Wall clock time and date at job start Tue Mar 31 2020 05:30:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.35903 * 117.00131 * 2 1 4 4 C 1.38811 * 120.01586 * 359.97438 * 3 2 1 5 5 C 1.38174 * 120.09211 * 179.74674 * 4 3 2 6 6 C 1.38155 * 120.12790 * 0.55636 * 5 4 3 7 7 C 1.38931 * 120.03304 * 359.44231 * 6 5 4 8 8 N 1.39669 * 120.04532 * 180.30319 * 7 6 5 9 9 C 1.46900 * 111.00182 * 124.30268 * 8 7 6 10 10 C 1.53239 * 109.34057 * 172.74427 * 9 8 7 11 11 N 1.47074 * 108.51961 * 53.83167 * 10 9 8 12 12 S 1.65604 * 120.88128 * 128.83961 * 11 10 9 13 13 O 1.42099 * 104.27666 * 26.04335 * 12 11 10 14 14 O 1.42099 * 104.27518 * 153.90360 * 12 11 10 15 15 C 1.81398 * 104.44574 * 269.97162 * 12 11 10 16 16 C 1.53002 * 109.46812 * 179.97438 * 15 12 11 17 17 C 1.50703 * 109.47078 * 180.02562 * 16 15 12 18 18 H 1.08004 * 119.99869 * 0.02562 * 17 16 15 19 19 C 1.37874 * 120.00479 * 180.02562 * 17 16 15 20 20 N 1.31517 * 119.99590 * 0.02562 * 19 17 16 21 21 Si 1.86799 * 120.00378 * 179.97438 * 19 17 16 22 22 H 1.48503 * 109.46941 * 0.02562 * 21 19 17 23 23 H 1.48505 * 109.46866 * 120.00328 * 21 19 17 24 24 H 1.48494 * 109.47353 * 240.00065 * 21 19 17 25 25 C 1.47080 * 118.23596 * 308.80801 * 11 10 9 26 26 C 1.46890 * 111.00271 * 359.97438 * 8 7 6 27 27 C 1.38570 * 120.01700 * 179.97438 * 3 2 1 28 28 H 1.09000 * 109.46922 * 300.00105 * 1 2 3 29 29 H 1.08990 * 109.47068 * 60.00221 * 1 2 3 30 30 H 1.08999 * 109.46947 * 180.02562 * 1 2 3 31 31 H 1.08001 * 119.95692 * 0.02562 * 4 3 2 32 32 H 1.08001 * 119.93809 * 180.29247 * 5 4 3 33 33 H 1.08002 * 119.98636 * 179.72632 * 6 5 4 34 34 H 1.08991 * 109.49376 * 292.70588 * 9 8 7 35 35 H 1.09006 * 109.49230 * 52.78594 * 9 8 7 36 36 H 1.09001 * 109.63051 * 294.11956 * 10 9 8 37 37 H 1.08997 * 109.78722 * 173.63502 * 10 9 8 38 38 H 1.08995 * 109.47515 * 299.99976 * 15 12 11 39 39 H 1.09005 * 109.47004 * 60.00112 * 15 12 11 40 40 H 1.08998 * 109.47550 * 299.99946 * 16 15 12 41 41 H 1.09004 * 109.46844 * 60.00875 * 16 15 12 42 42 H 0.97003 * 119.99959 * 180.02562 * 20 19 17 43 43 H 1.08998 * 109.63502 * 291.47816 * 25 11 10 44 44 H 1.09003 * 109.78398 * 170.99069 * 25 11 10 45 45 H 1.09000 * 109.49672 * 307.21548 * 26 8 7 46 46 H 1.09008 * 109.49279 * 67.26951 * 26 8 7 47 47 H 1.07997 * 120.06696 * 0.02562 * 27 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0460 1.2109 0.0000 4 6 1.2903 2.3753 -0.0005 5 6 1.9160 3.6072 0.0047 6 6 3.2954 3.6845 -0.0010 7 6 4.0569 2.5225 -0.0005 8 7 5.4514 2.6003 0.0001 9 6 6.0197 1.8581 1.1334 10 6 7.5454 1.8149 0.9979 11 7 8.0401 3.1915 0.8452 12 16 9.2616 3.7670 1.8040 13 8 9.9881 2.6054 2.1809 14 8 9.8671 4.7890 1.0243 15 6 8.4123 4.4803 3.2394 16 6 9.4464 5.0518 4.2116 17 6 8.7409 5.6438 5.4045 18 1 7.6629 5.6149 5.4635 19 6 9.4716 6.2223 6.4205 20 7 10.7843 6.2579 6.3484 21 14 8.5971 6.9568 7.8988 22 1 7.1301 6.7904 7.7391 23 1 9.0423 6.2614 9.1331 24 1 8.9237 8.4019 7.9996 25 6 7.4216 4.0432 -0.1820 26 6 5.9007 3.9988 -0.0006 27 6 3.4298 1.2838 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0277 0.0005 31 1 0.2118 2.3183 -0.0005 32 1 1.3256 4.5116 0.0091 33 1 3.7821 4.6486 -0.0013 34 1 5.7513 2.3557 2.0652 35 1 5.6258 0.8417 1.1368 36 1 7.8187 1.2282 0.1208 37 1 7.9825 1.3655 1.8896 38 1 7.7454 5.2763 2.9085 39 1 7.8324 3.7052 3.7406 40 1 10.1130 4.2555 4.5426 41 1 10.0265 5.8268 3.7107 42 1 11.2984 6.6646 7.0634 43 1 7.6829 3.6708 -1.1725 44 1 7.7737 5.0689 -0.0719 45 1 5.4207 4.5347 -0.8194 46 1 5.6335 4.4672 0.9468 47 1 4.0193 0.3789 0.0005 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000104106550.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:30:38 Heat of formation + Delta-G solvation = -66.005762 kcal Electronic energy + Delta-G solvation = -29505.348754 eV Core-core repulsion = 25395.073334 eV Total energy + Delta-G solvation = -4110.275420 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 354.145 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.80482 -39.45088 -37.27683 -36.70606 -35.49442 -34.54832 -33.91631 -31.87596 -31.18798 -30.76103 -29.54638 -27.69395 -26.18815 -25.61166 -24.51172 -22.19984 -22.17977 -21.57969 -20.44816 -18.93059 -18.30799 -17.50394 -16.68058 -16.56925 -16.36927 -16.05949 -15.88088 -15.62214 -15.49937 -15.23692 -14.90591 -14.59829 -14.57683 -14.06353 -13.94605 -13.55984 -13.42207 -12.89179 -12.72799 -12.58113 -12.55205 -12.25183 -12.10418 -11.79032 -11.64287 -11.57433 -11.55067 -11.47956 -11.33345 -11.12140 -11.09242 -10.99315 -10.90697 -10.42796 -10.42449 -10.08017 -9.78223 -9.34413 -8.84777 -8.59645 -8.53343 -8.07909 -6.15161 -4.20797 0.69608 1.08163 1.19776 2.83247 2.95455 3.23079 3.30496 3.33679 3.36322 3.67567 4.25641 4.35117 4.43968 4.46807 4.51576 4.71001 4.76611 4.78481 4.80514 4.86825 4.95654 5.00775 5.09616 5.11407 5.19096 5.20103 5.22826 5.27482 5.38705 5.46765 5.56978 5.59303 5.68191 5.74242 5.87227 5.95439 5.97785 6.02810 6.18110 6.26427 6.44851 6.54902 6.71192 6.94249 7.13516 7.26927 7.32824 7.77858 8.14608 8.82762 9.44178 10.95851 Molecular weight = 354.14amu Principal moments of inertia in cm(-1) A = 0.011259 B = 0.002611 C = 0.002293 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2486.329250 B =10722.769709 C =12206.094223 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.318 6.318 3 C 0.150 3.850 4 C -0.237 4.237 5 C -0.053 4.053 6 C -0.207 4.207 7 C 0.155 3.845 8 N -0.485 5.485 9 C 0.041 3.959 10 C 0.126 3.874 11 N -1.010 6.010 12 S 2.591 3.409 13 O -0.962 6.962 14 O -0.962 6.962 15 C -0.589 4.589 16 C 0.028 3.972 17 C -0.519 4.519 18 H 0.061 0.939 19 C 0.057 3.943 20 N -0.890 5.890 21 Si 0.899 3.101 22 H -0.272 1.272 23 H -0.282 1.282 24 H -0.282 1.282 25 C 0.127 3.873 26 C 0.034 3.966 27 C -0.176 4.176 28 H 0.055 0.945 29 H 0.055 0.945 30 H 0.099 0.901 31 H 0.125 0.875 32 H 0.125 0.875 33 H 0.131 0.869 34 H 0.055 0.945 35 H 0.094 0.906 36 H 0.078 0.922 37 H 0.100 0.900 38 H 0.117 0.883 39 H 0.117 0.883 40 H 0.033 0.967 41 H 0.033 0.967 42 H 0.265 0.735 43 H 0.078 0.922 44 H 0.099 0.901 45 H 0.095 0.905 46 H 0.057 0.943 47 H 0.133 0.867 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.177 -9.454 -15.211 26.979 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.231 6.231 3 C 0.104 3.896 4 C -0.257 4.257 5 C -0.072 4.072 6 C -0.228 4.228 7 C 0.057 3.943 8 N -0.199 5.199 9 C -0.085 4.085 10 C 0.001 3.999 11 N -0.846 5.846 12 S 2.690 3.310 13 O -0.952 6.952 14 O -0.952 6.952 15 C -0.722 4.722 16 C -0.011 4.011 17 C -0.559 4.559 18 H 0.079 0.921 19 C -0.145 4.145 20 N -0.528 5.528 21 Si 0.727 3.273 22 H -0.197 1.197 23 H -0.208 1.208 24 H -0.208 1.208 25 C 0.001 3.999 26 C -0.095 4.095 27 C -0.197 4.197 28 H 0.074 0.926 29 H 0.074 0.926 30 H 0.117 0.883 31 H 0.143 0.857 32 H 0.143 0.857 33 H 0.148 0.852 34 H 0.073 0.927 35 H 0.113 0.887 36 H 0.097 0.903 37 H 0.118 0.882 38 H 0.136 0.864 39 H 0.136 0.864 40 H 0.051 0.949 41 H 0.051 0.949 42 H 0.074 0.926 43 H 0.096 0.904 44 H 0.118 0.882 45 H 0.113 0.887 46 H 0.075 0.925 47 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -18.708 -9.894 -15.784 26.401 hybrid contribution -1.651 1.056 1.727 2.612 sum -20.359 -8.838 -14.057 26.272 Atomic orbital electron populations 1.23047 0.78325 1.03885 1.01394 1.86064 1.21417 1.27025 1.88607 1.18759 0.91846 0.84075 0.94956 1.21132 0.99864 0.92370 1.12339 1.20774 0.94136 0.96952 0.95333 1.21270 0.94229 0.97933 1.09401 1.18639 0.88066 0.92791 0.94834 1.58837 1.04967 1.14315 1.41820 1.22724 0.95631 0.99324 0.90837 1.21472 0.91988 0.82719 1.03765 1.58119 1.56596 1.20350 1.49517 1.05759 0.74570 0.74540 0.76172 1.93539 1.68942 1.48484 1.84259 1.93538 1.73790 1.59923 1.67982 1.30505 1.13292 1.11574 1.16871 1.18965 0.92090 0.96831 0.93193 1.21025 0.93217 1.38334 1.03313 0.92077 1.25071 0.94932 0.95911 0.98596 1.69965 1.05091 1.44239 1.33490 0.86421 0.79703 0.78911 0.82294 1.19672 1.20770 1.20770 1.21458 0.90630 0.95501 0.92298 1.22774 0.96574 0.87635 1.02473 1.19887 0.91357 0.97360 1.11120 0.92609 0.92642 0.88277 0.85739 0.85746 0.85158 0.92670 0.88730 0.90322 0.88206 0.86426 0.86420 0.94853 0.94851 0.92558 0.90382 0.88236 0.88671 0.92493 0.84879 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.16 9.81 101.05 0.99 1.15 16 2 O -0.32 -3.04 10.49 -19.44 -0.20 -3.24 16 3 C 0.15 1.52 6.68 -39.25 -0.26 1.26 16 4 C -0.24 -2.10 9.04 -39.39 -0.36 -2.46 16 5 C -0.05 -0.46 10.03 -39.64 -0.40 -0.86 16 6 C -0.21 -1.99 8.83 -39.36 -0.35 -2.34 16 7 C 0.16 1.63 5.64 -83.81 -0.47 1.15 16 8 N -0.48 -5.01 4.67 -170.84 -0.80 -5.81 16 9 C 0.04 0.42 5.43 -3.70 -0.02 0.40 16 10 C 0.13 1.43 6.47 -3.61 -0.02 1.40 16 11 N -1.01 -13.29 3.26 -113.24 -0.37 -13.66 16 12 S 2.59 45.47 5.42 -107.50 -0.58 44.89 16 13 O -0.96 -19.46 16.79 -57.54 -0.97 -20.42 16 14 O -0.96 -19.39 16.79 -57.54 -0.97 -20.35 16 15 C -0.59 -11.00 6.12 37.16 0.23 -10.78 16 16 C 0.03 0.71 4.98 -27.88 -0.14 0.57 16 17 C -0.52 -14.22 9.11 -34.44 -0.31 -14.54 16 18 H 0.06 1.59 7.74 -52.48 -0.41 1.19 16 19 C 0.06 1.61 5.46 -17.82 -0.10 1.52 16 20 N -0.89 -26.32 13.29 55.43 0.74 -25.58 16 21 Si 0.90 21.08 29.54 -169.99 -5.02 16.06 16 22 H -0.27 -6.19 7.11 56.52 0.40 -5.79 16 23 H -0.28 -6.54 7.11 56.52 0.40 -6.14 16 24 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 25 C 0.13 1.41 6.46 -3.60 -0.02 1.39 16 26 C 0.03 0.33 4.30 -3.71 -0.02 0.31 16 27 C -0.18 -1.86 9.08 -39.24 -0.36 -2.21 16 28 H 0.06 0.27 7.66 -51.93 -0.40 -0.13 16 29 H 0.05 0.25 7.66 -51.93 -0.40 -0.14 16 30 H 0.10 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.12 0.83 6.29 -52.49 -0.33 0.50 16 32 H 0.12 0.81 8.06 -52.49 -0.42 0.39 16 33 H 0.13 1.09 5.80 -52.49 -0.30 0.78 16 34 H 0.05 0.58 8.14 -51.93 -0.42 0.15 16 35 H 0.09 0.81 6.66 -51.93 -0.35 0.47 16 36 H 0.08 0.82 8.14 -51.93 -0.42 0.40 16 37 H 0.10 1.12 7.19 -51.93 -0.37 0.75 16 38 H 0.12 1.97 8.14 -51.93 -0.42 1.55 16 39 H 0.12 1.99 8.14 -51.92 -0.42 1.56 16 40 H 0.03 0.89 8.14 -51.93 -0.42 0.47 16 41 H 0.03 0.89 8.14 -51.93 -0.42 0.46 16 42 H 0.26 7.32 8.31 -40.82 -0.34 6.98 16 43 H 0.08 0.81 8.14 -51.93 -0.42 0.39 16 44 H 0.10 1.09 7.20 -51.93 -0.37 0.72 16 45 H 0.10 0.76 6.88 -51.93 -0.36 0.40 16 46 H 0.06 0.56 7.81 -51.92 -0.41 0.15 16 47 H 0.13 1.32 7.15 -52.49 -0.38 0.95 16 LS Contribution 388.54 15.07 5.86 5.86 Total: -1.00 -35.50 388.54 -10.93 -46.43 By element: Atomic # 1 Polarization: 6.89 SS G_CDS: -7.01 Total: -0.12 kcal Atomic # 6 Polarization: -22.43 SS G_CDS: -1.61 Total: -24.04 kcal Atomic # 7 Polarization: -44.62 SS G_CDS: -0.43 Total: -45.05 kcal Atomic # 8 Polarization: -41.89 SS G_CDS: -2.14 Total: -44.02 kcal Atomic # 14 Polarization: 21.08 SS G_CDS: -5.02 Total: 16.06 kcal Atomic # 16 Polarization: 45.47 SS G_CDS: -0.58 Total: 44.89 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -35.50 -10.93 -46.43 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000104106550.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -19.580 kcal (2) G-P(sol) polarization free energy of solvation -35.497 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -55.077 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.928 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds