Wall clock time and date at job start Tue Mar 31 2020 06:14:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86803 * 119.99983 * 2 1 4 4 H 1.48496 * 109.46900 * 240.00074 * 3 2 1 5 5 H 1.48499 * 109.46868 * 359.97438 * 3 2 1 6 6 H 1.48496 * 109.47204 * 119.99500 * 3 2 1 7 7 C 1.37876 * 120.00157 * 179.97438 * 2 1 3 8 8 H 1.08003 * 119.99683 * 179.97438 * 7 2 1 9 9 C 1.50695 * 120.00029 * 0.02562 * 7 2 1 10 10 N 1.46511 * 109.47231 * 180.02562 * 9 7 2 11 11 N 1.40063 * 125.86885 * 270.00282 * 10 9 7 12 12 C 1.30247 * 109.69088 * 179.97438 * 11 10 9 13 13 C 1.41169 * 108.47346 * 359.76901 * 12 11 10 14 14 C 1.36311 * 125.87389 * 89.99894 * 10 9 7 15 15 N 1.33197 * 134.61889 * 359.97438 * 14 10 9 16 16 C 1.31504 * 120.68603 * 180.02562 * 15 14 10 17 17 N 1.32120 * 122.64305 * 359.97438 * 16 15 14 18 18 C 1.32859 * 121.19814 * 0.02562 * 17 16 15 19 19 N 1.38105 * 120.81703 * 179.97438 * 18 17 16 20 20 C 1.47447 * 111.00260 * 239.15352 * 19 18 17 21 21 C 1.54317 * 107.23294 * 123.25504 * 20 19 18 22 22 C 1.55146 * 103.01834 * 22.28426 * 21 20 19 23 23 C 1.47845 * 110.99838 * 359.97438 * 19 18 17 24 24 H 1.08993 * 110.37296 * 332.57620 * 23 19 18 25 25 C 1.50706 * 110.37113 * 94.80962 * 23 19 18 26 26 C 1.33391 * 125.19937 * 219.99952 * 25 23 19 27 27 C 1.38423 * 114.92045 * 179.97438 * 26 25 23 28 28 C 1.33390 * 114.91979 * 359.97438 * 27 26 25 29 29 S 1.75878 * 125.20693 * 39.69212 * 25 23 19 30 30 H 0.96995 * 120.00407 * 0.02562 * 1 2 3 31 31 H 1.08998 * 109.47411 * 60.00438 * 9 7 2 32 32 H 1.08997 * 109.47195 * 299.99789 * 9 7 2 33 33 H 1.07997 * 125.76196 * 179.97438 * 12 11 10 34 34 H 1.07995 * 118.67604 * 180.02562 * 16 15 14 35 35 H 1.08993 * 109.89123 * 242.66560 * 20 19 18 36 36 H 1.09007 * 109.88394 * 3.85362 * 20 19 18 37 37 H 1.08998 * 110.70835 * 140.67173 * 21 20 19 38 38 H 1.09004 * 110.70627 * 263.73300 * 21 20 19 39 39 H 1.08999 * 110.99115 * 206.25229 * 22 21 20 40 40 H 1.09003 * 110.98379 * 82.44303 * 22 21 20 41 41 H 1.07995 * 122.54106 * 359.95411 * 26 25 23 42 42 H 1.08001 * 122.53959 * 180.02562 * 27 26 25 43 43 H 1.07998 * 125.20163 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2491 1.6178 0.0000 4 1 3.1028 1.6964 -1.2125 5 1 1.2841 2.7464 -0.0006 6 1 3.1028 1.6965 1.2125 7 6 2.0046 -1.1940 0.0005 8 1 3.0846 -1.1939 0.0001 9 6 1.2511 -2.4991 0.0005 10 7 2.2032 -3.6127 0.0018 11 7 2.7374 -4.2369 -1.1326 12 6 3.5504 -5.1872 -0.7686 13 6 3.5904 -5.2258 0.6420 14 6 2.7214 -4.2193 1.1070 15 7 2.5778 -4.0512 2.4205 16 6 3.2302 -4.8141 3.2700 17 7 4.0504 -5.7741 2.8812 18 6 4.2605 -6.0199 1.5925 19 7 5.1200 -7.0250 1.1949 20 6 6.2149 -6.4872 0.3667 21 6 7.5412 -6.8845 1.0482 22 6 7.1368 -8.1069 1.9138 23 6 5.7085 -7.7122 2.3641 24 1 5.7512 -7.0374 3.2190 25 6 4.9084 -8.9424 2.7073 26 6 4.6160 -9.3494 3.9435 27 6 3.8661 -10.5108 4.0131 28 6 3.5492 -11.0467 2.8334 29 16 4.2109 -10.0568 1.5390 30 1 -0.4850 0.8400 -0.0004 31 1 0.6249 -2.5571 -0.8897 32 1 0.6242 -2.5567 0.8903 33 1 4.1034 -5.8339 -1.4337 34 1 3.0892 -4.6498 4.3280 35 1 6.1688 -6.9171 -0.6338 36 1 6.1379 -5.4013 0.3100 37 1 8.2866 -7.1681 0.3052 38 1 7.9118 -6.0721 1.6733 39 1 7.8008 -8.2148 2.7715 40 1 7.1205 -9.0192 1.3175 41 1 4.9400 -8.8135 4.8233 42 1 3.5602 -10.9494 4.9514 43 1 2.9712 -11.9484 2.6944 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199773.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:14:59 Heat of formation + Delta-G solvation = 167.984610 kcal Electronic energy + Delta-G solvation = -28666.552289 eV Core-core repulsion = 24840.599212 eV Total energy + Delta-G solvation = -3825.953077 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 355.116 amu Computer time = 0.81 seconds Orbital eigenvalues (eV) -41.71222 -39.86974 -38.14020 -37.47682 -34.16322 -33.39914 -31.70609 -31.54557 -30.97966 -29.15176 -27.69076 -27.16324 -24.41964 -23.84667 -23.55134 -22.66091 -21.50587 -21.15951 -20.00728 -19.36878 -17.93562 -17.46784 -16.93747 -16.71594 -16.41992 -15.91265 -15.27339 -14.93953 -14.77599 -14.53517 -14.09722 -13.98191 -13.51159 -13.45670 -13.31966 -13.17001 -12.85555 -12.54311 -12.38061 -12.19825 -12.06682 -11.70947 -11.60661 -11.50221 -11.29085 -11.11806 -11.00169 -10.82799 -10.75048 -10.63060 -10.32427 -10.20119 -9.85093 -9.31127 -8.82441 -8.67837 -8.62744 -8.45343 -8.39431 -7.89684 -6.24954 -4.32051 0.94926 1.02494 1.63647 1.74388 2.05906 2.68684 2.89802 2.96949 3.23741 3.27132 3.31417 3.37971 4.13966 4.19990 4.29302 4.35377 4.47843 4.64484 4.66588 4.78173 4.99718 5.02386 5.09030 5.11052 5.15305 5.23000 5.40041 5.44297 5.51287 5.52347 5.55780 5.62359 5.65121 5.71341 5.91802 6.04058 6.22549 6.23857 6.34460 6.44053 6.62435 6.98802 7.02743 7.06986 7.26368 7.61000 7.77451 7.86984 8.12835 8.60420 8.71614 9.33089 10.83285 Molecular weight = 355.12amu Principal moments of inertia in cm(-1) A = 0.017277 B = 0.002744 C = 0.002643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1620.307220 B =10202.216755 C =10589.765179 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.890 5.890 2 C 0.067 3.933 3 Si 0.907 3.093 4 H -0.274 1.274 5 H -0.283 1.283 6 H -0.274 1.274 7 C -0.536 4.536 8 H 0.061 0.939 9 C 0.264 3.736 10 N -0.332 5.332 11 N -0.236 5.236 12 C 0.073 3.927 13 C -0.294 4.294 14 C 0.351 3.649 15 N -0.532 5.532 16 C 0.349 3.651 17 N -0.594 5.594 18 C 0.430 3.570 19 N -0.463 5.463 20 C 0.049 3.951 21 C -0.140 4.140 22 C -0.122 4.122 23 C 0.141 3.859 24 H 0.113 0.887 25 C -0.147 4.147 26 C -0.136 4.136 27 C -0.134 4.134 28 C -0.231 4.231 29 S 0.126 5.874 30 H 0.269 0.731 31 H 0.055 0.945 32 H 0.059 0.941 33 H 0.187 0.813 34 H 0.196 0.804 35 H 0.093 0.907 36 H 0.073 0.927 37 H 0.085 0.915 38 H 0.074 0.926 39 H 0.083 0.917 40 H 0.080 0.920 41 H 0.138 0.862 42 H 0.135 0.865 43 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.975 -20.885 5.501 25.725 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.528 5.528 2 C -0.136 4.136 3 Si 0.734 3.266 4 H -0.200 1.200 5 H -0.208 1.208 6 H -0.200 1.200 7 C -0.574 4.574 8 H 0.079 0.921 9 C 0.147 3.853 10 N -0.118 5.118 11 N -0.051 5.051 12 C -0.122 4.122 13 C -0.310 4.310 14 C 0.102 3.898 15 N -0.254 5.254 16 C 0.055 3.945 17 N -0.319 5.319 18 C 0.180 3.820 19 N -0.180 5.180 20 C -0.077 4.077 21 C -0.178 4.178 22 C -0.160 4.160 23 C 0.033 3.967 24 H 0.131 0.869 25 C -0.265 4.265 26 C -0.167 4.167 27 C -0.165 4.165 28 C -0.367 4.367 29 S 0.390 5.610 30 H 0.079 0.921 31 H 0.073 0.927 32 H 0.077 0.923 33 H 0.204 0.796 34 H 0.212 0.788 35 H 0.112 0.888 36 H 0.091 0.909 37 H 0.103 0.897 38 H 0.093 0.907 39 H 0.102 0.898 40 H 0.098 0.902 41 H 0.156 0.844 42 H 0.153 0.847 43 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges 12.600 -20.182 3.444 24.040 hybrid contribution 0.902 0.926 1.833 2.243 sum 13.502 -19.256 5.277 24.103 Atomic orbital electron populations 1.69904 1.06015 1.27817 1.49068 1.24896 0.94984 0.99359 0.94373 0.86398 0.79456 0.81855 0.78865 1.19985 1.20837 1.19968 1.21190 0.93477 0.89657 1.53107 0.92118 1.19814 0.85648 0.79766 1.00064 1.49523 1.35789 1.27805 0.98698 1.76982 1.11007 1.07781 1.09340 1.23522 0.98847 0.97432 0.92412 1.19672 1.10006 1.05750 0.95577 1.19035 0.91616 0.90576 0.88539 1.67521 1.27822 1.29865 1.00156 1.24490 0.85974 0.84726 0.99293 1.68189 1.24415 1.23509 1.15751 1.19435 0.89979 0.84879 0.87729 1.60150 1.16951 1.22114 1.18805 1.22970 0.87245 1.00109 0.97338 1.22813 0.97108 0.98205 0.99666 1.22837 0.94437 0.98583 1.00192 1.21081 0.90791 0.91242 0.93610 0.86910 1.24238 1.05641 1.00566 0.96075 1.20039 1.01539 0.97918 0.97219 1.20101 1.01075 0.96886 0.98430 1.25687 1.09034 1.05484 0.96495 1.84344 1.49989 1.17175 1.09509 0.92143 0.92689 0.92280 0.79639 0.78766 0.88842 0.90866 0.89678 0.90724 0.89801 0.90152 0.84445 0.84734 0.82381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.89 -25.67 13.29 55.43 0.74 -24.93 16 2 C 0.07 1.89 5.46 -17.82 -0.10 1.79 16 3 Si 0.91 21.53 29.54 -169.99 -5.02 16.50 16 4 H -0.27 -6.43 7.11 56.52 0.40 -6.03 16 5 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 6 H -0.27 -6.46 7.11 56.52 0.40 -6.06 16 7 C -0.54 -15.18 9.39 -34.44 -0.32 -15.51 16 8 H 0.06 1.76 7.81 -52.48 -0.41 1.35 16 9 C 0.26 7.01 6.19 -5.19 -0.03 6.98 16 10 N -0.33 -7.91 3.63 -61.64 -0.22 -8.13 16 11 N -0.24 -5.03 12.45 30.80 0.38 -4.65 16 12 C 0.07 1.26 11.30 -17.11 -0.19 1.07 16 13 C -0.29 -5.38 5.43 -106.81 -0.58 -5.96 16 14 C 0.35 7.71 8.04 -156.23 -1.26 6.45 16 15 N -0.53 -11.12 10.47 -13.97 -0.15 -11.27 16 16 C 0.35 5.81 12.24 -92.12 -1.13 4.68 16 17 N -0.59 -9.32 8.32 -13.63 -0.11 -9.43 16 18 C 0.43 6.74 6.20 -154.85 -0.96 5.78 16 19 N -0.46 -5.67 4.65 -163.47 -0.76 -6.43 16 20 C 0.05 0.48 5.90 -2.83 -0.02 0.47 16 21 C -0.14 -1.04 6.94 -24.91 -0.17 -1.22 16 22 C -0.12 -0.96 6.48 -24.61 -0.16 -1.11 16 23 C 0.14 1.51 2.51 -67.35 -0.17 1.34 16 24 H 0.11 1.33 6.60 -51.93 -0.34 0.99 16 25 C -0.15 -1.64 5.50 -36.00 -0.20 -1.84 16 26 C -0.14 -1.44 10.04 -41.21 -0.41 -1.85 16 27 C -0.13 -1.32 10.18 -41.21 -0.42 -1.74 16 28 C -0.23 -2.28 11.23 29.04 0.33 -1.95 16 29 S 0.13 1.37 23.11 -107.50 -2.48 -1.12 16 30 H 0.27 7.29 8.31 -40.82 -0.34 6.96 16 31 H 0.06 1.51 8.14 -51.93 -0.42 1.09 16 32 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 33 H 0.19 2.36 7.94 -52.49 -0.42 1.94 16 34 H 0.20 2.45 8.06 -52.49 -0.42 2.03 16 35 H 0.09 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.07 0.84 7.04 -51.93 -0.37 0.48 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.06 16 38 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.08 0.55 8.14 -51.93 -0.42 0.13 16 40 H 0.08 0.62 8.05 -51.93 -0.42 0.20 16 41 H 0.14 1.27 8.06 -52.49 -0.42 0.85 16 42 H 0.13 1.05 8.06 -52.49 -0.42 0.62 16 43 H 0.16 1.22 8.06 -52.49 -0.42 0.80 16 LS Contribution 376.64 15.07 5.68 5.68 Total: -1.00 -32.35 376.64 -13.06 -45.42 By element: Atomic # 1 Polarization: 6.29 SS G_CDS: -5.32 Total: 0.97 kcal Atomic # 6 Polarization: 3.18 SS G_CDS: -5.79 Total: -2.62 kcal Atomic # 7 Polarization: -64.71 SS G_CDS: -0.12 Total: -64.84 kcal Atomic # 14 Polarization: 21.53 SS G_CDS: -5.02 Total: 16.50 kcal Atomic # 16 Polarization: 1.37 SS G_CDS: -2.48 Total: -1.12 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -32.35 -13.06 -45.42 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199773.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 213.401 kcal (2) G-P(sol) polarization free energy of solvation -32.353 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 181.047 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -13.063 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.416 kcal (6) G-S(sol) free energy of system = (1) + (5) 167.985 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.81 seconds