Wall clock time and date at job start Tue Mar 31 2020 06:19:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 H 1.09001 * 110.64572 * 2 1 4 4 C 1.55158 * 110.71908 * 123.32991 * 2 1 3 5 5 C 1.55136 * 101.48505 * 82.69401 * 4 2 1 6 6 N 1.47417 * 104.72021 * 37.29755 * 5 4 2 7 7 S 1.65600 * 125.64827 * 155.81681 * 6 5 4 8 8 O 1.42101 * 104.27828 * 153.62019 * 7 6 5 9 9 O 1.42105 * 104.27457 * 25.76118 * 7 6 5 10 10 C 1.81399 * 104.45047 * 269.69044 * 7 6 5 11 11 C 1.52996 * 109.47370 * 179.97438 * 10 7 6 12 12 C 1.53002 * 109.47340 * 179.97438 * 11 10 7 13 13 C 1.50706 * 109.46925 * 180.02562 * 12 11 10 14 14 H 1.07999 * 120.00196 * 0.02562 * 13 12 11 15 15 C 1.37879 * 119.99394 * 180.02562 * 13 12 11 16 16 N 1.31514 * 119.99350 * 180.02562 * 15 13 12 17 17 Si 1.86789 * 120.00458 * 359.97438 * 15 13 12 18 18 H 1.48506 * 109.47200 * 90.00092 * 17 15 13 19 19 H 1.48505 * 109.47499 * 210.00153 * 17 15 13 20 20 H 1.48500 * 109.47262 * 330.00415 * 17 15 13 21 21 C 1.47024 * 108.70670 * 335.55342 * 6 5 4 22 22 H 1.08996 * 109.88136 * 120.70351 * 21 6 5 23 23 C 1.50696 * 109.88036 * 241.87180 * 21 6 5 24 24 C 1.38268 * 119.98806 * 218.53962 * 23 21 6 25 25 C 1.38227 * 120.05610 * 180.02562 * 24 23 21 26 26 C 1.38221 * 120.01938 * 0.02562 * 25 24 23 27 27 C 1.38433 * 119.98035 * 359.97438 * 26 25 24 28 28 F 1.35097 * 120.03101 * 180.02562 * 27 26 25 29 29 C 1.38176 * 119.98864 * 38.27083 * 23 21 6 30 30 H 1.08997 * 109.47766 * 183.14412 * 1 2 3 31 31 H 1.09001 * 109.47395 * 303.15059 * 1 2 3 32 32 H 1.08999 * 109.46762 * 63.14714 * 1 2 3 33 33 H 1.08996 * 111.00535 * 200.93378 * 4 2 1 34 34 H 1.08997 * 111.00568 * 324.75036 * 4 2 1 35 35 H 1.08996 * 110.49789 * 278.45577 * 5 4 2 36 36 H 1.08999 * 110.34137 * 156.06029 * 5 4 2 37 37 H 1.09004 * 109.46978 * 59.99836 * 10 7 6 38 38 H 1.09000 * 109.47234 * 299.99799 * 10 7 6 39 39 H 1.09004 * 109.46785 * 60.00231 * 11 10 7 40 40 H 1.09004 * 109.47694 * 300.00330 * 11 10 7 41 41 H 1.09000 * 109.46497 * 60.00561 * 12 11 10 42 42 H 1.09000 * 109.47312 * 300.00340 * 12 11 10 43 43 H 0.97005 * 119.99656 * 179.97438 * 16 15 13 44 44 H 1.07998 * 119.97100 * 0.02931 * 24 23 21 45 45 H 1.08000 * 119.98571 * 180.02562 * 25 24 23 46 46 H 1.08000 * 120.00411 * 179.97438 * 26 25 24 47 47 H 1.07996 * 120.01489 * 0.02562 * 29 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.9143 1.0200 0.0000 4 6 2.0789 -0.7974 1.2125 5 6 2.0073 -2.2537 0.6825 6 7 2.3715 -2.1520 -0.7423 7 16 3.0022 -3.3726 -1.6668 8 8 2.6083 -3.0475 -2.9928 9 8 2.5444 -4.5615 -1.0371 10 6 4.7982 -3.2027 -1.4766 11 6 5.5025 -4.2881 -2.2930 12 6 7.0174 -4.1444 -2.1331 13 6 7.7111 -5.2132 -2.9379 14 1 7.1297 -5.9236 -3.5069 15 6 9.0880 -5.2840 -2.9478 16 7 9.6934 -6.2164 -3.6505 17 14 10.0936 -4.0549 -1.9643 18 1 10.3240 -4.5855 -0.5965 19 1 11.3995 -3.8335 -2.6358 20 1 9.3568 -2.7684 -1.8785 21 6 2.0760 -0.7893 -1.2085 22 1 2.9869 -0.3183 -1.5780 23 6 1.0395 -0.8350 -2.3014 24 6 1.1379 0.0202 -3.3835 25 6 0.1877 -0.0202 -4.3865 26 6 -0.8625 -0.9154 -4.3085 27 6 -0.9622 -1.7721 -3.2257 28 9 -1.9880 -2.6479 -3.1486 29 6 -0.0059 -1.7353 -2.2246 30 1 -0.3634 -1.0260 0.0564 31 1 -0.3634 0.5620 0.8604 32 1 -0.3633 0.4642 -0.9169 33 1 3.1060 -0.5097 1.4367 34 1 1.4399 -0.6691 2.0862 35 1 0.9972 -2.6492 0.7886 36 1 2.7206 -2.8851 1.2122 37 1 5.0639 -3.3098 -0.4248 38 1 5.1099 -2.2205 -1.8319 39 1 5.2368 -4.1814 -3.3448 40 1 5.1908 -5.2702 -1.9374 41 1 7.2833 -4.2509 -1.0814 42 1 7.3288 -3.1624 -2.4891 43 1 10.6621 -6.2660 -3.6577 44 1 1.9580 0.7202 -3.4450 45 1 0.2659 0.6480 -5.2314 46 1 -1.6051 -0.9465 -5.0921 47 1 -0.0805 -2.4059 -1.3814 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000110656077.mol2 47 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:19:52 Heat of formation + Delta-G solvation = -95.103451 kcal Electronic energy + Delta-G solvation = -30469.986218 eV Core-core repulsion = 26273.103155 eV Total energy + Delta-G solvation = -4196.883063 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 355.140 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -48.96130 -40.50643 -38.07420 -36.95343 -35.79486 -34.83596 -32.70010 -32.24005 -32.10817 -30.72786 -28.59490 -28.37299 -26.81823 -23.77849 -23.29650 -22.77644 -21.92887 -20.47284 -20.25118 -18.95808 -17.81727 -17.48327 -16.89153 -16.47168 -16.38481 -16.02603 -15.89083 -15.67911 -15.46095 -14.77671 -14.51092 -14.35233 -14.21778 -13.96130 -13.80167 -13.23215 -13.17480 -12.93745 -12.86616 -12.52921 -12.37284 -12.17871 -12.16028 -12.02398 -11.90371 -11.88070 -11.72302 -11.59809 -11.44978 -11.17111 -11.07104 -11.00314 -10.96873 -10.84919 -10.12153 -9.91113 -9.78881 -9.32552 -9.23212 -8.94276 -8.75307 -8.60560 -6.10063 -4.09463 0.29436 1.02563 1.09720 2.64572 3.24739 3.32246 3.34164 3.41971 3.88025 3.93833 4.09428 4.19673 4.32790 4.38506 4.43314 4.57064 4.67221 4.83315 4.84796 4.96274 5.00661 5.01944 5.06910 5.15217 5.23493 5.24279 5.32854 5.38120 5.41803 5.58704 5.66361 5.69275 5.71467 5.72605 5.78482 5.89446 5.97374 6.01575 6.05677 6.14073 6.20350 6.23320 6.37063 6.64012 6.76419 7.09702 7.23882 7.69012 8.45962 8.94347 9.50858 11.03278 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.014257 B = 0.002899 C = 0.002717 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1963.448228 B = 9655.663288 C =10303.508951 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.090 4.090 3 H 0.092 0.908 4 C -0.127 4.127 5 C 0.119 3.881 6 N -1.011 6.011 7 S 2.606 3.394 8 O -0.941 6.941 9 O -0.954 6.954 10 C -0.616 4.616 11 C -0.097 4.097 12 C -0.003 4.003 13 C -0.528 4.528 14 H 0.075 0.925 15 C 0.067 3.933 16 N -0.900 5.900 17 Si 0.880 3.120 18 H -0.276 1.276 19 H -0.286 1.286 20 H -0.266 1.266 21 C 0.194 3.806 22 H 0.090 0.910 23 C -0.053 4.053 24 C -0.115 4.115 25 C -0.088 4.088 26 C -0.155 4.155 27 C 0.097 3.903 28 F -0.142 7.142 29 C -0.132 4.132 30 H 0.061 0.939 31 H 0.057 0.943 32 H 0.062 0.938 33 H 0.080 0.920 34 H 0.084 0.916 35 H 0.070 0.930 36 H 0.079 0.921 37 H 0.126 0.874 38 H 0.127 0.873 39 H 0.072 0.928 40 H 0.070 0.930 41 H 0.015 0.985 42 H 0.020 0.980 43 H 0.264 0.736 44 H 0.129 0.871 45 H 0.132 0.868 46 H 0.132 0.868 47 H 0.130 0.870 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.135 18.647 8.402 29.410 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.109 4.109 3 H 0.110 0.890 4 C -0.166 4.166 5 C -0.006 4.006 6 N -0.847 5.847 7 S 2.704 3.296 8 O -0.931 6.931 9 O -0.945 6.945 10 C -0.747 4.747 11 C -0.137 4.137 12 C -0.042 4.042 13 C -0.566 4.566 14 H 0.093 0.907 15 C -0.134 4.134 16 N -0.538 5.538 17 Si 0.708 3.292 18 H -0.202 1.202 19 H -0.212 1.212 20 H -0.191 1.191 21 C 0.087 3.913 22 H 0.107 0.893 23 C -0.055 4.055 24 C -0.134 4.134 25 C -0.106 4.106 26 C -0.174 4.174 27 C 0.078 3.922 28 F -0.121 7.121 29 C -0.151 4.151 30 H 0.080 0.920 31 H 0.076 0.924 32 H 0.081 0.919 33 H 0.099 0.901 34 H 0.103 0.897 35 H 0.088 0.912 36 H 0.097 0.903 37 H 0.144 0.856 38 H 0.145 0.855 39 H 0.090 0.910 40 H 0.089 0.911 41 H 0.034 0.966 42 H 0.038 0.962 43 H 0.074 0.926 44 H 0.147 0.853 45 H 0.150 0.850 46 H 0.150 0.850 47 H 0.148 0.852 Dipole moment (debyes) X Y Z Total from point charges -21.488 17.830 7.820 28.997 hybrid contribution 1.115 0.581 0.679 1.429 sum -20.373 18.411 8.499 28.745 Atomic orbital electron populations 1.22000 0.94041 1.02467 1.02048 1.22182 0.96684 0.99093 0.92972 0.88962 1.22932 1.02189 0.94051 0.97435 1.22050 1.01087 0.97636 0.79799 1.59002 1.78571 1.25167 1.21967 1.05307 0.77834 0.72757 0.73705 1.93615 1.80901 1.83150 1.35483 1.93581 1.79531 1.44585 1.76763 1.30652 1.23752 1.09846 1.10441 1.21316 0.99486 0.94645 0.98237 1.19524 0.89769 0.97858 0.97046 1.21134 0.91876 1.14239 1.29310 0.90730 1.25027 0.97867 0.95386 0.95136 1.69914 1.09410 1.33460 1.41051 0.86773 0.79663 0.82363 0.80438 1.20203 1.21222 1.19070 1.20279 0.95819 0.82593 0.92602 0.89258 1.19795 0.95019 0.95203 0.95477 1.20961 0.99427 0.99567 0.93430 1.20922 0.93401 0.97814 0.98495 1.21102 1.00847 0.97486 0.97951 1.17648 0.86928 0.90995 0.96610 1.91491 1.56956 1.67271 1.96389 1.20884 0.94575 1.00658 0.98993 0.92024 0.92403 0.91896 0.90135 0.89708 0.91206 0.90285 0.85554 0.85480 0.90970 0.91092 0.96634 0.96181 0.92602 0.85316 0.85028 0.85010 0.85240 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.97 7.74 37.15 0.29 -0.69 16 2 C -0.09 -0.56 3.55 -88.79 -0.31 -0.88 16 3 H 0.09 0.44 8.14 -51.93 -0.42 0.01 16 4 C -0.13 -0.73 6.59 -24.46 -0.16 -0.89 16 5 C 0.12 1.00 6.57 -2.41 -0.02 0.99 16 6 N -1.01 -10.83 2.54 -105.51 -0.27 -11.10 16 7 S 2.61 38.48 5.56 -107.50 -0.60 37.88 16 8 O -0.94 -16.17 15.74 -57.54 -0.91 -17.07 16 9 O -0.95 -16.88 17.60 -57.54 -1.01 -17.89 16 10 C -0.62 -9.02 6.18 37.16 0.23 -8.79 16 11 C -0.10 -1.92 5.16 -26.73 -0.14 -2.06 16 12 C 0.00 -0.08 4.04 -27.88 -0.11 -0.19 16 13 C -0.53 -15.08 9.66 -34.44 -0.33 -15.41 16 14 H 0.07 2.29 7.99 -52.49 -0.42 1.87 16 15 C 0.07 1.96 5.47 -17.82 -0.10 1.87 16 16 N -0.90 -27.72 13.96 55.43 0.77 -26.95 16 17 Si 0.88 21.34 27.47 -169.99 -4.67 16.67 16 18 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 19 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 20 H -0.27 -6.10 6.54 56.52 0.37 -5.73 16 21 C 0.19 1.73 3.21 -68.10 -0.22 1.51 16 22 H 0.09 0.68 8.03 -51.93 -0.42 0.26 16 23 C -0.05 -0.57 2.09 -104.64 -0.22 -0.78 16 24 C -0.12 -1.10 9.68 -39.57 -0.38 -1.49 16 25 C -0.09 -0.82 10.04 -39.59 -0.40 -1.22 16 26 C -0.15 -1.63 10.03 -39.52 -0.40 -2.03 16 27 C 0.10 1.21 7.30 -39.42 -0.29 0.93 16 28 F -0.14 -1.89 17.27 2.25 0.04 -1.85 16 29 C -0.13 -1.60 6.56 -39.51 -0.26 -1.86 16 30 H 0.06 0.46 5.71 -51.93 -0.30 0.17 16 31 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 32 H 0.06 0.46 6.82 -51.93 -0.35 0.10 16 33 H 0.08 0.42 8.14 -51.93 -0.42 -0.01 16 34 H 0.08 0.37 8.04 -51.93 -0.42 -0.04 16 35 H 0.07 0.58 7.67 -51.93 -0.40 0.18 16 36 H 0.08 0.62 8.14 -51.93 -0.42 0.20 16 37 H 0.13 1.60 8.14 -51.92 -0.42 1.17 16 38 H 0.13 1.60 8.14 -51.92 -0.42 1.17 16 39 H 0.07 1.42 8.14 -51.93 -0.42 1.00 16 40 H 0.07 1.40 8.14 -51.93 -0.42 0.98 16 41 H 0.02 0.35 7.57 -51.93 -0.39 -0.04 16 42 H 0.02 0.46 7.20 -51.93 -0.37 0.08 16 43 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 44 H 0.13 0.92 8.05 -52.49 -0.42 0.50 16 45 H 0.13 0.87 8.06 -52.49 -0.42 0.44 16 46 H 0.13 1.12 8.06 -52.49 -0.42 0.70 16 47 H 0.13 1.56 6.91 -52.49 -0.36 1.20 16 LS Contribution 388.30 15.07 5.85 5.85 Total: -1.00 -35.88 388.30 -10.85 -46.74 By element: Atomic # 1 Polarization: 5.95 SS G_CDS: -7.25 Total: -1.30 kcal Atomic # 6 Polarization: -28.17 SS G_CDS: -2.82 Total: -30.98 kcal Atomic # 7 Polarization: -38.55 SS G_CDS: 0.51 Total: -38.04 kcal Atomic # 8 Polarization: -33.04 SS G_CDS: -1.92 Total: -34.96 kcal Atomic # 9 Polarization: -1.89 SS G_CDS: 0.04 Total: -1.85 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -4.67 Total: 16.67 kcal Atomic # 16 Polarization: 38.48 SS G_CDS: -0.60 Total: 37.88 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -35.88 -10.85 -46.74 kcal The number of atoms in the molecule is 47 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000110656077.mol2 47 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.366 kcal (2) G-P(sol) polarization free energy of solvation -35.883 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -84.249 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.737 kcal (6) G-S(sol) free energy of system = (1) + (5) -95.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.87 seconds