Wall clock time and date at job start Tue Mar 31 2020 06:16:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08998 * 109.60737 * 2 1 4 4 C 1.52256 * 109.61108 * 120.34851 * 2 1 3 5 5 C 1.39013 * 124.27404 * 317.14752 * 4 2 1 6 6 C 1.33015 * 115.65961 * 179.91799 * 5 4 2 7 7 S 1.75794 * 109.60778 * 0.02562 * 6 5 4 8 8 C 1.34799 * 122.07282 * 137.10173 * 4 2 1 9 9 C 1.51404 * 123.96701 * 0.11960 * 8 4 2 10 10 C 1.53361 * 108.07626 * 15.47637 * 9 8 4 11 11 N 1.46910 * 109.60821 * 239.48438 * 2 1 3 12 12 C 1.38113 * 110.99959 * 311.73768 * 11 2 1 13 13 N 1.32855 * 120.81278 * 323.74152 * 12 11 2 14 14 C 1.32124 * 121.18824 * 179.79791 * 13 12 11 15 15 N 1.31505 * 122.64680 * 0.47551 * 14 13 12 16 16 C 1.33189 * 120.68486 * 359.77261 * 15 14 13 17 17 C 1.40816 * 120.80633 * 144.01781 * 12 11 2 18 18 C 1.41167 * 134.69974 * 359.95454 * 17 12 11 19 19 N 1.30253 * 108.46452 * 180.02562 * 18 17 12 20 20 N 1.36315 * 134.62062 * 180.02562 * 16 15 14 21 21 C 1.46508 * 125.87145 * 0.02562 * 20 16 15 22 22 C 1.50699 * 109.47023 * 270.02266 * 21 20 16 23 23 H 1.08004 * 119.99750 * 0.02562 * 22 21 20 24 24 C 1.37878 * 120.00220 * 179.97438 * 22 21 20 25 25 N 1.31510 * 119.99900 * 180.02562 * 24 22 21 26 26 Si 1.86799 * 119.99576 * 0.02562 * 24 22 21 27 27 H 1.48497 * 109.47524 * 90.00204 * 26 24 22 28 28 H 1.48510 * 109.46712 * 209.99749 * 26 24 22 29 29 H 1.48495 * 109.47161 * 329.99414 * 26 24 22 30 30 H 1.08995 * 109.47077 * 304.77720 * 1 2 3 31 31 H 1.09000 * 109.47328 * 64.78072 * 1 2 3 32 32 H 1.09001 * 109.47269 * 184.77668 * 1 2 3 33 33 H 1.07996 * 122.16842 * 359.90148 * 5 4 2 34 34 H 1.07999 * 125.19837 * 179.97438 * 6 5 4 35 35 H 1.09000 * 109.74072 * 255.83444 * 9 8 4 36 36 H 1.08993 * 109.74454 * 135.11906 * 9 8 4 37 37 H 1.08996 * 109.53471 * 191.32501 * 10 9 8 38 38 H 1.09001 * 109.59872 * 71.12477 * 10 9 8 39 39 H 1.08005 * 118.68036 * 180.27034 * 14 13 12 40 40 H 1.07991 * 125.76653 * 0.06137 * 18 17 12 41 41 H 1.08994 * 109.46891 * 30.02499 * 21 20 16 42 42 H 1.09002 * 109.46946 * 150.02668 * 21 20 16 43 43 H 0.97003 * 120.00005 * 180.02562 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8958 1.0268 0.0000 4 6 2.0411 -0.7247 1.2377 5 6 1.5105 -0.5659 2.5128 6 6 2.0884 -1.2853 3.4708 7 16 3.3920 -2.2439 2.7837 8 6 3.0695 -1.5944 1.1844 9 6 3.8196 -1.9407 -0.0844 10 6 3.4811 -0.8822 -1.1413 11 7 2.0230 -0.7027 -1.1922 12 6 1.3805 -1.9146 -1.3535 13 7 1.0433 -2.6515 -0.3007 14 6 0.4250 -3.8100 -0.4462 15 7 0.1160 -4.3062 -1.6242 16 6 0.4165 -3.6446 -2.7405 17 6 1.0721 -2.4020 -2.6381 18 6 1.2664 -1.9273 -3.9533 19 7 0.7737 -2.8011 -4.7842 20 7 0.2371 -3.8805 -4.0710 21 6 -0.4067 -5.0600 -4.6547 22 6 0.6294 -6.1248 -4.9066 23 1 1.6640 -5.9415 -4.6566 24 6 0.2566 -7.3335 -5.4554 25 7 1.1608 -8.2629 -5.6748 26 14 -1.5329 -7.6508 -5.8871 27 1 -1.7890 -7.2197 -7.2848 28 1 -1.8242 -9.1011 -5.7552 29 1 -2.4081 -6.8843 -4.9643 30 1 -0.3633 0.5861 0.8441 31 1 -0.3634 0.4379 -0.9297 32 1 -0.3634 -1.0241 0.0856 33 1 0.6830 0.0987 2.7125 34 1 1.8012 -1.2805 4.5119 35 1 3.5115 -2.9249 -0.4373 36 1 4.8922 -1.9375 0.1094 37 1 3.8419 -1.2115 -2.1156 38 1 3.9556 0.0629 -0.8772 39 1 0.1657 -4.3738 0.4377 40 1 1.7434 -0.9973 -4.2247 41 1 -1.1596 -5.4415 -3.9650 42 1 -0.8823 -4.7858 -5.5964 43 1 0.8986 -9.1131 -6.0612 RHF calculation, no. of doubly occupied orbitals= 62 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200202.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:16:27 Heat of formation + Delta-G solvation = 183.192798 kcal Electronic energy + Delta-G solvation = -29519.110602 eV Core-core repulsion = 25693.817002 eV Total energy + Delta-G solvation = -3825.293600 eV No. of doubly occupied orbitals = 62 Molecular weight (most abundant/longest-lived isotopes) = 355.116 amu Computer time = 0.78 seconds Orbital eigenvalues (eV) -41.93013 -40.35051 -38.16545 -36.39955 -33.90595 -33.20719 -32.52525 -31.56706 -30.91490 -29.35061 -27.80827 -27.29495 -25.07908 -23.77261 -23.47714 -22.56046 -22.26138 -21.54498 -19.84396 -18.34541 -17.80952 -17.39638 -17.16180 -16.85175 -16.40910 -15.78547 -15.29996 -14.84110 -14.75414 -14.38549 -14.24104 -13.89569 -13.74168 -13.55982 -13.42176 -12.95494 -12.78641 -12.52716 -12.44715 -12.15650 -12.07101 -11.92130 -11.71576 -11.46020 -11.28523 -11.21343 -11.12999 -10.88052 -10.77290 -10.59308 -10.27591 -10.15226 -9.71119 -9.11426 -8.96282 -8.77582 -8.58192 -8.46790 -8.14976 -7.99511 -6.26254 -4.29277 0.88724 1.05301 1.64434 1.66866 2.01853 2.72545 2.77126 2.91288 3.17415 3.24248 3.25806 3.41148 4.11013 4.22595 4.34114 4.55315 4.59253 4.61186 4.73449 4.83763 4.99825 5.05194 5.07868 5.12590 5.17168 5.29202 5.30678 5.42368 5.53006 5.57384 5.61297 5.68046 5.74501 5.82097 6.11977 6.13787 6.16059 6.31578 6.42023 6.47438 6.48593 6.62234 6.81800 7.07906 7.17091 7.26783 7.55991 8.00771 8.25742 8.55046 8.74886 9.28374 10.86401 Molecular weight = 355.12amu Principal moments of inertia in cm(-1) A = 0.017153 B = 0.003059 C = 0.002915 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1631.981407 B = 9151.985703 C = 9602.144212 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.155 3.845 3 H 0.100 0.900 4 C -0.108 4.108 5 C -0.111 4.111 6 C -0.223 4.223 7 S 0.087 5.913 8 C -0.149 4.149 9 C -0.082 4.082 10 C 0.067 3.933 11 N -0.477 5.477 12 C 0.426 3.574 13 N -0.566 5.566 14 C 0.336 3.664 15 N -0.524 5.524 16 C 0.347 3.653 17 C -0.267 4.267 18 C 0.080 3.920 19 N -0.232 5.232 20 N -0.334 5.334 21 C 0.237 3.763 22 C -0.539 4.539 23 H 0.078 0.922 24 C 0.080 3.920 25 N -0.887 5.887 26 Si 0.874 3.126 27 H -0.270 1.270 28 H -0.279 1.279 29 H -0.263 1.263 30 H 0.063 0.937 31 H 0.062 0.938 32 H 0.069 0.931 33 H 0.132 0.868 34 H 0.158 0.842 35 H 0.080 0.920 36 H 0.083 0.917 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.192 0.808 40 H 0.193 0.807 41 H 0.055 0.945 42 H 0.048 0.952 43 H 0.269 0.731 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.634 18.861 16.083 24.927 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.045 3.955 3 H 0.118 0.882 4 C -0.121 4.121 5 C -0.142 4.142 6 C -0.358 4.358 7 S 0.352 5.648 8 C -0.267 4.267 9 C -0.122 4.122 10 C -0.060 4.060 11 N -0.196 5.196 12 C 0.179 3.821 13 N -0.287 5.287 14 C 0.042 3.958 15 N -0.245 5.245 16 C 0.098 3.902 17 C -0.282 4.282 18 C -0.116 4.116 19 N -0.047 5.047 20 N -0.121 5.121 21 C 0.119 3.881 22 C -0.578 4.578 23 H 0.096 0.904 24 C -0.124 4.124 25 N -0.524 5.524 26 Si 0.700 3.300 27 H -0.196 1.196 28 H -0.204 1.204 29 H -0.188 1.188 30 H 0.082 0.918 31 H 0.081 0.919 32 H 0.088 0.912 33 H 0.150 0.850 34 H 0.176 0.824 35 H 0.099 0.901 36 H 0.102 0.898 37 H 0.112 0.888 38 H 0.112 0.888 39 H 0.209 0.791 40 H 0.210 0.790 41 H 0.073 0.927 42 H 0.066 0.934 43 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 3.028 16.852 15.575 23.146 hybrid contribution -1.409 0.518 0.095 1.504 sum 1.619 17.369 15.670 23.450 Atomic orbital electron populations 1.21968 0.93152 1.03540 1.02011 1.20615 0.95693 0.96006 0.83168 0.88230 1.19839 0.96389 1.00304 0.95583 1.19785 1.01351 1.01552 0.91541 1.25218 1.02954 1.04544 1.03098 1.84062 1.34360 1.46113 1.00231 1.24337 1.02402 1.02448 0.97464 1.20929 0.99479 1.00517 0.91294 1.22309 0.84854 0.99514 0.99371 1.59938 1.05558 1.15555 1.38598 1.19289 0.88486 0.87353 0.87012 1.68848 1.18624 1.08332 1.32923 1.24558 0.89169 0.88692 0.93377 1.67514 1.24727 1.35443 0.96790 1.19048 0.93503 0.90140 0.87547 1.19790 1.13276 0.99996 0.95179 1.23618 1.00013 0.99342 0.88621 1.76999 1.11798 0.95226 1.20696 1.49013 1.45998 1.17209 0.99855 1.20105 0.93771 0.79460 0.94799 1.21088 0.95445 0.97570 1.43668 0.90424 1.24767 0.97735 0.95362 0.94520 1.69866 1.33627 1.05983 1.42877 0.86877 0.85019 0.78447 0.79627 1.19580 1.20436 1.18808 0.91759 0.91854 0.91180 0.85044 0.82439 0.90127 0.89843 0.88830 0.88844 0.79127 0.79026 0.92720 0.93379 0.92094 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.53 8.30 37.16 0.31 -1.22 16 2 C 0.16 1.56 3.10 -68.08 -0.21 1.35 16 3 H 0.10 0.83 8.14 -51.93 -0.42 0.41 16 4 C -0.11 -1.16 4.09 -104.78 -0.43 -1.59 16 5 C -0.11 -1.09 9.45 -41.11 -0.39 -1.48 16 6 C -0.22 -2.13 11.21 28.92 0.32 -1.81 16 7 S 0.09 0.91 23.32 -107.50 -2.51 -1.59 16 8 C -0.15 -1.68 5.21 -35.18 -0.18 -1.86 16 9 C -0.08 -0.89 5.70 -27.35 -0.16 -1.05 16 10 C 0.07 0.66 5.98 -3.59 -0.02 0.64 16 11 N -0.48 -5.42 4.84 -165.38 -0.80 -6.22 16 12 C 0.43 6.16 3.53 -154.85 -0.55 5.61 16 13 N -0.57 -8.26 4.80 -13.62 -0.07 -8.33 16 14 C 0.34 5.40 12.24 -92.12 -1.13 4.27 16 15 N -0.52 -10.49 10.47 -13.97 -0.15 -10.64 16 16 C 0.35 7.25 8.04 -156.24 -1.26 5.99 16 17 C -0.27 -4.62 6.17 -106.82 -0.66 -5.27 16 18 C 0.08 1.32 12.05 -17.11 -0.21 1.11 16 19 N -0.23 -4.76 12.45 30.80 0.38 -4.37 16 20 N -0.33 -7.62 3.63 -61.64 -0.22 -7.84 16 21 C 0.24 5.84 5.26 -5.19 -0.03 5.81 16 22 C -0.54 -15.44 9.94 -34.44 -0.34 -15.78 16 23 H 0.08 2.50 8.06 -52.48 -0.42 2.07 16 24 C 0.08 2.29 5.47 -17.82 -0.10 2.19 16 25 N -0.89 -26.75 13.96 55.43 0.77 -25.97 16 26 Si 0.87 20.67 27.47 -169.99 -4.67 16.00 16 27 H -0.27 -6.23 7.11 56.52 0.40 -5.83 16 28 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 29 H -0.26 -5.95 6.54 56.52 0.37 -5.58 16 30 H 0.06 0.53 7.44 -51.93 -0.39 0.15 16 31 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 32 H 0.07 0.90 6.02 -51.93 -0.31 0.58 16 33 H 0.13 1.08 7.41 -52.49 -0.39 0.69 16 34 H 0.16 1.17 8.06 -52.49 -0.42 0.75 16 35 H 0.08 1.11 7.14 -51.93 -0.37 0.74 16 36 H 0.08 0.77 8.14 -51.93 -0.42 0.35 16 37 H 0.09 0.89 8.14 -51.93 -0.42 0.47 16 38 H 0.09 0.71 8.06 -51.93 -0.42 0.29 16 39 H 0.19 2.48 8.06 -52.48 -0.42 2.05 16 40 H 0.19 2.30 8.06 -52.49 -0.42 1.88 16 41 H 0.06 1.34 7.20 -51.93 -0.37 0.97 16 42 H 0.05 1.14 7.57 -51.93 -0.39 0.75 16 43 H 0.27 7.52 8.31 -40.82 -0.34 7.18 16 LS Contribution 361.38 15.07 5.45 5.45 Total: -1.00 -32.55 361.38 -12.02 -44.58 By element: Atomic # 1 Polarization: 7.23 SS G_CDS: -5.19 Total: 2.04 kcal Atomic # 6 Polarization: 1.93 SS G_CDS: -5.02 Total: -3.09 kcal Atomic # 7 Polarization: -63.30 SS G_CDS: -0.08 Total: -63.38 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -4.67 Total: 16.00 kcal Atomic # 16 Polarization: 0.91 SS G_CDS: -2.51 Total: -1.59 kcal Total LS contribution 5.45 Total: 5.45 kcal Total: -32.55 -12.02 -44.58 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200202.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.768 kcal (2) G-P(sol) polarization free energy of solvation -32.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 195.215 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -12.022 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.576 kcal (6) G-S(sol) free energy of system = (1) + (5) 183.193 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.78 seconds