Wall clock time and date at job start Tue Mar 31 2020 05:38:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 O 1.42902 * 109.46955 * 2 1 4 4 C 1.35679 * 117.00132 * 180.02562 * 3 2 1 5 5 N 1.32276 * 119.68505 * 359.97438 * 4 3 2 6 6 C 1.31934 * 121.64904 * 180.02562 * 5 4 3 7 7 C 1.38093 * 120.83172 * 359.97438 * 6 5 4 8 8 C 1.38778 * 119.28874 * 0.29969 * 7 6 5 9 9 C 1.38431 * 118.48720 * 359.45930 * 8 7 6 10 10 C 1.50692 * 120.44565 * 180.28836 * 9 8 7 11 11 N 1.46495 * 109.47290 * 260.23175 * 10 9 8 12 12 C 1.38109 * 120.00169 * 180.02562 * 11 10 9 13 13 N 1.32858 * 120.81282 * 0.02562 * 12 11 10 14 14 C 1.32119 * 121.19293 * 179.97438 * 13 12 11 15 15 N 1.31508 * 122.64955 * 359.97438 * 14 13 12 16 16 C 1.33201 * 120.68263 * 359.97438 * 15 14 13 17 17 C 1.40818 * 120.80943 * 179.71657 * 12 11 10 18 18 C 1.41168 * 134.70330 * 0.68800 * 17 12 11 19 19 N 1.30243 * 108.47360 * 179.54300 * 18 17 12 20 20 N 1.36308 * 134.62178 * 180.02562 * 16 15 14 21 21 C 1.46502 * 125.87146 * 359.97438 * 20 16 15 22 22 C 1.50701 * 109.47138 * 90.00143 * 21 20 16 23 23 H 1.08001 * 119.99768 * 359.97438 * 22 21 20 24 24 C 1.37874 * 119.99986 * 180.02562 * 22 21 20 25 25 N 1.31521 * 119.99999 * 179.97438 * 24 22 21 26 26 Si 1.86796 * 120.00279 * 359.97438 * 24 22 21 27 27 H 1.48499 * 109.47402 * 90.00161 * 26 24 22 28 28 H 1.48498 * 109.47314 * 210.00363 * 26 24 22 29 29 H 1.48503 * 109.46918 * 330.00189 * 26 24 22 30 30 H 1.08996 * 109.47352 * 299.99941 * 1 2 3 31 31 H 1.08996 * 109.47341 * 60.00372 * 1 2 3 32 32 H 1.09000 * 109.46945 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47352 * 240.00059 * 2 1 3 34 34 H 1.09004 * 109.47192 * 119.99354 * 2 1 3 35 35 H 1.07996 * 119.58422 * 180.02562 * 6 5 4 36 36 H 1.08002 * 120.35163 * 180.02562 * 7 6 5 37 37 H 1.08003 * 120.75921 * 179.71634 * 8 7 6 38 38 H 1.09003 * 109.47226 * 20.23083 * 10 9 8 39 39 H 1.09003 * 109.47205 * 140.23194 * 10 9 8 40 40 H 0.97001 * 120.00099 * 0.02562 * 11 10 9 41 41 H 1.08005 * 118.67824 * 180.02562 * 14 13 12 42 42 H 1.08007 * 125.75926 * 359.31027 * 18 17 12 43 43 H 1.08999 * 109.47364 * 210.00462 * 21 20 16 44 44 H 1.09009 * 109.46969 * 330.00508 * 21 20 16 45 45 H 0.96995 * 120.00084 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 8 2.0062 1.3473 0.0000 4 6 3.3513 1.5252 -0.0005 5 7 4.1514 0.4718 -0.0005 6 6 5.4645 0.5998 -0.0005 7 6 6.0539 1.8486 -0.0011 8 6 5.2490 2.9792 0.0047 9 6 3.8749 2.8115 -0.0007 10 6 2.9596 4.0085 -0.0013 11 7 2.4719 4.2511 1.3587 12 6 1.6118 5.3028 1.6065 13 7 1.2158 6.1043 0.6237 14 6 0.3929 7.1123 0.8522 15 7 -0.0813 7.3839 2.0484 16 6 0.2560 6.6375 3.0988 17 6 1.1279 5.5479 2.9061 18 6 1.3180 4.9425 4.1671 19 7 0.6193 5.5983 5.0492 20 7 -0.0545 6.6563 4.4260 21 6 -0.9388 7.6191 5.0872 22 6 -2.3530 7.0990 5.0661 23 1 -2.5714 6.1468 4.6057 24 6 -3.3683 7.8394 5.6335 25 7 -4.6027 7.3858 5.6146 26 14 -2.9909 9.4868 6.4291 27 1 -3.1079 10.5649 5.4146 28 1 -3.9547 9.7370 7.5307 29 1 -1.6097 9.4681 6.9745 30 1 -0.3634 0.5138 0.8899 31 1 -0.3634 0.5137 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8901 35 1 6.0863 -0.2832 -0.0009 36 1 7.1296 1.9444 -0.0015 37 1 5.6848 3.9674 0.0090 38 1 3.5061 4.8837 -0.3527 39 1 2.1137 3.8188 -0.6621 40 1 2.7531 3.6730 2.0851 41 1 0.0970 7.7381 0.0232 42 1 1.9353 4.0789 4.3660 43 1 -0.6179 7.7576 6.1197 44 1 -0.8946 8.5732 4.5619 45 1 -5.3169 7.9064 6.0141 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097199854.mol2 45 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:38:15 Heat of formation + Delta-G solvation = 121.406359 kcal Electronic energy + Delta-G solvation = -30162.983581 eV Core-core repulsion = 25989.976511 eV Total energy + Delta-G solvation = -4173.007070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 354.155 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -41.42715 -41.08788 -38.51143 -38.33129 -36.53171 -33.95061 -33.29703 -32.43663 -31.91871 -31.41020 -30.63450 -29.34562 -27.80764 -26.30676 -24.54819 -23.91650 -23.22324 -22.66185 -22.37932 -21.87297 -20.06538 -18.82603 -17.98956 -17.45727 -17.24738 -17.08575 -16.60584 -16.47536 -15.87659 -15.33368 -15.21861 -14.56268 -14.39009 -14.34160 -14.15593 -13.99704 -13.82424 -13.68683 -13.46948 -13.38742 -12.81811 -12.71370 -12.65243 -12.44076 -12.16111 -12.00556 -11.75961 -11.27149 -11.06227 -11.01037 -10.96303 -10.68651 -10.30134 -10.25252 -10.09862 -10.01000 -9.67059 -9.26362 -8.90853 -8.71558 -8.64180 -8.22286 -7.62297 -6.20120 -4.22462 0.61331 0.87815 1.30538 1.93888 2.69200 2.87352 3.01405 3.09240 3.22860 3.28428 3.30219 3.48777 3.85928 4.28092 4.35194 4.37955 4.42079 4.55731 4.63432 4.71083 4.74803 4.75478 4.85603 4.96932 5.06834 5.10492 5.10650 5.15723 5.28998 5.42864 5.49622 5.59905 5.64334 5.65707 5.71592 5.83684 5.86031 6.04400 6.27855 6.52271 6.56336 6.89115 6.91715 6.92923 7.23852 7.33365 7.42590 7.46590 7.85167 8.15660 8.33577 8.79046 8.83215 9.34776 10.92685 Molecular weight = 354.15amu Principal moments of inertia in cm(-1) A = 0.015733 B = 0.002340 C = 0.002223 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1779.268694 B =11963.191294 C =12594.017425 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.068 3.932 3 O -0.296 6.296 4 C 0.341 3.659 5 N -0.543 5.543 6 C 0.146 3.854 7 C -0.216 4.216 8 C -0.021 4.021 9 C -0.182 4.182 10 C 0.189 3.811 11 N -0.699 5.699 12 C 0.513 3.487 13 N -0.617 5.617 14 C 0.370 3.630 15 N -0.558 5.558 16 C 0.367 3.633 17 C -0.336 4.336 18 C 0.073 3.927 19 N -0.242 5.242 20 N -0.333 5.333 21 C 0.237 3.763 22 C -0.537 4.537 23 H 0.078 0.922 24 C 0.079 3.921 25 N -0.888 5.888 26 Si 0.875 3.125 27 H -0.270 1.270 28 H -0.280 1.280 29 H -0.264 1.264 30 H 0.068 0.932 31 H 0.066 0.934 32 H 0.079 0.921 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.160 0.840 36 H 0.139 0.861 37 H 0.144 0.856 38 H 0.078 0.922 39 H 0.082 0.918 40 H 0.408 0.592 41 H 0.196 0.804 42 H 0.182 0.818 43 H 0.051 0.949 44 H 0.051 0.949 45 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 22.052 -13.109 -14.179 29.312 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.007 4.007 3 O -0.203 6.203 4 C 0.162 3.838 5 N -0.267 5.267 6 C -0.010 4.010 7 C -0.236 4.236 8 C -0.047 4.047 9 C -0.186 4.186 10 C 0.065 3.935 11 N -0.331 5.331 12 C 0.261 3.739 13 N -0.348 5.348 14 C 0.076 3.924 15 N -0.283 5.283 16 C 0.120 3.880 17 C -0.354 4.354 18 C -0.122 4.122 19 N -0.057 5.057 20 N -0.119 5.119 21 C 0.119 3.881 22 C -0.575 4.575 23 H 0.096 0.904 24 C -0.125 4.125 25 N -0.525 5.525 26 Si 0.701 3.299 27 H -0.195 1.195 28 H -0.206 1.206 29 H -0.189 1.189 30 H 0.087 0.913 31 H 0.085 0.915 32 H 0.097 0.903 33 H 0.083 0.917 34 H 0.084 0.916 35 H 0.177 0.823 36 H 0.157 0.843 37 H 0.162 0.838 38 H 0.096 0.904 39 H 0.100 0.900 40 H 0.244 0.756 41 H 0.212 0.788 42 H 0.199 0.801 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 20.482 -12.913 -13.561 27.751 hybrid contribution 0.930 0.490 0.537 1.181 sum 21.412 -12.423 -13.024 27.972 Atomic orbital electron populations 1.21833 0.92692 1.02948 1.03825 1.22640 0.95055 0.80711 1.02311 1.86345 1.16257 1.30828 1.86824 1.19717 0.84405 0.89283 0.90443 1.67423 1.06653 1.32956 1.19663 1.22486 0.89201 0.97520 0.91818 1.22000 1.01576 0.93183 1.06861 1.21454 0.91510 0.99956 0.91790 1.19993 0.94867 0.93177 1.10519 1.19875 0.96153 0.93316 0.84197 1.44300 1.48762 1.30060 1.10000 1.17867 0.84157 0.85269 0.86644 1.67947 1.22800 1.10801 1.33249 1.24416 0.86116 0.89597 0.92224 1.67509 1.29846 1.32784 0.98190 1.18888 0.91019 0.90671 0.87446 1.19572 1.13931 1.06624 0.95239 1.23368 0.99655 1.00061 0.89110 1.76936 1.08311 0.98644 1.21848 1.48928 1.36883 1.23892 1.02180 1.20076 0.88807 0.85769 0.93490 1.21110 0.88853 1.07976 1.39575 0.90408 1.24772 0.94653 0.97857 0.95177 1.69874 0.99851 1.38529 1.44283 0.86873 0.78921 0.84337 0.79812 1.19489 1.20554 1.18872 0.91299 0.91530 0.90255 0.91704 0.91587 0.82316 0.84335 0.83828 0.90428 0.89985 0.75583 0.78786 0.80072 0.93095 0.93097 0.92170 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.28 10.28 37.15 0.38 -0.90 16 2 C 0.07 0.61 6.03 37.15 0.22 0.84 16 3 O -0.30 -3.26 9.37 -18.74 -0.18 -3.43 16 4 C 0.34 3.45 7.47 -17.12 -0.13 3.33 16 5 N -0.54 -5.13 9.22 -13.33 -0.12 -5.25 16 6 C 0.15 0.98 11.18 -17.56 -0.20 0.79 16 7 C -0.22 -1.22 10.11 -39.43 -0.40 -1.62 16 8 C -0.02 -0.14 9.81 -39.31 -0.39 -0.53 16 9 C -0.18 -1.60 5.28 -104.32 -0.55 -2.15 16 10 C 0.19 1.88 5.54 -5.20 -0.03 1.85 16 11 N -0.70 -8.15 5.67 -61.26 -0.35 -8.50 16 12 C 0.51 8.00 7.55 -154.85 -1.17 6.83 16 13 N -0.62 -9.81 9.69 -13.62 -0.13 -9.94 16 14 C 0.37 6.19 12.24 -92.12 -1.13 5.06 16 15 N -0.56 -11.70 10.47 -13.97 -0.15 -11.85 16 16 C 0.37 8.10 8.04 -156.23 -1.26 6.84 16 17 C -0.34 -6.15 6.14 -106.81 -0.66 -6.81 16 18 C 0.07 1.26 11.87 -17.11 -0.20 1.06 16 19 N -0.24 -5.18 12.45 30.80 0.38 -4.80 16 20 N -0.33 -7.91 3.63 -61.64 -0.22 -8.13 16 21 C 0.24 6.02 5.26 -5.19 -0.03 5.99 16 22 C -0.54 -15.76 9.94 -34.44 -0.34 -16.10 16 23 H 0.08 2.57 8.06 -52.49 -0.42 2.15 16 24 C 0.08 2.30 5.47 -17.82 -0.10 2.20 16 25 N -0.89 -27.25 13.96 55.43 0.77 -26.48 16 26 Si 0.87 21.04 27.47 -169.99 -4.67 16.37 16 27 H -0.27 -6.36 7.11 56.52 0.40 -5.95 16 28 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 29 H -0.26 -6.03 6.54 56.52 0.37 -5.66 16 30 H 0.07 0.65 8.14 -51.93 -0.42 0.23 16 31 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 32 H 0.08 0.50 8.14 -51.93 -0.42 0.07 16 33 H 0.06 0.55 8.10 -51.93 -0.42 0.13 16 34 H 0.07 0.58 8.10 -51.93 -0.42 0.16 16 35 H 0.16 0.62 8.06 -52.49 -0.42 0.19 16 36 H 0.14 0.43 8.06 -52.49 -0.42 0.01 16 37 H 0.14 0.67 8.06 -52.48 -0.42 0.25 16 38 H 0.08 0.72 8.03 -51.93 -0.42 0.30 16 39 H 0.08 0.94 7.87 -51.93 -0.41 0.54 16 40 H 0.41 4.21 8.33 -40.82 -0.34 3.87 16 41 H 0.20 2.44 8.06 -52.48 -0.42 2.01 16 42 H 0.18 2.18 8.06 -52.48 -0.42 1.76 16 43 H 0.05 1.26 7.20 -51.93 -0.37 0.89 16 44 H 0.05 1.27 7.57 -51.92 -0.39 0.88 16 45 H 0.27 7.61 8.31 -40.82 -0.34 7.27 16 LS Contribution 391.19 15.07 5.90 5.90 Total: -1.00 -35.94 391.19 -10.47 -46.42 By element: Atomic # 1 Polarization: 8.75 SS G_CDS: -5.75 Total: 3.00 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: -5.96 Total: 6.69 kcal Atomic # 7 Polarization: -75.12 SS G_CDS: 0.18 Total: -74.94 kcal Atomic # 8 Polarization: -3.26 SS G_CDS: -0.18 Total: -3.43 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -4.67 Total: 16.37 kcal Total LS contribution 5.90 Total: 5.90 kcal Total: -35.94 -10.47 -46.42 kcal The number of atoms in the molecule is 45 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097199854.mol2 45 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 167.824 kcal (2) G-P(sol) polarization free energy of solvation -35.944 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 131.880 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.417 kcal (6) G-S(sol) free energy of system = (1) + (5) 121.406 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds