Wall clock time and date at job start Tue Mar 31 2020 06:12:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31515 * 1 3 3 Si 1.86799 * 119.99984 * 2 1 4 4 H 1.48500 * 109.47406 * 179.97438 * 3 2 1 5 5 H 1.48504 * 109.47180 * 299.99242 * 3 2 1 6 6 H 1.48501 * 109.47606 * 59.99069 * 3 2 1 7 7 C 1.37879 * 120.00402 * 179.97438 * 2 1 3 8 8 H 1.07990 * 120.00382 * 180.02562 * 7 2 1 9 9 C 1.50703 * 119.99367 * 0.02562 * 7 2 1 10 10 N 1.46507 * 109.46929 * 179.97438 * 9 7 2 11 11 C 1.46492 * 119.99972 * 275.82450 * 10 9 7 12 12 C 1.50701 * 109.46993 * 269.99771 * 11 10 9 13 13 C 1.38673 * 120.41763 * 269.72020 * 12 11 10 14 14 C 1.38633 * 118.41828 * 179.77994 * 13 12 11 15 15 C 1.38220 * 119.16013 * 0.51726 * 14 13 12 16 16 N 1.31855 * 120.76656 * 359.72486 * 15 14 13 17 17 C 1.31883 * 121.72091 * 0.02562 * 16 15 14 18 18 C 1.34779 * 119.99844 * 95.82095 * 10 9 7 19 19 O 1.21580 * 119.99897 * 184.74272 * 18 10 9 20 20 C 1.47605 * 119.99747 * 4.73643 * 18 10 9 21 21 C 1.39263 * 119.90327 * 305.90611 * 20 18 10 22 22 C 1.38502 * 119.53824 * 180.25527 * 21 20 18 23 23 N 1.37469 * 134.85749 * 179.72315 * 22 21 20 24 24 H 0.97000 * 125.95271 * 0.02562 * 23 22 21 25 25 N 1.28811 * 108.10482 * 180.02562 * 23 22 21 26 26 N 1.28647 * 111.81506 * 359.37964 * 25 23 22 27 27 C 1.34772 * 109.30684 * 0.73291 * 26 25 23 28 28 C 1.39802 * 134.56174 * 179.23244 * 27 26 25 29 29 C 1.36473 * 119.96133 * 180.02562 * 28 27 26 30 30 F 1.35094 * 119.75886 * 180.02562 * 29 28 27 31 31 H 0.96999 * 119.99605 * 0.02562 * 1 2 3 32 32 H 1.08998 * 109.47100 * 60.00171 * 9 7 2 33 33 H 1.09004 * 109.47145 * 299.99419 * 9 7 2 34 34 H 1.09006 * 109.47653 * 29.99752 * 11 10 9 35 35 H 1.09000 * 109.47452 * 150.00137 * 11 10 9 36 36 H 1.08000 * 120.79175 * 0.02716 * 13 12 11 37 37 H 1.08003 * 120.41504 * 180.21856 * 14 13 12 38 38 H 1.08008 * 119.61892 * 179.74311 * 15 14 13 39 39 H 1.08005 * 119.61445 * 180.02562 * 17 16 15 40 40 H 1.07997 * 120.23095 * 359.97438 * 21 20 18 41 41 H 1.08001 * 120.01974 * 0.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 3.7091 1.3465 0.0006 5 1 1.8905 2.3964 -1.2126 6 1 1.8903 2.3966 1.2124 7 6 2.0046 -1.1940 0.0005 8 1 3.0845 -1.1940 0.0010 9 6 1.2511 -2.4991 0.0005 10 7 2.2031 -3.6127 0.0005 11 6 2.7769 -4.0858 -1.2616 12 6 1.8993 -5.1665 -1.8385 13 6 2.1210 -6.4971 -1.5170 14 6 1.2858 -7.4569 -2.0676 15 6 0.2739 -7.0594 -2.9212 16 7 0.0956 -5.7850 -3.2086 17 6 0.8676 -4.8448 -2.6994 18 6 2.5510 -4.2018 1.1618 19 8 3.4047 -5.0674 1.1724 20 6 1.8956 -3.7960 2.4205 21 6 1.8832 -2.4549 2.7958 22 6 1.2707 -2.0833 3.9812 23 7 1.0802 -0.8933 4.6425 24 1 1.3825 -0.0212 4.3443 25 7 0.4303 -1.1379 5.7274 26 7 0.1550 -2.3888 5.8481 27 6 0.6560 -3.0592 4.7918 28 6 0.6766 -4.4016 4.4020 29 6 1.2869 -4.7636 3.2362 30 9 1.3039 -6.0619 2.8632 31 1 -0.4849 0.8401 -0.0004 32 1 0.6248 -2.5570 -0.8897 33 1 0.6241 -2.5567 0.8904 34 1 2.8413 -3.2558 -1.9653 35 1 3.7743 -4.4861 -1.0798 36 1 2.9227 -6.7787 -0.8503 37 1 1.4271 -8.5024 -1.8363 38 1 -0.3785 -7.8014 -3.3576 39 1 0.6907 -3.8111 -2.9577 40 1 2.3518 -1.7106 2.1692 41 1 0.2099 -5.1518 5.0231 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097109052.mol2 41 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:12:31 Heat of formation + Delta-G solvation = 73.784503 kcal Electronic energy + Delta-G solvation = -31524.409583 eV Core-core repulsion = 27128.158508 eV Total energy + Delta-G solvation = -4396.251076 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 355.119 amu Computer time = 0.75 seconds Orbital eigenvalues (eV) -48.76552 -43.09060 -40.19329 -39.32241 -37.07859 -35.48476 -33.81756 -33.23199 -32.28886 -31.52345 -30.36193 -30.11537 -27.76971 -26.41380 -24.52801 -23.54912 -23.21983 -22.91031 -22.42142 -21.91110 -19.66856 -18.59592 -17.85235 -17.08888 -16.98665 -16.62451 -16.24895 -16.14223 -15.99201 -15.73677 -15.23769 -15.19879 -14.95228 -14.51211 -14.17277 -13.94529 -13.51278 -13.25275 -13.12933 -12.91033 -12.77705 -12.52066 -12.23113 -11.99244 -11.88655 -11.81026 -11.60006 -11.30523 -11.21211 -11.17189 -10.89220 -10.73002 -10.43242 -10.05494 -9.70844 -9.49258 -9.28267 -8.89779 -8.81446 -8.69004 -8.27031 -8.04619 -6.46257 -4.56667 0.47085 1.14643 1.25391 1.48618 2.28608 2.58880 2.96636 3.02189 3.10743 3.12752 3.43596 3.68594 3.87888 4.04711 4.11455 4.40920 4.63205 4.72460 4.79405 4.85878 4.94027 5.01363 5.09141 5.20719 5.26052 5.29494 5.41802 5.56113 5.78175 5.85094 5.94567 5.99661 6.05446 6.07789 6.29217 6.31553 6.42663 6.53543 6.66176 6.86125 6.89359 6.95672 7.21299 7.46338 7.74315 7.97438 8.15342 8.29885 8.46725 8.63745 9.11135 10.58926 Molecular weight = 355.12amu Principal moments of inertia in cm(-1) A = 0.008342 B = 0.004897 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3355.833864 B = 5715.940827 C = 8119.393318 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.877 5.877 2 C 0.069 3.931 3 Si 0.889 3.111 4 H -0.269 1.269 5 H -0.279 1.279 6 H -0.282 1.282 7 C -0.549 4.549 8 H 0.067 0.933 9 C 0.229 3.771 10 N -0.580 5.580 11 C 0.162 3.838 12 C -0.149 4.149 13 C -0.056 4.056 14 C -0.180 4.180 15 C 0.091 3.909 16 N -0.489 5.489 17 C 0.116 3.884 18 C 0.565 3.435 19 O -0.550 6.550 20 C -0.129 4.129 21 C -0.004 4.004 22 C 0.015 3.985 23 N -0.401 5.401 24 H 0.456 0.544 25 N -0.009 5.009 26 N -0.259 5.259 27 C 0.047 3.953 28 C -0.113 4.113 29 C 0.150 3.850 30 F -0.123 7.123 31 H 0.268 0.732 32 H 0.039 0.961 33 H 0.044 0.956 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.137 0.863 37 H 0.130 0.870 38 H 0.150 0.850 39 H 0.158 0.842 40 H 0.179 0.821 41 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.800 -6.348 1.359 7.070 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.514 5.514 2 C -0.136 4.136 3 Si 0.715 3.285 4 H -0.193 1.193 5 H -0.204 1.204 6 H -0.208 1.208 7 C -0.587 4.587 8 H 0.086 0.914 9 C 0.109 3.891 10 N -0.309 5.309 11 C 0.038 3.962 12 C -0.152 4.152 13 C -0.082 4.082 14 C -0.200 4.200 15 C -0.066 4.066 16 N -0.198 5.198 17 C -0.041 4.041 18 C 0.352 3.648 19 O -0.429 6.429 20 C -0.137 4.137 21 C -0.026 4.026 22 C -0.105 4.105 23 N -0.131 5.131 24 H 0.304 0.696 25 N 0.009 4.991 26 N -0.135 5.135 27 C -0.079 4.079 28 C -0.136 4.136 29 C 0.127 3.873 30 F -0.101 7.101 31 H 0.078 0.922 32 H 0.057 0.943 33 H 0.062 0.938 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.155 0.845 37 H 0.148 0.852 38 H 0.168 0.832 39 H 0.175 0.825 40 H 0.196 0.804 41 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 1.724 -5.927 2.056 6.506 hybrid contribution 1.455 0.807 -0.659 1.790 sum 3.179 -5.120 1.397 6.186 Atomic orbital electron populations 1.69943 1.05968 1.27581 1.47871 1.24973 0.94804 0.99206 0.94616 0.86582 0.80319 0.83273 0.78292 1.19338 1.20430 1.20774 1.21507 0.93821 0.90194 1.53205 0.91444 1.19664 0.87698 0.82282 0.99456 1.48154 1.44796 1.33809 1.04120 1.20176 0.95346 0.94858 0.85824 1.21385 0.99187 0.95743 0.98888 1.21667 0.98138 0.92324 0.96074 1.22111 0.97499 1.00627 0.99749 1.22712 0.95799 0.93036 0.95025 1.67711 1.26869 1.01470 1.23729 1.22806 0.89882 0.99038 0.92372 1.17813 0.82180 0.81468 0.83313 1.90724 1.32515 1.32954 1.86754 1.19689 1.03918 0.92753 0.97346 1.20880 0.94498 0.95609 0.91629 1.19661 1.06189 0.86298 0.98383 1.44834 1.42117 1.10136 1.15970 0.69621 1.77908 1.06302 1.12258 1.02666 1.75338 1.20528 0.96757 1.20864 1.19526 1.00532 0.94358 0.93450 1.19483 1.03678 0.93828 0.96628 1.16821 0.98787 0.78310 0.93427 1.91544 1.94456 1.32978 1.91155 0.92205 0.94273 0.93818 0.88516 0.89405 0.84467 0.85161 0.83241 0.82485 0.80366 0.83065 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -21.24 13.29 55.43 0.74 -20.51 16 2 C 0.07 1.55 5.46 -17.82 -0.10 1.46 16 3 Si 0.89 17.54 29.54 -169.99 -5.02 12.52 16 4 H -0.27 -5.28 7.11 56.52 0.40 -4.88 16 5 H -0.28 -5.71 7.11 56.52 0.40 -5.31 16 6 H -0.28 -5.45 7.11 56.52 0.40 -5.05 16 7 C -0.55 -11.87 7.02 -34.44 -0.24 -12.11 16 8 H 0.07 1.47 7.81 -52.49 -0.41 1.06 16 9 C 0.23 4.72 4.67 -5.19 -0.02 4.70 16 10 N -0.58 -10.76 2.44 -177.63 -0.43 -11.19 16 11 C 0.16 2.61 5.61 -5.20 -0.03 2.58 16 12 C -0.15 -2.32 5.48 -104.48 -0.57 -2.89 16 13 C -0.06 -0.81 9.86 -39.27 -0.39 -1.20 16 14 C -0.18 -2.31 10.11 -39.44 -0.40 -2.71 16 15 C 0.09 1.22 11.18 -17.55 -0.20 1.03 16 16 N -0.49 -7.78 10.36 -13.25 -0.14 -7.92 16 17 C 0.12 1.85 10.86 -17.55 -0.19 1.66 16 18 C 0.57 10.82 6.87 -12.44 -0.09 10.74 16 19 O -0.55 -11.24 16.27 5.29 0.09 -11.16 16 20 C -0.13 -2.32 4.74 -104.87 -0.50 -2.82 16 21 C 0.00 -0.08 7.68 -39.10 -0.30 -0.38 16 22 C 0.01 0.24 7.40 -84.20 -0.62 -0.39 16 23 N -0.40 -5.72 7.08 32.32 0.23 -5.49 16 24 H 0.46 5.07 8.96 -190.23 -1.71 3.37 16 25 N -0.01 -0.14 13.28 60.35 0.80 0.66 16 26 N -0.26 -4.33 12.42 32.09 0.40 -3.93 16 27 C 0.05 0.77 7.35 -84.95 -0.62 0.15 16 28 C -0.11 -1.72 10.00 -39.63 -0.40 -2.12 16 29 C 0.15 2.52 7.20 -39.39 -0.28 2.23 16 30 F -0.12 -2.12 16.60 2.25 0.04 -2.09 16 31 H 0.27 6.26 8.31 -40.82 -0.34 5.92 16 32 H 0.04 0.87 8.11 -51.93 -0.42 0.45 16 33 H 0.04 0.97 5.66 -51.93 -0.29 0.67 16 34 H 0.10 1.49 8.02 -51.93 -0.42 1.07 16 35 H 0.09 1.39 7.31 -51.93 -0.38 1.01 16 36 H 0.14 2.01 7.94 -52.49 -0.42 1.59 16 37 H 0.13 1.30 8.06 -52.48 -0.42 0.87 16 38 H 0.15 1.52 8.06 -52.48 -0.42 1.10 16 39 H 0.16 2.42 8.06 -52.48 -0.42 1.99 16 40 H 0.18 3.18 5.39 -52.49 -0.28 2.90 16 41 H 0.15 1.91 8.06 -52.49 -0.42 1.48 16 LS Contribution 363.87 15.07 5.48 5.48 Total: -1.00 -27.52 363.87 -7.92 -35.44 By element: Atomic # 1 Polarization: 13.40 SS G_CDS: -5.15 Total: 8.24 kcal Atomic # 6 Polarization: 4.89 SS G_CDS: -4.95 Total: -0.06 kcal Atomic # 7 Polarization: -49.98 SS G_CDS: 1.59 Total: -48.38 kcal Atomic # 8 Polarization: -11.24 SS G_CDS: 0.09 Total: -11.16 kcal Atomic # 9 Polarization: -2.12 SS G_CDS: 0.04 Total: -2.09 kcal Atomic # 14 Polarization: 17.54 SS G_CDS: -5.02 Total: 12.52 kcal Total LS contribution 5.48 Total: 5.48 kcal Total: -27.52 -7.92 -35.44 kcal The number of atoms in the molecule is 41 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097109052.mol2 41 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 109.223 kcal (2) G-P(sol) polarization free energy of solvation -27.518 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 81.705 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.920 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.439 kcal (6) G-S(sol) free energy of system = (1) + (5) 73.785 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.75 seconds