * 29.97500 * 1 2 3 32 32 H 1.09004 * 109.47186 * 149.97546 * 1 2 3 33 33 H 1.08004 * 119.46868 * 0.02562 * 3 2 1 34 34 H 1.08000 * 119.72089 * 180.26961 * 5 4 3 35 35 H 1.08998 * 109.47265 * 223.85171 * 10 9 7 36 36 H 1.09000 * 109.47077 * 343.85253 * 10 9 7 37 37 H 0.97001 * 119.99675 * 180.02562 * 14 13 11 38 38 H 1.08999 * 109.47431 * 299.99910 * 20 19 9 39 39 H 1.09006 * 109.46885 * 60.00257 * 20 19 9 40 40 H 1.09001 * 109.47153 * 180.02562 * 21 20 19 41 41 H 1.09004 * 109.46658 * 179.97438 * 22 21 20 42 42 H 1.09008 * 109.47023 * 60.00466 * 22 21 20 43 43 H 1.09006 * 109.47066 * 179.97438 * 23 22 21 44 44 H 1.09004 * 109.47039 * 300.00449 * 24 23 22 45 45 H 1.08994 * 109.47443 * 179.97438 * 24 23 22 46 46 H 1.08999 * 109.47391 * 180.02562 * 25 24 23 47 47 H 1.08999 * 109.47328 * 300.00568 * 26 21 20 48 48 H 1.09000 * 109.47499 * 179.97438 * 26 21 20 49 49 H 1.09004 * 109.46705 * 299.99731 * 27 19 9 50 50 H 1.08994 * 109.47443 * 59.99916 * 27 19 9 51 51 H 1.09001 * 109.47210 * 300.00060 * 28 19 9 52 52 H 1.08999 * 109.47391 * 60.00027 * 28 19 9 53 53 H 1.08006 * 120.85182 * 359.95748 * 29 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2060 1.1940 0.0000 4 7 3.5251 1.2109 -0.0005 5 6 4.2349 0.1016 0.0040 6 6 3.6054 -1.1436 -0.0020 7 6 4.4024 -2.3888 -0.0032 8 8 3.9303 -3.4129 0.4507 9 7 5.6501 -2.3898 -0.5124 10 6 6.1965 -1.1711 -1.1147 11 6 7.1754 -0.5351 -0.1616 12 1 7.3713 -0.9931 0.7967 13 6 7.8209 0.6314 -0.5130 14 7 7.5820 1.1894 -1.6797 15 14 9.0338 1.4202 0.6687 16 1 10.3944 0.8828 0.4132 17 1 9.0365 2.8914 0.4664 18 1 8.6346 1.1133 2.0657 19 6 6.4602 -3.6095 -0.4638 20 6 7.6836 -3.3741 0.4243 21 6 8.5300 -4.6478 0.4746 22 6 8.9884 -5.0116 -0.9390 23 6 7.7650 -5.2469 -1.8272 24 6 6.9295 -6.3920 -1.2516 25 6 6.4710 -6.0283 0.1621 26 6 7.6944 -5.7929 1.0503 27 6 5.6243 -4.7542 0.1122 28 6 6.9187 -3.9739 -1.8773 29 6 2.2061 -1.1939 -0.0005 30 1 -0.3633 -0.0005 1.0277 31 1 -0.3633 0.8902 -0.5134 32 1 -0.3634 -0.8898 -0.5142 33 1 1.6629 2.1275 0.0004 34 1 5.3136 0.1561 0.0078 35 1 6.7061 -1.4224 -2.0449 36 1 5.3854 -0.4731 -1.3219 37 1 8.0364 2.0099 -1.9270 38 1 8.2791 -2.5586 0.0140 39 1 7.3570 -3.1145 1.4314 40 1 9.4013 -4.4803 1.1077 41 1 9.5917 -5.9187 -0.9031 42 1 9.5837 -4.1957 -1.3492 43 1 8.0917 -5.5056 -2.8345 44 1 7.5325 -7.2994 -1.2157 45 1 6.0578 -6.5594 -1.8840 46 1 5.8761 -6.8443 0.5724 47 1 7.3678 -5.5337 2.0574 48 1 8.2972 -6.7004 1.0857 49 1 5.2978 -4.4946 1.1192 50 1 4.7528 -4.9219 -0.5205 51 1 6.0472 -4.1415 -2.5101 52 1 7.5142 -3.1584 -2.2877 53 1 1.6858 -2.1404 -0.0003 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000097101966.mol2 53 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:45:19 Heat of formation + Delta-G solvation = 1.323629 kcal Electronic energy + Delta-G solvation = -34308.676529 eV Core-core repulsion = 30337.542968 eV Total energy + Delta-G solvation = -3971.133561 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 354.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.82177 -41.42257 -39.75560 -37.17753 -34.76041 -34.47325 -33.65154 -33.48870 -33.30627 -31.45529 -29.43184 -28.02319 -26.90156 -26.68446 -25.57906 -24.82658 -23.48246 -22.58797 -22.31833 -21.93566 -20.20581 -18.78519 -18.17293 -18.12244 -17.79663 -17.40582 -16.80504 -16.40117 -16.12262 -15.46009 -15.34679 -15.30087 -15.01158 -14.99390 -14.65310 -14.32179 -14.21381 -14.16707 -13.99183 -13.96049 -13.81806 -13.61251 -13.47081 -13.25536 -13.18818 -13.00006 -12.91979 -12.71847 -12.38204 -12.25517 -12.15719 -11.83700 -11.70127 -11.59185 -11.55974 -11.54558 -11.12878 -10.77340 -10.67821 -10.60231 -10.49444 -10.40886 -9.80959 -9.66968 -9.33440 -8.23175 -6.36230 -0.20773 0.28462 1.39199 1.42923 1.50725 1.86909 2.16797 2.39737 2.88359 3.05666 3.45530 3.65082 3.66417 3.82344 3.86208 3.87816 3.99998 4.06469 4.16517 4.24077 4.29602 4.34190 4.36704 4.37994 4.41567 4.49924 4.53494 4.67075 4.74737 4.81634 4.83869 4.85170 4.86300 4.89865 4.94094 5.04755 5.12042 5.15631 5.18061 5.20978 5.23031 5.25792 5.26855 5.27859 5.33754 5.38102 5.46041 5.48177 5.62608 5.65718 5.70096 5.71536 5.79333 5.89652 6.00207 6.54656 6.78837 7.04041 7.24396 7.36088 8.81173 Molecular weight = 354.20amu Principal moments of inertia in cm(-1) A = 0.008778 B = 0.005216 C = 0.003605 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3189.059947 B = 5366.469825 C = 7765.252541 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.098 4.098 2 C -0.152 4.152 3 C 0.106 3.894 4 N -0.516 5.516 5 C 0.096 3.904 6 C -0.209 4.209 7 C 0.551 3.449 8 O -0.570 6.570 9 N -0.582 5.582 10 C 0.230 3.770 11 C -0.540 4.540 12 H 0.065 0.935 13 C 0.035 3.965 14 N -0.904 5.904 15 Si 0.946 3.054 16 H -0.270 1.270 17 H -0.283 1.283 18 H -0.272 1.272 19 C 0.180 3.820 20 C -0.112 4.112 21 C -0.084 4.084 22 C -0.103 4.103 23 C -0.077 4.077 24 C -0.101 4.101 25 C -0.094 4.094 26 C -0.101 4.101 27 C -0.075 4.075 28 C -0.112 4.112 29 C -0.035 4.035 30 H 0.086 0.914 31 H 0.090 0.910 32 H 0.076 0.924 33 H 0.187 0.813 34 H 0.200 0.800 35 H 0.017 0.983 36 H 0.044 0.956 37 H 0.269 0.731 38 H 0.070 0.930 39 H 0.034 0.966 40 H 0.076 0.924 41 H 0.088 0.912 42 H 0.053 0.947 43 H 0.085 0.915 44 H 0.086 0.914 45 H 0.057 0.943 46 H 0.078 0.922 47 H 0.050 0.950 48 H 0.085 0.915 49 H 0.055 0.945 50 H 0.051 0.949 51 H 0.048 0.952 52 H 0.050 0.950 53 H 0.148 0.852 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.168 -10.405 1.209 11.680 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C -0.154 4.154 3 C -0.052 4.052 4 N -0.224 5.224 5 C -0.059 4.059 6 C -0.213 4.213 7 C 0.340 3.660 8 O -0.453 6.453 9 N -0.309 5.309 10 C 0.109 3.891 11 C -0.578 4.578 12 H 0.083 0.917 13 C -0.168 4.168 14 N -0.542 5.542 15 Si 0.771 3.229 16 H -0.195 1.195 17 H -0.209 1.209 18 H -0.197 1.197 19 C 0.097 3.903 20 C -0.151 4.151 21 C -0.103 4.103 22 C -0.141 4.141 23 C -0.096 4.096 24 C -0.138 4.138 25 C -0.113 4.113 26 C -0.139 4.139 27 C -0.113 4.113 28 C -0.150 4.150 29 C -0.061 4.061 30 H 0.104 0.896 31 H 0.108 0.892 32 H 0.095 0.905 33 H 0.204 0.796 34 H 0.216 0.784 35 H 0.035 0.965 36 H 0.062 0.938 37 H 0.078 0.922 38 H 0.088 0.912 39 H 0.053 0.947 40 H 0.095 0.905 41 H 0.106 0.894 42 H 0.071 0.929 43 H 0.103 0.897 44 H 0.105 0.895 45 H 0.076 0.924 46 H 0.096 0.904 47 H 0.069 0.931 48 H 0.104 0.896 49 H 0.073 0.927 50 H 0.069 0.931 51 H 0.067 0.933 52 H 0.069 0.931 53 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -4.887 -9.960 1.288 11.169 hybrid contribution 0.288 0.502 0.341 0.672 sum -4.599 -9.458 1.628 10.642 Atomic orbital electron populations 1.20752 0.86583 1.04442 1.03768 1.21226 0.99747 0.92540 1.01871 1.23578 0.89748 0.99231 0.92624 1.67909 1.09209 1.31622 1.13686 1.25158 1.04246 0.86854 0.89633 1.21212 0.96007 0.95075 1.09056 1.18351 0.81976 0.87569 0.78054 1.90717 1.72099 1.32768 1.49760 1.48211 1.12970 1.13416 1.56280 1.19795 0.94408 0.81542 0.93330 1.21547 1.24483 1.08545 1.03232 0.91675 1.25572 0.97833 0.97054 0.96380 1.70008 1.42602 1.19973 1.21573 0.85728 0.79767 0.77779 0.79590 1.19495 1.20870 1.19673 1.20473 0.90835 0.83203 0.95835 1.21976 0.96404 0.98786 0.97891 1.21109 0.97658 0.93949 0.97534 1.21529 0.96713 1.01840 0.93981 1.21031 0.95139 0.93536 0.99889 1.21524 0.99385 0.97793 0.95083 1.21334 0.96424 0.97012 0.96557 1.21524 0.96143 0.98398 0.97819 1.21867 0.95603 0.93015 1.00834 1.21797 0.99389 0.98600 0.95234 1.21718 0.91543 0.99846 0.92999 0.89595 0.89161 0.90500 0.79623 0.78411 0.96535 0.93831 0.92190 0.91186 0.94674 0.90548 0.89388 0.92863 0.89711 0.89532 0.92411 0.90372 0.93114 0.89637 0.92662 0.93075 0.93279 0.93082 0.83465 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.10 -1.73 10.03 71.24 0.71 -1.02 16 2 C -0.15 -4.31 5.89 -19.81 -0.12 -4.43 16 3 C 0.11 3.35 10.85 84.70 0.92 4.27 16 4 N -0.52 -21.67 10.35 -194.75 -2.01 -23.69 16 5 C 0.10 4.38 8.65 85.02 0.74 5.11 16 6 C -0.21 -8.80 5.55 -19.99 -0.11 -8.91 16 7 C 0.55 24.45 7.42 86.79 0.64 25.10 16 8 O -0.57 -25.47 11.89 -3.90 -0.05 -25.51 16 9 N -0.58 -25.58 2.49 -782.43 -1.94 -27.53 16 10 C 0.23 11.21 4.41 85.63 0.38 11.59 16 11 C -0.54 -27.39 5.34 25.60 0.14 -27.25 16 12 H 0.07 3.35 6.14 -2.91 -0.02 3.33 16 13 C 0.03 1.79 5.38 84.65 0.46 2.24 16 14 N -0.90 -49.33 13.29 21.45 0.28 -49.04 16 15 Si 0.95 41.80 29.54 68.60 2.03 43.82 16 16 H -0.27 -11.49 7.11 99.48 0.71 -10.79 16 17 H -0.28 -12.46 7.11 99.48 0.71 -11.76 16 18 H -0.27 -11.98 7.11 99.48 0.71 -11.27 16 19 C 0.18 6.86 0.86 3.60 0.00 6.87 16 20 C -0.11 -4.20 3.29 30.60 0.10 -4.09 16 21 C -0.08 -2.36 3.19 -10.79 -0.03 -2.40 16 22 C -0.10 -2.60 5.19 30.59 0.16 -2.44 16 23 C -0.08 -2.02 3.19 -10.81 -0.03 -2.05 16 24 C -0.10 -2.34 5.19 30.59 0.16 -2.18 16 25 C -0.09 -2.53 3.20 -10.77 -0.03 -2.57 16 26 C -0.10 -2.54 5.19 30.60 0.16 -2.38 16 27 C -0.08 -2.70 2.84 30.61 0.09 -2.61 16 28 C -0.11 -3.88 4.30 30.58 0.13 -3.75 16 29 C -0.03 -1.19 9.40 22.73 0.21 -0.98 16 30 H 0.09 1.30 8.14 -2.38 -0.02 1.28 16 31 H 0.09 1.23 8.09 -2.39 -0.02 1.21 16 32 H 0.08 1.23 8.09 -2.38 -0.02 1.21 16 33 H 0.19 4.30 8.06 -2.91 -0.02 4.28 16 34 H 0.20 10.17 3.10 -2.91 -0.01 10.16 16 35 H 0.02 0.87 6.45 -2.39 -0.02 0.85 16 36 H 0.04 2.30 4.23 -2.39 -0.01 2.29 16 37 H 0.27 14.03 8.31 -92.71 -0.77 13.26 16 38 H 0.07 2.98 5.98 -2.39 -0.01 2.96 16 39 H 0.03 1.42 7.95 -2.38 -0.02 1.40 16 40 H 0.08 2.01 8.14 -2.39 -0.02 1.99 16 41 H 0.09 1.72 8.14 -2.38 -0.02 1.70 16 42 H 0.05 1.47 8.14 -2.38 -0.02 1.45 16 43 H 0.08 1.95 8.14 -2.38 -0.02 1.93 16 44 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 45 H 0.06 1.36 8.14 -2.39 -0.02 1.34 16 46 H 0.08 1.91 8.14 -2.39 -0.02 1.89 16 47 H 0.05 1.35 8.14 -2.39 -0.02 1.33 16 48 H 0.09 1.67 8.14 -2.39 -0.02 1.65 16 49 H 0.05 2.25 6.46 -2.39 -0.02 2.24 16 50 H 0.05 1.98 6.90 -2.39 -0.02 1.97 16 51 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 52 H 0.05 1.99 6.73 -2.39 -0.02 1.97 16 53 H 0.15 4.58 7.93 -2.91 -0.02 4.56 16 Total: -1.00 -62.03 382.24 3.89 -58.14 By element: Atomic # 1 Polarization: 34.77 SS G_CDS: 0.92 Total: 35.69 kcal Atomic # 6 Polarization: -16.55 SS G_CDS: 4.67 Total: -11.89 kcal Atomic # 7 Polarization: -96.58 SS G_CDS: -3.67 Total: -100.26 kcal Atomic # 8 Polarization: -25.47 SS G_CDS: -0.05 Total: -25.51 kcal Atomic # 14 Polarization: 41.80 SS G_CDS: 2.03 Total: 43.82 kcal Total: -62.03 3.89 -58.14 kcal The number of atoms in the molecule is 53 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097101966.mol2 53 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.466 kcal (2) G-P(sol) polarization free energy of solvation -62.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -2.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.889 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -58.142 kcal (6) G-S(sol) free energy of system = (1) + (5) 1.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds