Wall clock time and date at job start Tue Mar 31 2020 05:52:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.45191 * 1 3 3 C 1.34232 * 117.00320 * 2 1 4 4 O 1.20822 * 119.99334 * 0.02562 * 3 2 1 5 5 C 1.50699 * 120.00161 * 179.97438 * 3 2 1 6 6 C 1.53001 * 109.46955 * 180.02562 * 5 3 2 7 7 H 1.09000 * 109.46927 * 305.00136 * 6 5 3 8 8 N 1.46497 * 109.47071 * 64.99969 * 6 5 3 9 9 C 1.34783 * 120.00084 * 204.99781 * 8 6 5 10 10 O 1.21690 * 119.99535 * 359.72843 * 9 8 6 11 11 C 1.46367 * 120.00162 * 179.97438 * 9 8 6 12 12 H 1.08006 * 120.00065 * 353.66579 * 11 9 8 13 13 C 1.40043 * 120.00227 * 173.66232 * 11 9 8 14 14 N 1.30673 * 120.00127 * 6.15629 * 13 11 9 15 15 Si 1.86806 * 120.00256 * 186.15253 * 13 11 9 16 16 H 1.48491 * 109.46959 * 94.98554 * 15 13 11 17 17 H 1.48503 * 109.46978 * 214.98626 * 15 13 11 18 18 H 1.48502 * 109.47036 * 334.98411 * 15 13 11 19 19 C 1.50698 * 109.47186 * 184.99939 * 6 5 3 20 20 C 1.38262 * 119.99668 * 279.73184 * 19 6 5 21 21 C 1.38224 * 120.02034 * 179.72662 * 20 19 6 22 22 C 1.38235 * 120.00814 * 0.54212 * 21 20 19 23 23 C 1.38302 * 119.99062 * 359.72492 * 22 21 20 24 24 Br 1.89106 * 120.00924 * 180.02562 * 23 22 21 25 25 C 1.38193 * 119.99502 * 99.99593 * 19 6 5 26 26 H 1.09003 * 109.47228 * 179.97438 * 1 2 3 27 27 H 1.08993 * 109.47210 * 299.99545 * 1 2 3 28 28 H 1.09004 * 109.47387 * 59.99995 * 1 2 3 29 29 H 1.08994 * 109.47249 * 60.00263 * 5 3 2 30 30 H 1.09004 * 109.46950 * 300.00258 * 5 3 2 31 31 H 0.96998 * 120.00093 * 24.99885 * 8 6 5 32 32 H 0.96994 * 120.00710 * 180.02562 * 14 13 11 33 33 H 1.08000 * 119.98615 * 359.97438 * 20 19 6 34 34 H 1.08004 * 119.99245 * 180.26773 * 21 20 19 35 35 H 1.08003 * 120.00485 * 179.70759 * 22 21 20 36 36 H 1.08002 * 120.00809 * 0.02766 * 25 19 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4519 0.0000 0.0000 3 6 2.0614 1.1960 0.0000 4 8 1.4033 2.2092 0.0005 5 6 3.5663 1.2748 0.0006 6 6 4.0001 2.7420 0.0011 7 1 3.5382 3.2578 -0.8408 8 7 3.5783 3.3755 1.2529 9 6 3.3815 4.7080 1.3009 10 8 3.5590 5.3855 0.3058 11 6 2.9595 5.3409 2.5515 12 1 2.7071 4.7315 3.4067 13 6 2.8832 6.7365 2.6391 14 7 3.0713 7.4693 1.5736 15 14 2.5126 7.5506 4.2790 16 1 3.7857 7.9327 4.9409 17 1 1.6879 8.7648 4.0536 18 1 1.7693 6.6014 5.1461 19 6 5.4999 2.8225 -0.1221 20 6 6.2964 2.6279 0.9912 21 6 7.6722 2.6960 0.8776 22 6 8.2521 2.9698 -0.3470 23 6 7.4556 3.1700 -1.4598 24 35 8.2484 3.5438 -3.1355 25 6 6.0788 3.0962 -1.3468 26 1 -0.3634 -1.0277 -0.0005 27 1 -0.3633 0.5137 0.8900 28 1 -0.3634 0.5138 -0.8900 29 1 3.9564 0.7806 -0.8891 30 1 3.9556 0.7808 0.8908 31 1 3.4407 2.8360 2.0471 32 1 3.0188 8.4359 1.6343 33 1 5.8434 2.4186 1.9490 34 1 8.2941 2.5396 1.7466 35 1 9.3270 3.0276 -0.4348 36 1 5.4564 3.2528 -2.2154 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000097377892.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:52:32 Heat of formation + Delta-G solvation = -96.358395 kcal Electronic energy + Delta-G solvation = -23233.676054 eV Core-core repulsion = 19536.228202 eV Total energy + Delta-G solvation = -3697.447853 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 355.025 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.38138 -39.28917 -37.29420 -36.22513 -34.46515 -32.40008 -31.96811 -30.84509 -30.11391 -28.92394 -27.53700 -26.18947 -24.11357 -22.30124 -21.30787 -20.48585 -19.30190 -17.61397 -17.30011 -16.53133 -16.37799 -16.26075 -15.46930 -15.14482 -14.85481 -14.24173 -14.05787 -13.61405 -13.34956 -13.24119 -13.16540 -12.83350 -12.36723 -12.18499 -12.02821 -11.89951 -11.39583 -11.15732 -11.08260 -10.88086 -10.80023 -10.66438 -10.61045 -10.40915 -10.21554 -10.19676 -10.13616 -8.82442 -8.67370 -8.46545 -7.59681 -7.54970 -6.15328 -4.59050 1.33544 1.49403 1.76683 2.46843 2.83246 3.15509 3.22601 3.25994 3.82260 4.12325 4.58321 4.66478 4.84076 4.94656 5.04100 5.14506 5.18022 5.22085 5.29722 5.37478 5.53420 5.54611 5.63369 5.66360 5.81834 5.96875 6.10848 6.29872 6.37902 6.52137 6.56866 6.81093 7.03013 7.47253 7.88877 7.99830 8.06496 8.34135 9.06866 9.53099 10.64267 10.83377 Molecular weight = 355.03amu Principal moments of inertia in cm(-1) A = 0.007946 B = 0.004174 C = 0.003047 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3523.118576 B = 6706.649156 C = 9188.204713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.036 3.964 2 O -0.369 6.369 3 C 0.450 3.550 4 O -0.471 6.471 5 C -0.114 4.114 6 C 0.204 3.796 7 H 0.097 0.903 8 N -0.751 5.751 9 C 0.564 3.436 10 O -0.573 6.573 11 C -0.544 4.544 12 H 0.065 0.935 13 C 0.089 3.911 14 N -0.766 5.766 15 Si 0.905 3.095 16 H -0.273 1.273 17 H -0.280 1.280 18 H -0.265 1.265 19 C -0.071 4.071 20 C -0.080 4.080 21 C -0.118 4.118 22 C -0.099 4.099 23 C -0.090 4.090 24 Br -0.065 7.065 25 C -0.075 4.075 26 H 0.096 0.904 27 H 0.063 0.937 28 H 0.060 0.940 29 H 0.111 0.889 30 H 0.107 0.893 31 H 0.378 0.622 32 H 0.267 0.733 33 H 0.128 0.872 34 H 0.128 0.872 35 H 0.126 0.874 36 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.247 -15.497 -4.546 17.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.057 4.057 2 O -0.287 6.287 3 C 0.291 3.709 4 O -0.355 6.355 5 C -0.153 4.153 6 C 0.096 3.904 7 H 0.115 0.885 8 N -0.405 5.405 9 C 0.368 3.632 10 O -0.455 6.455 11 C -0.581 4.581 12 H 0.084 0.916 13 C -0.130 4.130 14 N -0.395 5.395 15 Si 0.729 3.271 16 H -0.199 1.199 17 H -0.205 1.205 18 H -0.190 1.190 19 C -0.074 4.074 20 C -0.099 4.099 21 C -0.137 4.137 22 C -0.119 4.119 23 C -0.169 4.169 24 Br 0.020 6.980 25 C -0.095 4.095 26 H 0.115 0.885 27 H 0.081 0.919 28 H 0.079 0.921 29 H 0.129 0.871 30 H 0.125 0.875 31 H 0.209 0.791 32 H 0.078 0.922 33 H 0.146 0.854 34 H 0.145 0.855 35 H 0.144 0.856 36 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges 7.408 -14.319 -6.007 17.204 hybrid contribution -0.601 0.230 1.607 1.731 sum 6.807 -14.089 -4.400 16.254 Atomic orbital electron populations 1.23191 0.76765 1.03098 1.02691 1.86477 1.23148 1.34098 1.84948 1.23687 0.92089 0.81413 0.73745 1.90831 1.66578 1.35714 1.42366 1.21716 0.87977 0.99500 1.06060 1.19169 0.88310 0.89619 0.93291 0.88488 1.46158 1.75525 1.09556 1.09239 1.18111 0.76908 0.78546 0.89625 1.90604 1.56016 1.61750 1.37112 1.20819 1.48501 0.91474 0.97295 0.91630 1.25667 0.92988 0.97456 0.96938 1.70023 1.35532 1.05622 1.28341 0.86412 0.78784 0.79083 0.82780 1.19867 1.20496 1.18963 1.20417 0.96631 0.97675 0.92629 1.21115 0.93141 0.97011 0.98593 1.21092 0.95072 1.00693 0.96868 1.20992 0.99466 0.99697 0.91723 1.21641 0.95145 1.08479 0.91622 1.96644 1.82336 1.94407 1.24589 1.20959 0.92482 0.97777 0.98304 0.88541 0.91869 0.92077 0.87100 0.87509 0.79090 0.92202 0.85381 0.85456 0.85582 0.85201 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.39 10.56 101.05 1.07 1.46 16 2 O -0.37 -4.83 10.56 -39.26 -0.41 -5.25 16 3 C 0.45 6.95 7.82 36.01 0.28 7.23 16 4 O -0.47 -9.50 15.10 -18.75 -0.28 -9.79 16 5 C -0.11 -1.50 5.33 -27.88 -0.15 -1.64 16 6 C 0.20 3.65 1.73 -69.08 -0.12 3.53 16 7 H 0.10 2.08 7.26 -51.93 -0.38 1.70 16 8 N -0.75 -15.98 3.44 -56.35 -0.19 -16.17 16 9 C 0.56 15.80 7.70 -12.99 -0.10 15.70 16 10 O -0.57 -18.42 14.71 5.20 0.08 -18.34 16 11 C -0.54 -15.40 9.53 -35.64 -0.34 -15.74 16 12 H 0.07 1.71 7.86 -52.48 -0.41 1.30 16 13 C 0.09 2.52 5.49 -17.37 -0.10 2.42 16 14 N -0.77 -23.31 11.85 55.55 0.66 -22.65 16 15 Si 0.90 20.42 29.56 -169.99 -5.03 15.39 16 16 H -0.27 -6.02 7.11 56.52 0.40 -5.61 16 17 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 18 H -0.27 -5.79 7.11 56.52 0.40 -5.39 16 19 C -0.07 -1.18 4.91 -104.63 -0.51 -1.69 16 20 C -0.08 -1.21 9.33 -39.58 -0.37 -1.58 16 21 C -0.12 -1.59 10.05 -39.59 -0.40 -1.99 16 22 C -0.10 -1.35 9.79 -39.56 -0.39 -1.73 16 23 C -0.09 -1.34 6.22 -39.52 -0.25 -1.59 16 24 Br -0.06 -0.87 33.70 -68.01 -2.29 -3.16 16 25 C -0.07 -1.22 9.41 -39.56 -0.37 -1.59 16 26 H 0.10 0.70 8.14 -51.93 -0.42 0.28 16 27 H 0.06 0.71 8.13 -51.93 -0.42 0.29 16 28 H 0.06 0.67 8.13 -51.93 -0.42 0.24 16 29 H 0.11 1.15 8.14 -51.93 -0.42 0.73 16 30 H 0.11 1.13 8.14 -51.93 -0.42 0.71 16 31 H 0.38 7.08 8.58 -40.82 -0.35 6.73 16 32 H 0.27 7.40 8.29 -40.82 -0.34 7.07 16 33 H 0.13 1.80 7.71 -52.49 -0.40 1.39 16 34 H 0.13 1.36 8.06 -52.48 -0.42 0.93 16 35 H 0.13 1.43 8.06 -52.48 -0.42 1.01 16 36 H 0.13 2.05 8.04 -52.49 -0.42 1.63 16 LS Contribution 342.67 15.07 5.16 5.16 Total: -1.00 -36.71 342.67 -8.11 -44.82 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -4.06 Total: 7.20 kcal Atomic # 6 Polarization: 4.52 SS G_CDS: -1.74 Total: 2.78 kcal Atomic # 7 Polarization: -39.29 SS G_CDS: 0.46 Total: -38.82 kcal Atomic # 8 Polarization: -32.75 SS G_CDS: -0.62 Total: -33.37 kcal Atomic # 14 Polarization: 20.42 SS G_CDS: -5.03 Total: 15.39 kcal Atomic # 35 Polarization: -0.87 SS G_CDS: -2.29 Total: -3.16 kcal Total LS contribution 5.16 Total: 5.16 kcal Total: -36.71 -8.11 -44.82 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000097377892.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.543 kcal (2) G-P(sol) polarization free energy of solvation -36.705 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.248 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.816 kcal (6) G-S(sol) free energy of system = (1) + (5) -96.358 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds