Wall clock time and date at job start Tue Mar 31 2020 06:14:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31519 * 1 3 3 Si 1.86801 * 119.99765 * 2 1 4 4 H 1.48498 * 109.47075 * 269.99891 * 3 2 1 5 5 H 1.48495 * 109.47322 * 30.00123 * 3 2 1 6 6 H 1.48504 * 109.46985 * 149.99913 * 3 2 1 7 7 C 1.37867 * 119.99948 * 180.02562 * 2 1 3 8 8 H 1.08002 * 119.99934 * 180.02562 * 7 2 1 9 9 C 1.50700 * 120.00179 * 359.97438 * 7 2 1 10 10 N 1.46502 * 109.47155 * 180.02562 * 9 7 2 11 11 N 1.40061 * 125.87646 * 269.99830 * 10 9 7 12 12 C 1.30247 * 109.69951 * 179.97438 * 11 10 9 13 13 C 1.41167 * 108.46705 * 0.02562 * 12 11 10 14 14 C 1.36311 * 125.87470 * 90.00111 * 10 9 7 15 15 N 1.33201 * 134.61183 * 0.02562 * 14 10 9 16 16 C 1.31509 * 120.68338 * 180.02562 * 15 14 10 17 17 N 1.32130 * 122.64427 * 359.66587 * 16 15 14 18 18 C 1.32860 * 121.19180 * 0.63921 * 17 16 15 19 19 N 1.38111 * 120.81406 * 179.69522 * 18 17 16 20 20 C 1.48533 * 111.00204 * 117.11588 * 19 18 17 21 21 C 1.55092 * 103.28383 * 200.33651 * 20 19 18 22 22 C 1.54598 * 102.84998 * 37.30321 * 21 20 19 23 23 C 1.47897 * 110.99554 * 359.71665 * 19 18 17 24 24 H 1.09000 * 109.91881 * 26.49470 * 23 19 18 25 25 C 1.50704 * 110.08713 * 265.28719 * 23 19 18 26 26 C 1.33387 * 125.20460 * 140.85682 * 25 23 19 27 27 C 1.38418 * 114.91940 * 179.97438 * 26 25 23 28 28 C 1.33388 * 114.92341 * 0.02562 * 27 26 25 29 29 S 1.75884 * 109.59314 * 359.75720 * 28 27 26 30 30 H 0.97000 * 119.99718 * 0.02562 * 1 2 3 31 31 H 1.08999 * 109.47175 * 59.99957 * 9 7 2 32 32 H 1.09000 * 109.47363 * 299.99809 * 9 7 2 33 33 H 1.08000 * 125.76499 * 179.97438 * 12 11 10 34 34 H 1.07995 * 118.68112 * 180.02562 * 16 15 14 35 35 H 1.09003 * 110.66452 * 318.71672 * 20 19 18 36 36 H 1.08998 * 110.66933 * 81.84271 * 20 19 18 37 37 H 1.09003 * 110.70966 * 278.99320 * 21 20 19 38 38 H 1.09003 * 110.81580 * 155.66412 * 21 20 19 39 39 H 1.09002 * 110.31193 * 219.18658 * 22 21 20 40 40 H 1.09000 * 110.30788 * 97.11602 * 22 21 20 41 41 H 1.07998 * 122.53838 * 0.02562 * 26 25 23 42 42 H 1.08004 * 122.53853 * 180.02562 * 27 26 25 43 43 H 1.08000 * 125.20770 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 2.4966 2.0464 -1.4001 5 1 1.4466 2.6527 0.7000 6 1 3.5467 1.4402 0.7001 7 6 2.0045 -1.1940 -0.0005 8 1 3.0845 -1.1940 -0.0001 9 6 1.2510 -2.4991 -0.0005 10 7 2.2031 -3.6126 -0.0005 11 7 2.7364 -4.2365 -1.1354 12 6 3.5498 -5.1869 -0.7725 13 6 3.5863 -5.2299 0.6380 14 6 2.7222 -4.2198 1.1040 15 7 2.5787 -4.0527 2.4177 16 6 3.2320 -4.8158 3.2665 17 7 4.0483 -5.7789 2.8767 18 6 4.2624 -6.0197 1.5877 19 7 5.1222 -7.0244 1.1890 20 6 4.3986 -8.0718 0.4239 21 6 5.3372 -9.3020 0.5284 22 6 5.8888 -9.1923 1.9685 23 6 5.7108 -7.7131 2.3581 24 1 5.0398 -7.6325 3.2132 25 6 7.0484 -7.1069 2.6965 26 6 7.5053 -6.8926 3.9312 27 6 8.7655 -6.3237 3.9963 28 6 9.3319 -6.0756 2.8144 29 16 8.2486 -6.5799 1.5237 30 1 -0.4850 0.8401 -0.0004 31 1 0.6240 -2.5566 -0.8903 32 1 0.6247 -2.5571 0.8897 33 1 4.1022 -5.8334 -1.4383 34 1 3.0913 -4.6525 4.3247 35 1 3.4334 -8.2859 0.8831 36 1 4.2726 -7.7707 -0.6160 37 1 6.1450 -9.2334 -0.2002 38 1 4.7776 -10.2284 0.3992 39 1 6.9438 -9.4653 1.9914 40 1 5.3184 -9.8321 2.6418 41 1 6.9354 -7.1446 4.8133 42 1 9.2533 -6.0979 4.9330 43 1 10.3079 -5.6358 2.6717 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199772.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:54 Heat of formation + Delta-G solvation = 169.206841 kcal Electronic energy + Delta-G solvation = -28683.442830 eV Core-core repulsion = 24857.542753 eV Total energy + Delta-G solvation = -3825.900077 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 355.116 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -41.69887 -39.86776 -38.15947 -37.43139 -34.19310 -33.43001 -31.66215 -31.56782 -30.95018 -29.18127 -27.63435 -27.17035 -24.38612 -23.84425 -23.53583 -22.70282 -21.67021 -21.00648 -20.06239 -19.27746 -17.95221 -17.62359 -16.78974 -16.64612 -16.49645 -15.70378 -15.24158 -15.13820 -14.73848 -14.51564 -14.24010 -13.97835 -13.72306 -13.41991 -13.14957 -12.94194 -12.87441 -12.62872 -12.31140 -12.20647 -12.11793 -11.74862 -11.60421 -11.44510 -11.20836 -11.11771 -10.92397 -10.88243 -10.78129 -10.61462 -10.29817 -10.22401 -9.81552 -9.35383 -8.83220 -8.65255 -8.62213 -8.44212 -8.38751 -7.92538 -6.24579 -4.31267 0.96423 1.02043 1.66509 1.73092 2.09522 2.71913 2.88075 2.97206 3.23519 3.29067 3.35162 3.38042 4.13108 4.18637 4.30649 4.33342 4.49682 4.62415 4.66636 4.80130 4.99360 5.03206 5.07458 5.11138 5.12862 5.24115 5.39603 5.47058 5.49120 5.53810 5.55150 5.64365 5.64642 5.71563 5.89907 6.05870 6.21345 6.24774 6.33821 6.46119 6.60809 6.97609 7.00880 7.05484 7.24759 7.61180 7.77222 7.87343 8.11552 8.59184 8.72648 9.34165 10.83681 Molecular weight = 355.12amu Principal moments of inertia in cm(-1) A = 0.013211 B = 0.003032 C = 0.002762 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2118.976741 B = 9231.740540 C =10134.415412 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.891 5.891 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.277 1.277 5 H -0.282 1.282 6 H -0.273 1.273 7 C -0.535 4.535 8 H 0.062 0.938 9 C 0.264 3.736 10 N -0.331 5.331 11 N -0.234 5.234 12 C 0.072 3.928 13 C -0.290 4.290 14 C 0.350 3.650 15 N -0.530 5.530 16 C 0.348 3.652 17 N -0.592 5.592 18 C 0.425 3.575 19 N -0.454 5.454 20 C 0.047 3.953 21 C -0.123 4.123 22 C -0.126 4.126 23 C 0.135 3.865 24 H 0.111 0.889 25 C -0.147 4.147 26 C -0.138 4.138 27 C -0.134 4.134 28 C -0.231 4.231 29 S 0.128 5.872 30 H 0.268 0.732 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.187 0.813 34 H 0.196 0.804 35 H 0.060 0.940 36 H 0.097 0.903 37 H 0.081 0.919 38 H 0.081 0.919 39 H 0.079 0.921 40 H 0.077 0.923 41 H 0.137 0.863 42 H 0.135 0.865 43 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.063 -20.904 5.254 25.736 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.529 5.529 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.203 1.203 5 H -0.208 1.208 6 H -0.197 1.197 7 C -0.573 4.573 8 H 0.080 0.920 9 C 0.147 3.853 10 N -0.118 5.118 11 N -0.050 5.050 12 C -0.123 4.123 13 C -0.306 4.306 14 C 0.101 3.899 15 N -0.251 5.251 16 C 0.054 3.946 17 N -0.317 5.317 18 C 0.176 3.824 19 N -0.172 5.172 20 C -0.079 4.079 21 C -0.161 4.161 22 C -0.164 4.164 23 C 0.026 3.974 24 H 0.129 0.871 25 C -0.265 4.265 26 C -0.169 4.169 27 C -0.165 4.165 28 C -0.367 4.367 29 S 0.392 5.608 30 H 0.078 0.922 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.204 0.796 34 H 0.213 0.787 35 H 0.079 0.921 36 H 0.116 0.884 37 H 0.099 0.901 38 H 0.100 0.900 39 H 0.098 0.902 40 H 0.095 0.905 41 H 0.155 0.845 42 H 0.152 0.848 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 13.490 -19.498 3.192 23.923 hybrid contribution 0.426 0.537 1.913 2.032 sum 13.915 -18.960 5.105 24.066 Atomic orbital electron populations 1.69918 1.06007 1.27690 1.49261 1.24891 0.94987 0.99377 0.94356 0.86337 0.79736 0.82149 0.78361 1.20273 1.20761 1.19736 1.21241 0.93581 0.89635 1.52888 0.92020 1.19822 0.85635 0.79812 1.00042 1.49526 1.35857 1.27711 0.98690 1.76978 1.11007 1.07702 1.09323 1.23531 0.98581 0.97745 0.92426 1.19655 1.09538 1.05819 0.95576 1.19037 0.91846 0.90451 0.88544 1.67525 1.27962 1.29466 1.00189 1.24502 0.86079 0.84714 0.99314 1.68218 1.23681 1.23981 1.15802 1.19428 0.84802 0.90478 0.87715 1.61386 1.26453 1.09628 1.19694 1.23379 0.95885 0.89236 0.99395 1.22581 0.99209 0.97280 0.97043 1.22560 1.02704 0.94299 0.96880 1.20892 0.91320 0.91251 0.93981 0.87106 1.24266 0.99259 1.06937 0.96077 1.20025 0.96599 1.03036 0.97198 1.20093 0.95762 1.02283 0.98387 1.25693 1.04551 1.09949 0.96542 1.84364 1.07692 1.59316 1.09451 0.92224 0.92675 0.92272 0.79583 0.78740 0.92122 0.88436 0.90061 0.90000 0.90217 0.90461 0.84499 0.84761 0.82392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.72 13.29 55.43 0.74 -24.98 16 2 C 0.07 1.90 5.46 -17.82 -0.10 1.80 16 3 Si 0.91 21.81 29.54 -169.99 -5.02 16.79 16 4 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 5 H -0.28 -6.61 7.11 56.52 0.40 -6.20 16 6 H -0.27 -6.59 7.11 56.52 0.40 -6.18 16 7 C -0.53 -15.31 9.39 -34.44 -0.32 -15.63 16 8 H 0.06 1.82 7.81 -52.49 -0.41 1.41 16 9 C 0.26 6.99 6.19 -5.19 -0.03 6.96 16 10 N -0.33 -7.88 3.63 -61.64 -0.22 -8.11 16 11 N -0.23 -5.00 12.45 30.80 0.38 -4.61 16 12 C 0.07 1.25 11.34 -17.11 -0.19 1.05 16 13 C -0.29 -5.30 5.80 -106.82 -0.62 -5.92 16 14 C 0.35 7.67 8.04 -156.23 -1.26 6.42 16 15 N -0.53 -11.07 10.47 -13.97 -0.15 -11.22 16 16 C 0.35 5.79 12.24 -92.11 -1.13 4.66 16 17 N -0.59 -9.31 8.30 -13.62 -0.11 -9.42 16 18 C 0.43 6.69 6.23 -154.85 -0.96 5.72 16 19 N -0.45 -5.56 4.72 -162.59 -0.77 -6.33 16 20 C 0.05 0.44 5.93 -1.81 -0.01 0.43 16 21 C -0.12 -0.85 7.08 -24.79 -0.18 -1.02 16 22 C -0.13 -0.97 6.55 -25.37 -0.17 -1.14 16 23 C 0.13 1.45 2.56 -67.79 -0.17 1.27 16 24 H 0.11 1.31 6.52 -51.93 -0.34 0.97 16 25 C -0.15 -1.69 5.24 -36.00 -0.19 -1.88 16 26 C -0.14 -1.51 10.04 -41.21 -0.41 -1.92 16 27 C -0.13 -1.39 10.18 -41.21 -0.42 -1.81 16 28 C -0.23 -2.43 11.23 29.04 0.33 -2.10 16 29 S 0.13 1.46 23.09 -107.50 -2.48 -1.02 16 30 H 0.27 7.27 8.31 -40.82 -0.34 6.93 16 31 H 0.06 1.50 8.14 -51.93 -0.42 1.08 16 32 H 0.06 1.64 8.14 -51.93 -0.42 1.22 16 33 H 0.19 2.34 7.19 -52.49 -0.38 1.97 16 34 H 0.20 2.45 8.06 -52.49 -0.42 2.03 16 35 H 0.06 0.60 7.99 -51.93 -0.42 0.18 16 36 H 0.10 0.84 6.78 -51.93 -0.35 0.49 16 37 H 0.08 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.08 0.43 8.14 -51.93 -0.42 0.00 16 39 H 0.08 0.60 7.68 -51.93 -0.40 0.20 16 40 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 41 H 0.14 1.31 8.06 -52.49 -0.42 0.89 16 42 H 0.13 1.12 8.06 -52.48 -0.42 0.69 16 43 H 0.16 1.32 8.06 -52.49 -0.42 0.90 16 LS Contribution 375.54 15.07 5.66 5.66 Total: -1.00 -32.68 375.54 -13.04 -45.72 By element: Atomic # 1 Polarization: 5.87 SS G_CDS: -5.23 Total: 0.64 kcal Atomic # 6 Polarization: 2.72 SS G_CDS: -5.84 Total: -3.12 kcal Atomic # 7 Polarization: -64.54 SS G_CDS: -0.13 Total: -64.67 kcal Atomic # 14 Polarization: 21.81 SS G_CDS: -5.02 Total: 16.79 kcal Atomic # 16 Polarization: 1.46 SS G_CDS: -2.48 Total: -1.02 kcal Total LS contribution 5.66 Total: 5.66 kcal Total: -32.68 -13.04 -45.72 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199772.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 214.930 kcal (2) G-P(sol) polarization free energy of solvation -32.679 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 182.251 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.044 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.723 kcal (6) G-S(sol) free energy of system = (1) + (5) 169.207 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds