Wall clock time and date at job start Tue Mar 31 2020 05:26:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 S 1.81403 * 1 3 3 O 1.42093 * 110.54052 * 2 1 4 4 O 1.42100 * 110.54299 * 223.24470 * 2 1 3 5 5 N 1.65596 * 104.44692 * 111.62304 * 2 1 3 6 6 C 1.46508 * 120.00258 * 64.99926 * 5 2 1 7 7 C 1.52996 * 109.47041 * 165.00171 * 6 5 2 8 8 C 1.52999 * 109.47155 * 180.02562 * 7 6 5 9 9 N 1.46494 * 109.47484 * 179.97438 * 8 7 6 10 10 C 1.38108 * 120.00075 * 179.97438 * 9 8 7 11 11 N 1.32858 * 120.81367 * 0.02562 * 10 9 8 12 12 C 1.32124 * 121.19386 * 179.97438 * 11 10 9 13 13 N 1.31512 * 122.64693 * 0.02562 * 12 11 10 14 14 C 1.33199 * 120.68272 * 359.97438 * 13 12 11 15 15 C 1.40820 * 120.81271 * 179.97438 * 10 9 8 16 16 C 1.41168 * 134.69620 * 0.02562 * 15 10 9 17 17 N 1.30249 * 108.46928 * 180.28266 * 16 15 10 18 18 N 1.36308 * 134.61952 * 180.02562 * 14 13 12 19 19 C 1.46505 * 125.86988 * 359.97438 * 18 14 13 20 20 C 1.50705 * 109.47150 * 90.00495 * 19 18 14 21 21 H 1.08007 * 119.99657 * 359.97438 * 20 19 18 22 22 C 1.37874 * 120.00005 * 179.97438 * 20 19 18 23 23 N 1.31513 * 120.00074 * 0.02562 * 22 20 19 24 24 Si 1.86797 * 119.99770 * 179.97438 * 22 20 19 25 25 H 1.48498 * 109.47226 * 60.00056 * 24 22 20 26 26 H 1.48503 * 109.47295 * 180.02562 * 24 22 20 27 27 H 1.48504 * 109.47161 * 300.00138 * 24 22 20 28 28 H 1.08996 * 109.47437 * 308.37835 * 1 2 3 29 29 H 1.08997 * 109.47097 * 68.37886 * 1 2 3 30 30 H 1.09001 * 109.47112 * 188.37742 * 1 2 3 31 31 H 0.97002 * 120.00625 * 245.00145 * 5 2 1 32 32 H 1.08994 * 109.47145 * 45.00026 * 6 5 2 33 33 H 1.08999 * 109.46880 * 285.00011 * 6 5 2 34 34 H 1.08997 * 109.47749 * 59.99862 * 7 6 5 35 35 H 1.08999 * 109.47153 * 299.99673 * 7 6 5 36 36 H 1.08997 * 109.47189 * 59.99171 * 8 7 6 37 37 H 1.09003 * 109.47007 * 299.99799 * 8 7 6 38 38 H 0.96999 * 120.00185 * 359.97438 * 9 8 7 39 39 H 1.08001 * 118.67895 * 180.02562 * 12 11 10 40 40 H 1.08002 * 125.76328 * 0.02562 * 16 15 10 41 41 H 1.09004 * 109.46916 * 209.99962 * 19 18 14 42 42 H 1.08998 * 109.47257 * 329.99995 * 19 18 14 43 43 H 0.96999 * 120.00033 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 16 1.8140 0.0000 0.0000 3 8 2.3126 1.3306 0.0000 4 8 2.3127 -0.9693 -0.9116 5 7 2.2272 -0.5909 1.4908 6 6 1.8907 -1.9706 1.8509 7 6 2.6873 -2.3829 3.0903 8 6 2.3364 -3.8239 3.4660 9 7 3.0997 -4.2190 4.6524 10 6 2.9477 -5.4859 5.1810 11 7 2.1143 -6.3593 4.6263 12 6 1.9635 -7.5733 5.1254 13 7 2.6177 -7.9900 6.1874 14 6 3.4765 -7.1881 6.8148 15 6 3.6732 -5.8838 6.3204 16 6 4.6212 -5.2616 7.1612 17 7 4.9773 -6.1116 8.0816 18 7 4.2842 -7.3159 7.9054 19 6 4.4111 -8.5103 8.7443 20 6 5.5042 -9.3931 8.1993 21 1 6.0495 -9.0945 7.3161 22 6 5.8082 -10.5818 8.8282 23 7 5.1438 -10.9456 9.9034 24 14 7.1626 -11.6763 8.1523 25 1 8.4473 -10.9316 8.1527 26 1 7.2915 -12.8869 9.0027 27 1 6.8254 -12.0809 6.7638 28 1 -0.3634 0.6380 0.8056 29 1 -0.3633 0.3786 -0.9553 30 1 -0.3633 -1.0167 0.1497 31 1 2.6919 -0.0237 2.1257 32 1 2.1393 -2.6334 1.0221 33 1 0.8241 -2.0405 2.0647 34 1 2.4388 -1.7202 3.9192 35 1 3.7539 -2.3131 2.8765 36 1 2.5853 -4.4865 2.6370 37 1 1.2699 -3.8943 3.6797 38 1 3.7118 -3.5909 5.0667 39 1 1.2753 -8.2507 4.6418 40 1 4.9921 -4.2527 7.0562 41 1 4.6580 -8.2136 9.7637 42 1 3.4681 -9.0570 8.7433 43 1 5.3579 -11.7817 10.3460 RHF calculation, no. of doubly occupied orbitals= 63 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097200365.mol2 43 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:26:02 Heat of formation + Delta-G solvation = 42.374340 kcal Electronic energy + Delta-G solvation = -27551.018587 eV Core-core repulsion = 23374.195288 eV Total energy + Delta-G solvation = -4176.823299 eV No. of doubly occupied orbitals = 63 Molecular weight (most abundant/longest-lived isotopes) = 354.126 amu Computer time = 0.79 seconds Orbital eigenvalues (eV) -41.40132 -38.59774 -37.70351 -37.35341 -36.45760 -35.82729 -33.79110 -32.70476 -31.35642 -31.12861 -30.05168 -29.16026 -27.27044 -25.41123 -23.98990 -23.29173 -22.53975 -21.94999 -20.12301 -19.94609 -18.21672 -17.77611 -17.53866 -16.91007 -16.78465 -16.67177 -16.29650 -16.08474 -15.56080 -15.12320 -14.97023 -14.49258 -14.19915 -14.10005 -13.84420 -13.74335 -13.69247 -13.33683 -13.22018 -13.01643 -12.61037 -12.50747 -12.20111 -12.13893 -11.94205 -11.89755 -11.65230 -11.54484 -11.15830 -10.99089 -10.93458 -10.75553 -10.28963 -10.11152 -10.07640 -9.85866 -9.28872 -8.70573 -8.59671 -8.24502 -7.66868 -6.22191 -4.28795 -0.27917 1.28324 1.91664 2.14175 2.89976 3.00367 3.09345 3.26386 3.27782 3.29425 3.34416 3.65245 4.13106 4.28346 4.30586 4.34672 4.37308 4.43290 4.45354 4.63902 4.72580 4.92040 4.94798 5.03242 5.10209 5.10534 5.13239 5.18095 5.37037 5.51791 5.64383 5.68539 5.73686 6.29070 6.37821 6.65271 6.87451 7.01993 7.09097 7.20246 7.47636 7.71014 7.88945 7.90985 8.20951 8.70763 8.80708 9.36228 10.85973 Molecular weight = 354.13amu Principal moments of inertia in cm(-1) A = 0.025441 B = 0.001581 C = 0.001579 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1100.305129 B =17711.188457 C =17727.981959 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.674 4.674 2 S 2.616 3.384 3 O -0.960 6.960 4 O -0.955 6.955 5 N -1.120 6.120 6 C 0.117 3.883 7 C -0.141 4.141 8 C 0.132 3.868 9 N -0.709 5.709 10 C 0.508 3.492 11 N -0.618 5.618 12 C 0.366 3.634 13 N -0.554 5.554 14 C 0.363 3.637 15 C -0.338 4.338 16 C 0.068 3.932 17 N -0.243 5.243 18 N -0.332 5.332 19 C 0.264 3.736 20 C -0.534 4.534 21 H 0.061 0.939 22 C 0.067 3.933 23 N -0.891 5.891 24 Si 0.908 3.092 25 H -0.275 1.275 26 H -0.283 1.283 27 H -0.274 1.274 28 H 0.129 0.871 29 H 0.129 0.871 30 H 0.129 0.871 31 H 0.419 0.581 32 H 0.087 0.913 33 H 0.069 0.931 34 H 0.078 0.922 35 H 0.080 0.920 36 H 0.072 0.928 37 H 0.071 0.929 38 H 0.409 0.591 39 H 0.195 0.805 40 H 0.182 0.818 41 H 0.054 0.946 42 H 0.060 0.940 43 H 0.268 0.732 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.642 22.688 -17.003 30.649 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.824 4.824 2 S 2.708 3.292 3 O -0.951 6.951 4 O -0.945 6.945 5 N -0.880 5.880 6 C -0.010 4.010 7 C -0.181 4.181 8 C 0.007 3.993 9 N -0.342 5.342 10 C 0.256 3.744 11 N -0.349 5.349 12 C 0.073 3.927 13 N -0.278 5.278 14 C 0.115 3.885 15 C -0.356 4.356 16 C -0.127 4.127 17 N -0.059 5.059 18 N -0.118 5.118 19 C 0.147 3.853 20 C -0.573 4.573 21 H 0.079 0.921 22 C -0.137 4.137 23 N -0.529 5.529 24 Si 0.735 3.265 25 H -0.200 1.200 26 H -0.209 1.209 27 H -0.200 1.200 28 H 0.148 0.852 29 H 0.147 0.853 30 H 0.148 0.852 31 H 0.253 0.747 32 H 0.105 0.895 33 H 0.087 0.913 34 H 0.096 0.904 35 H 0.099 0.901 36 H 0.091 0.909 37 H 0.089 0.911 38 H 0.246 0.754 39 H 0.212 0.788 40 H 0.199 0.801 41 H 0.072 0.928 42 H 0.078 0.922 43 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -11.061 21.674 -16.959 29.660 hybrid contribution 0.538 0.289 0.212 0.646 sum -10.523 21.962 -16.747 29.556 Atomic orbital electron populations 1.30529 1.28352 1.11786 1.11689 1.04676 0.77549 0.73800 0.73219 1.93630 1.77996 1.37762 1.85680 1.93636 1.76938 1.61772 1.62132 1.55578 1.74419 1.21352 1.36693 1.21216 0.99279 0.81710 0.98774 1.21970 1.01707 0.96726 0.97657 1.21188 0.96505 0.93694 0.87882 1.44215 1.47418 1.11319 1.31278 1.17875 0.86066 0.85394 0.85068 1.67937 1.25292 1.05394 1.36261 1.24416 0.92327 0.88924 0.87075 1.67519 1.11778 1.36617 1.11912 1.18944 0.91165 0.89185 0.89217 1.19618 1.11764 0.99414 1.04762 1.23364 0.96570 0.99504 0.93286 1.76945 1.15414 0.91610 1.21890 1.49474 1.29124 1.11838 1.21367 1.19799 0.99398 0.76704 0.89419 1.21206 1.18503 1.04531 1.13061 0.92109 1.24894 0.96791 0.97275 0.94702 1.69906 1.40622 1.23503 1.18860 0.86398 0.81661 0.79471 0.79020 1.20030 1.20886 1.19956 0.85205 0.85292 0.85234 0.74651 0.89513 0.91270 0.90361 0.90112 0.90942 0.91084 0.75423 0.78836 0.80095 0.92807 0.92229 0.92204 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.67 -1.07 10.89 101.05 1.10 0.03 16 2 S 2.62 12.77 6.10 -107.50 -0.66 12.11 16 3 O -0.96 -8.29 18.08 -57.54 -1.04 -9.33 16 4 O -0.95 -8.61 17.50 -57.54 -1.01 -9.62 16 5 N -1.12 -3.75 5.89 -10.61 -0.06 -3.82 16 6 C 0.12 0.38 6.13 -4.04 -0.02 0.36 16 7 C -0.14 -0.54 5.47 -26.73 -0.15 -0.69 16 8 C 0.13 0.90 5.73 -4.04 -0.02 0.88 16 9 N -0.71 -6.68 5.68 -60.09 -0.34 -7.02 16 10 C 0.51 7.35 7.55 -154.85 -1.17 6.18 16 11 N -0.62 -9.27 9.69 -13.62 -0.13 -9.40 16 12 C 0.37 5.94 12.24 -92.11 -1.13 4.81 16 13 N -0.55 -11.45 10.47 -13.97 -0.15 -11.59 16 14 C 0.36 7.86 8.04 -156.24 -1.26 6.61 16 15 C -0.34 -5.91 6.14 -106.82 -0.66 -6.57 16 16 C 0.07 1.11 11.87 -17.11 -0.20 0.90 16 17 N -0.24 -5.11 12.45 30.80 0.38 -4.72 16 18 N -0.33 -7.85 3.63 -61.64 -0.22 -8.07 16 19 C 0.26 6.99 6.19 -5.19 -0.03 6.96 16 20 C -0.53 -15.21 9.39 -34.44 -0.32 -15.53 16 21 H 0.06 1.78 7.81 -52.48 -0.41 1.37 16 22 C 0.07 1.87 5.46 -17.82 -0.10 1.78 16 23 N -0.89 -25.67 13.29 55.43 0.74 -24.94 16 24 Si 0.91 21.66 29.54 -169.99 -5.02 16.64 16 25 H -0.27 -6.49 7.11 56.52 0.40 -6.09 16 26 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 27 H -0.27 -6.52 7.11 56.52 0.40 -6.11 16 28 H 0.13 0.05 8.14 -51.93 -0.42 -0.37 16 29 H 0.13 0.11 8.14 -51.93 -0.42 -0.31 16 30 H 0.13 0.05 8.14 -51.92 -0.42 -0.37 16 31 H 0.42 0.94 8.62 -34.47 -0.30 0.64 16 32 H 0.09 0.35 7.69 -51.93 -0.40 -0.05 16 33 H 0.07 0.09 8.14 -51.93 -0.42 -0.34 16 34 H 0.08 0.22 8.14 -51.93 -0.42 -0.20 16 35 H 0.08 0.33 8.14 -51.93 -0.42 -0.09 16 36 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.07 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.41 2.92 8.34 -40.82 -0.34 2.58 16 39 H 0.20 2.34 8.06 -52.49 -0.42 1.92 16 40 H 0.18 1.95 8.06 -52.49 -0.42 1.52 16 41 H 0.05 1.47 8.14 -51.93 -0.42 1.05 16 42 H 0.06 1.65 8.14 -51.93 -0.42 1.23 16 43 H 0.27 7.28 8.31 -40.82 -0.34 6.94 16 LS Contribution 387.04 15.07 5.83 5.83 Total: -1.00 -39.58 387.04 -11.29 -50.87 By element: Atomic # 1 Polarization: 3.00 SS G_CDS: -5.66 Total: -2.65 kcal Atomic # 6 Polarization: 9.67 SS G_CDS: -3.96 Total: 5.71 kcal Atomic # 7 Polarization: -69.78 SS G_CDS: 0.21 Total: -69.56 kcal Atomic # 8 Polarization: -16.90 SS G_CDS: -2.05 Total: -18.95 kcal Atomic # 14 Polarization: 21.66 SS G_CDS: -5.02 Total: 16.64 kcal Atomic # 16 Polarization: 12.77 SS G_CDS: -0.66 Total: 12.11 kcal Total LS contribution 5.83 Total: 5.83 kcal Total: -39.58 -11.29 -50.87 kcal The number of atoms in the molecule is 43 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097200365.mol2 43 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 93.247 kcal (2) G-P(sol) polarization free energy of solvation -39.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 53.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.292 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -50.872 kcal (6) G-S(sol) free energy of system = (1) + (5) 42.374 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.79 seconds