Wall clock time and date at job start Tue Mar 31 2020 06:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42907 * 1 3 3 C 1.35953 * 116.99575 * 2 1 4 4 C 1.38041 * 119.99735 * 0.27767 * 3 2 1 5 5 C 1.40095 * 119.82484 * 180.25504 * 4 3 2 6 6 C 1.46689 * 120.08781 * 179.73685 * 5 4 3 7 7 C 1.36215 * 119.99743 * 147.57489 * 6 5 4 8 8 C 1.43191 * 119.99799 * 173.29811 * 7 6 5 9 9 N 8.26998 * 82.51513 * 2.89203 * 2 1 3 10 10 C 1.48092 * 119.99751 * 353.58054 * 7 6 5 11 11 C 1.39535 * 120.12920 * 296.22566 * 10 7 6 12 12 C 1.37952 * 119.88243 * 179.69972 * 11 10 7 13 13 C 1.38353 * 120.15127 * 0.58178 * 12 11 10 14 14 C 1.38448 * 120.26883 * 359.71633 * 13 12 11 15 15 Cl 1.73593 * 119.95081 * 180.02562 * 14 13 12 16 16 C 1.38109 * 120.10805 * 359.97438 * 14 13 12 17 17 C 1.40148 * 119.82072 * 359.46652 * 5 4 3 18 18 C 1.37614 * 119.98885 * 0.27592 * 17 5 4 19 19 C 1.39084 * 120.17458 * 359.97438 * 18 17 5 20 20 O 1.35604 * 119.91357 * 180.02562 * 19 18 17 21 21 C 1.34760 * 116.99832 * 354.38829 * 20 19 18 22 22 H 1.07998 * 119.99990 * 5.07537 * 21 20 19 23 23 C 1.38674 * 119.99917 * 185.07841 * 21 20 19 24 24 N 1.31542 * 120.00356 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 119.99999 * 179.97438 * 23 21 20 26 26 H 1.48499 * 109.47178 * 90.00016 * 25 23 21 27 27 H 1.48499 * 109.47270 * 209.99990 * 25 23 21 28 28 H 1.48502 * 109.47143 * 329.99820 * 25 23 21 29 29 H 1.09003 * 109.46890 * 179.97438 * 1 2 3 30 30 H 1.09001 * 109.47185 * 300.00465 * 1 2 3 31 31 H 1.08997 * 109.46730 * 60.00292 * 1 2 3 32 32 H 1.07995 * 120.08762 * 0.02562 * 4 3 2 33 33 H 1.07995 * 120.00303 * 327.58135 * 6 5 4 34 34 H 1.08000 * 120.05687 * 359.97438 * 11 10 7 35 35 H 1.08001 * 119.92360 * 180.29852 * 12 11 10 36 36 H 1.08005 * 119.86769 * 179.74326 * 13 12 11 37 37 H 1.07998 * 120.08049 * 180.02562 * 16 14 13 38 38 H 1.07999 * 120.00859 * 180.25180 * 17 5 4 39 39 H 1.08005 * 119.91489 * 180.02562 * 18 17 5 40 40 H 0.96998 * 120.00058 * 179.97438 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4291 0.0000 0.0000 3 6 2.0462 1.2114 0.0000 4 6 1.2942 2.3690 0.0058 5 6 1.9339 3.6154 0.0004 6 6 1.1405 4.8492 0.0006 7 6 1.6121 5.9621 0.6287 8 6 0.9094 7.2039 0.5088 9 7 0.3518 8.1891 0.4137 10 6 2.8551 5.8890 1.4305 11 6 2.9067 5.0867 2.5710 12 6 4.0692 5.0176 3.3106 13 6 5.1791 5.7510 2.9308 14 6 5.1329 6.5539 1.8039 15 17 6.5306 7.4701 1.3345 16 6 3.9768 6.6263 1.0518 17 6 3.3339 3.6803 0.0004 18 6 4.0762 2.5215 0.0000 19 6 3.4408 1.2843 0.0001 20 8 4.1774 0.1458 0.0003 21 6 5.5131 0.2813 -0.1171 22 1 5.9575 1.2656 -0.1233 23 6 6.3168 -0.8431 -0.2301 24 7 5.7756 -2.0420 -0.2221 25 14 8.1681 -0.6553 -0.3935 26 1 8.7867 -0.6540 0.9565 27 1 8.7124 -1.7868 -1.1863 28 1 8.4771 0.6244 -1.0808 29 1 -0.3633 -1.0277 -0.0005 30 1 -0.3633 0.5139 0.8899 31 1 -0.3633 0.5138 -0.8900 32 1 0.2157 2.3140 0.0107 33 1 0.1824 4.8752 -0.4970 34 1 2.0396 4.5174 2.8716 35 1 4.1114 4.3931 4.1908 36 1 6.0855 5.6967 3.5156 37 1 3.9413 7.2524 0.1725 38 1 3.8301 4.6395 0.0003 39 1 5.1550 2.5729 0.0005 40 1 6.3378 -2.8285 -0.3015 RHF calculation, no. of doubly occupied orbitals= 61 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000107602816.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:03:25 Heat of formation + Delta-G solvation = 33.083436 kcal Electronic energy + Delta-G solvation = -27831.979027 eV Core-core repulsion = 23797.713894 eV Total energy + Delta-G solvation = -4034.265134 eV No. of doubly occupied orbitals = 61 Molecular weight (most abundant/longest-lived isotopes) = 355.076 amu Computer time = 0.77 seconds Orbital eigenvalues (eV) -40.10142 -39.35539 -37.74279 -37.19786 -36.36494 -36.22619 -33.81141 -32.49034 -30.94527 -30.41064 -29.52851 -28.57390 -26.73218 -25.65747 -23.85714 -22.69025 -22.14139 -21.66294 -20.48467 -18.32127 -18.01937 -17.58309 -16.68917 -16.12619 -15.50823 -15.41996 -15.26532 -15.03736 -14.76566 -14.37609 -14.14780 -13.88331 -13.77853 -13.63733 -13.46305 -13.41046 -13.24140 -12.84111 -12.57262 -12.37675 -11.88076 -11.76462 -11.71257 -11.60144 -11.47798 -11.37739 -11.11334 -11.07525 -10.88228 -10.75314 -10.66991 -10.54126 -9.67714 -9.51951 -9.01214 -8.82232 -8.50257 -8.04394 -6.97020 -6.67613 -4.17836 0.67271 1.18384 1.24619 2.07675 2.09615 2.33433 2.74135 3.02646 3.04050 3.08903 3.39908 3.61658 3.79316 3.87757 4.08851 4.34856 4.61913 4.83453 4.84136 4.95783 5.04776 5.16926 5.20675 5.35692 5.38287 5.46553 5.47439 5.58313 5.65208 5.73130 5.77657 5.91140 6.00358 6.15603 6.22904 6.25920 6.33980 6.41518 6.46479 6.72685 6.75901 6.90713 7.03724 7.17707 7.41391 7.58766 7.73177 8.01593 8.75787 9.43470 10.47768 Molecular weight = 355.08amu Principal moments of inertia in cm(-1) A = 0.008021 B = 0.004069 C = 0.002894 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3489.845733 B = 6880.059871 C = 9672.097585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.030 3.970 2 O -0.304 6.304 3 C 0.051 3.949 4 C -0.135 4.135 5 C -0.174 4.174 6 C 0.049 3.951 7 C -0.100 4.100 8 C 0.268 3.732 9 N -0.445 5.445 10 C -0.002 4.002 11 C -0.085 4.085 12 C -0.099 4.099 13 C -0.110 4.110 14 C -0.031 4.031 15 Cl -0.076 7.076 16 C -0.111 4.111 17 C -0.050 4.050 18 C -0.224 4.224 19 C 0.151 3.849 20 O -0.144 6.144 21 C -0.388 4.388 22 H 0.099 0.901 23 C 0.043 3.957 24 N -0.843 5.843 25 Si 0.943 3.057 26 H -0.270 1.270 27 H -0.275 1.275 28 H -0.264 1.264 29 H 0.091 0.909 30 H 0.047 0.953 31 H 0.047 0.953 32 H 0.123 0.877 33 H 0.127 0.873 34 H 0.132 0.868 35 H 0.134 0.866 36 H 0.131 0.869 37 H 0.132 0.868 38 H 0.122 0.878 39 H 0.136 0.864 40 H 0.275 0.725 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.460 10.279 3.907 11.867 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 O -0.218 6.218 3 C 0.006 3.994 4 C -0.154 4.154 5 C -0.175 4.175 6 C 0.026 3.974 7 C -0.104 4.104 8 C -0.045 4.045 9 N -0.121 5.121 10 C -0.003 4.003 11 C -0.104 4.104 12 C -0.117 4.117 13 C -0.129 4.129 14 C -0.058 4.058 15 Cl -0.048 7.048 16 C -0.130 4.130 17 C -0.069 4.069 18 C -0.244 4.244 19 C 0.094 3.906 20 O -0.045 6.045 21 C -0.463 4.463 22 H 0.116 0.884 23 C -0.165 4.165 24 N -0.474 5.474 25 Si 0.766 3.234 26 H -0.195 1.195 27 H -0.200 1.200 28 H -0.188 1.188 29 H 0.110 0.890 30 H 0.065 0.935 31 H 0.065 0.935 32 H 0.141 0.859 33 H 0.145 0.855 34 H 0.150 0.850 35 H 0.152 0.848 36 H 0.149 0.851 37 H 0.150 0.850 38 H 0.140 0.860 39 H 0.153 0.847 40 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -5.047 11.153 3.726 12.796 hybrid contribution 1.044 -0.099 -0.154 1.060 sum -4.003 11.054 3.572 12.287 Atomic orbital electron populations 1.22909 0.80207 1.03080 1.00331 1.86248 1.19528 1.26254 1.89731 1.18009 0.89321 0.84565 1.07471 1.20783 0.98433 0.90707 1.05499 1.17917 0.92640 0.90760 1.16211 1.22343 0.96133 0.90094 0.88830 1.16326 0.97635 0.87949 1.08504 1.25719 0.93026 0.92833 0.92956 1.81212 1.09870 1.10858 1.10176 1.18170 0.91159 0.96752 0.94235 1.21316 0.98617 0.97133 0.93288 1.21039 0.92176 0.98352 1.00148 1.21091 0.99614 0.96409 0.95797 1.20743 0.88924 0.98512 0.97576 1.98366 1.41328 1.73141 1.91932 1.21129 0.91175 1.00610 1.00056 1.21256 0.92291 0.97928 0.95396 1.20794 1.00682 0.90602 1.12281 1.18918 0.88253 0.87593 0.95851 1.83977 1.19799 1.26045 1.74634 1.21542 0.78309 0.95152 1.51299 0.88392 1.25409 1.00922 0.94132 0.96000 1.70051 1.36743 0.97864 1.42748 0.85674 0.79845 0.78839 0.78996 1.19536 1.20006 1.18785 0.89035 0.93474 0.93464 0.85908 0.85502 0.85023 0.84849 0.85075 0.85037 0.86042 0.84676 0.91510 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.40 9.81 101.05 0.99 1.39 16 2 O -0.30 -5.96 10.28 -34.22 -0.35 -6.31 16 3 C 0.05 0.99 6.70 -39.13 -0.26 0.73 16 4 C -0.13 -2.06 8.78 -38.96 -0.34 -2.40 16 5 C -0.17 -2.51 5.15 -105.07 -0.54 -3.05 16 6 C 0.05 0.56 9.50 -36.90 -0.35 0.21 16 7 C -0.10 -1.19 5.25 -104.66 -0.55 -1.74 16 8 C 0.27 3.51 15.30 -22.48 -0.34 3.17 16 9 N -0.44 -6.67 18.54 41.84 0.78 -5.89 16 10 C 0.00 -0.02 2.88 -104.91 -0.30 -0.32 16 11 C -0.09 -1.00 8.19 -39.20 -0.32 -1.32 16 12 C -0.10 -1.10 10.03 -39.64 -0.40 -1.50 16 13 C -0.11 -1.25 9.82 -39.46 -0.39 -1.64 16 14 C -0.03 -0.37 6.31 -39.55 -0.25 -0.62 16 15 Cl -0.08 -0.89 28.95 -51.86 -1.50 -2.39 16 16 C -0.11 -1.35 8.04 -39.17 -0.31 -1.67 16 17 C -0.05 -0.81 7.59 -39.09 -0.30 -1.10 16 18 C -0.22 -4.32 9.14 -39.50 -0.36 -4.68 16 19 C 0.15 3.34 6.67 -38.74 -0.26 3.09 16 20 O -0.14 -3.85 9.52 -13.93 -0.13 -3.98 16 21 C -0.39 -10.00 9.48 30.89 0.29 -9.70 16 22 H 0.10 2.30 5.18 -52.49 -0.27 2.03 16 23 C 0.04 1.09 5.49 -17.51 -0.10 0.99 16 24 N -0.84 -23.20 13.67 55.48 0.76 -22.44 16 25 Si 0.94 19.06 29.55 -169.99 -5.02 14.04 16 26 H -0.27 -5.32 7.11 56.52 0.40 -4.92 16 27 H -0.28 -5.47 7.11 56.52 0.40 -5.07 16 28 H -0.26 -5.13 7.11 56.52 0.40 -4.73 16 29 H 0.09 1.03 8.14 -51.93 -0.42 0.61 16 30 H 0.05 0.53 7.64 -51.93 -0.40 0.13 16 31 H 0.05 0.54 7.67 -51.93 -0.40 0.14 16 32 H 0.12 1.50 6.28 -52.49 -0.33 1.17 16 33 H 0.13 1.18 8.06 -52.49 -0.42 0.76 16 34 H 0.13 1.43 8.06 -52.49 -0.42 1.01 16 35 H 0.13 1.23 8.06 -52.49 -0.42 0.81 16 36 H 0.13 1.28 8.06 -52.48 -0.42 0.86 16 37 H 0.13 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.12 1.79 4.69 -52.49 -0.25 1.54 16 39 H 0.14 2.64 5.61 -52.48 -0.29 2.35 16 40 H 0.27 6.91 8.31 -40.82 -0.34 6.57 16 LS Contribution 369.79 15.07 5.57 5.57 Total: -1.00 -29.64 369.79 -7.60 -37.24 By element: Atomic # 1 Polarization: 7.95 SS G_CDS: -3.61 Total: 4.34 kcal Atomic # 6 Polarization: -16.08 SS G_CDS: -4.09 Total: -20.17 kcal Atomic # 7 Polarization: -29.87 SS G_CDS: 1.53 Total: -28.33 kcal Atomic # 8 Polarization: -9.81 SS G_CDS: -0.48 Total: -10.29 kcal Atomic # 14 Polarization: 19.06 SS G_CDS: -5.02 Total: 14.04 kcal Atomic # 17 Polarization: -0.89 SS G_CDS: -1.50 Total: -2.39 kcal Total LS contribution 5.57 Total: 5.57 kcal Total: -29.64 -7.60 -37.24 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000107602816.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.327 kcal (2) G-P(sol) polarization free energy of solvation -29.642 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.685 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.244 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.083 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.77 seconds