Wall clock time and date at job start Tue Mar 31 2020 06:13:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53004 * 109.46838 * 2 1 4 4 C 1.52998 * 109.47491 * 240.00084 * 2 1 3 5 5 C 1.53005 * 109.47178 * 119.99205 * 2 1 3 6 6 S 1.81399 * 109.46686 * 60.00791 * 5 2 1 7 7 O 1.42104 * 110.54574 * 68.37089 * 6 5 2 8 8 O 1.42108 * 110.54323 * 291.62179 * 6 5 2 9 9 N 1.65594 * 104.45020 * 180.02562 * 6 5 2 10 10 C 1.34775 * 120.00254 * 64.99540 * 9 6 5 11 11 O 1.21287 * 119.99798 * 0.02562 * 10 9 6 12 12 C 1.50705 * 120.00246 * 180.02562 * 10 9 6 13 13 C 1.50695 * 109.46992 * 180.02562 * 12 10 9 14 14 C 1.38299 * 119.93247 * 90.00201 * 13 12 10 15 15 C 1.38101 * 120.07425 * 179.97438 * 14 13 12 16 16 C 1.38886 * 119.92536 * 0.02562 * 15 14 13 17 17 O 1.35750 * 120.06440 * 180.02562 * 16 15 14 18 18 C 1.34828 * 117.00075 * 5.53777 * 17 16 15 19 19 H 1.07993 * 120.00518 * 354.94289 * 18 17 16 20 20 C 1.38663 * 119.99751 * 174.94575 * 18 17 16 21 21 N 1.31556 * 120.00220 * 359.97438 * 20 18 17 22 22 Si 1.86795 * 119.99821 * 180.02562 * 20 18 17 23 23 H 1.48502 * 109.47448 * 89.99502 * 22 20 18 24 24 H 1.48501 * 109.47175 * 209.99712 * 22 20 18 25 25 H 1.48506 * 109.47415 * 329.99678 * 22 20 18 26 26 C 1.38874 * 119.86623 * 0.27854 * 16 15 14 27 27 C 1.38106 * 119.92542 * 359.44577 * 26 16 15 28 28 H 1.08991 * 109.47421 * 299.99920 * 1 2 3 29 29 H 1.08999 * 109.46892 * 60.01064 * 1 2 3 30 30 H 1.09001 * 109.46530 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.47044 * 179.97438 * 3 2 1 32 32 H 1.09005 * 109.46988 * 299.99922 * 3 2 1 33 33 H 1.08996 * 109.47645 * 59.99465 * 3 2 1 34 34 H 1.09003 * 109.46674 * 299.99650 * 4 2 1 35 35 H 1.08996 * 109.47287 * 59.99696 * 4 2 1 36 36 H 1.08999 * 109.47221 * 179.97438 * 4 2 1 37 37 H 1.08991 * 109.47144 * 300.00838 * 5 2 1 38 38 H 1.09000 * 109.46512 * 180.02562 * 5 2 1 39 39 H 0.97005 * 120.00142 * 245.00277 * 9 6 5 40 40 H 1.08998 * 109.46621 * 60.00483 * 12 10 9 41 41 H 1.08996 * 109.47266 * 300.00146 * 12 10 9 42 42 H 1.07999 * 119.96503 * 0.02562 * 14 13 12 43 43 H 1.07992 * 120.03608 * 180.02562 * 15 14 13 44 44 H 0.96996 * 120.00178 * 179.97438 * 21 20 18 45 45 H 1.07996 * 120.03745 * 179.72497 * 26 16 15 46 46 H 1.07997 * 119.96326 * 180.27708 * 27 26 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 6 2.0401 -0.7212 -1.2492 5 6 2.0400 -0.7211 1.2494 6 16 1.4355 -2.4314 1.2494 7 8 2.0482 -3.1769 0.2062 8 8 0.0281 -2.4628 1.4432 9 7 2.0530 -3.0879 2.6385 10 6 1.6576 -2.6198 3.8389 11 8 0.8491 -1.7180 3.9017 12 6 2.2201 -3.2170 5.1032 13 6 1.6195 -2.5215 6.2976 14 6 0.4532 -3.0041 6.8628 15 6 -0.0994 -2.3694 7.9577 16 6 0.5172 -1.2449 8.4909 17 8 -0.0233 -0.6191 9.5675 18 6 -1.0936 -1.2040 10.1421 19 1 -1.5329 -2.0837 9.6955 20 6 -1.6305 -0.6761 11.3065 21 7 -1.0951 0.3953 11.8509 22 14 -3.1129 -1.4869 12.1029 23 1 -2.6541 -2.5124 13.0740 24 1 -3.9180 -0.4595 12.8111 25 1 -3.9452 -2.1334 11.0566 26 6 1.6848 -0.7590 7.9173 27 6 2.2355 -1.4016 6.8259 28 1 -0.3634 0.5138 0.8899 29 1 -0.3633 0.5137 -0.8901 30 1 -0.3632 -1.0277 -0.0005 31 1 3.1299 1.4426 0.0005 32 1 1.6766 1.9564 -0.8900 33 1 1.6766 1.9565 0.8899 34 1 1.6768 -1.7489 -1.2491 35 1 1.6768 -0.2074 -2.1392 36 1 3.1301 -0.7208 -1.2494 37 1 1.6766 -0.2073 2.1392 38 1 3.1300 -0.7206 1.2495 39 1 2.6995 -3.8094 2.5883 40 1 3.3025 -3.0899 5.1146 41 1 1.9784 -4.2791 5.1421 42 1 -0.0256 -3.8788 6.4479 43 1 -1.0100 -2.7470 8.3988 44 1 -1.4709 0.7648 12.6652 45 1 2.1642 0.1178 8.3270 46 1 3.1460 -1.0269 6.3821 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000112762072.mol2 46 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:13:28 Heat of formation + Delta-G solvation = -121.730383 kcal Electronic energy + Delta-G solvation = -29398.613263 eV Core-core repulsion = 25188.202780 eV Total energy + Delta-G solvation = -4210.410483 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 355.133 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.31560 -38.90393 -38.07627 -37.43815 -36.59383 -36.27861 -34.62152 -32.51427 -31.43410 -30.19595 -28.45514 -27.73062 -27.63401 -26.89886 -25.20971 -22.34262 -22.01544 -20.50900 -20.23880 -19.44929 -18.33706 -18.01435 -17.64069 -16.97570 -16.68157 -15.87953 -15.56054 -15.29380 -14.81832 -14.71517 -14.52223 -14.41569 -14.23219 -14.06749 -13.58261 -13.56136 -13.49570 -13.01226 -12.74420 -12.69240 -12.62876 -12.58878 -12.30955 -12.17887 -11.99786 -11.84281 -11.67403 -11.60043 -11.39881 -11.32393 -11.20566 -11.06522 -10.93575 -10.82914 -10.65942 -10.57512 -10.44055 -10.21692 -9.35601 -8.84420 -8.19711 -7.22012 -6.46769 -4.05159 -0.22015 1.94564 2.11421 2.21276 2.34607 3.12657 3.13621 3.18532 3.31531 3.81626 3.94341 3.95970 4.20581 4.33961 4.40802 4.59586 4.75364 4.80366 4.87308 5.06155 5.09861 5.12901 5.16058 5.26207 5.27950 5.29285 5.40025 5.51130 5.53588 5.54548 5.67095 5.68598 5.78242 5.78364 5.90139 6.00301 6.17957 6.35644 6.38227 6.66430 6.87415 7.02311 7.18538 7.32057 7.41973 7.42618 7.79162 7.98441 8.98943 9.68281 10.71109 Molecular weight = 355.13amu Principal moments of inertia in cm(-1) A = 0.017681 B = 0.002160 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1583.202131 B =12959.076641 C =13316.705913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.051 4.051 3 C -0.134 4.134 4 C -0.177 4.177 5 C -0.610 4.610 6 S 2.588 3.412 7 O -0.950 6.950 8 O -0.925 6.925 9 N -1.061 6.061 10 C 0.526 3.474 11 O -0.474 6.474 12 C -0.079 4.079 13 C -0.183 4.183 14 C -0.053 4.053 15 C -0.232 4.232 16 C 0.159 3.841 17 O -0.176 6.176 18 C -0.392 4.392 19 H 0.093 0.907 20 C 0.039 3.961 21 N -0.862 5.862 22 Si 0.942 3.058 23 H -0.273 1.273 24 H -0.277 1.277 25 H -0.267 1.267 26 C -0.192 4.192 27 C -0.059 4.059 28 H 0.073 0.927 29 H 0.071 0.929 30 H 0.071 0.929 31 H 0.059 0.941 32 H 0.063 0.937 33 H 0.062 0.938 34 H 0.070 0.930 35 H 0.072 0.928 36 H 0.068 0.932 37 H 0.147 0.853 38 H 0.134 0.866 39 H 0.432 0.568 40 H 0.104 0.896 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.128 0.872 44 H 0.270 0.730 45 H 0.117 0.883 46 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.351 -4.818 -22.540 25.267 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.235 4.235 2 C -0.053 4.053 3 C -0.192 4.192 4 C -0.234 4.234 5 C -0.741 4.741 6 S 2.684 3.316 7 O -0.941 6.941 8 O -0.915 6.915 9 N -0.827 5.827 10 C 0.313 3.687 11 O -0.343 6.343 12 C -0.121 4.121 13 C -0.185 4.185 14 C -0.071 4.071 15 C -0.251 4.251 16 C 0.104 3.896 17 O -0.079 6.079 18 C -0.468 4.468 19 H 0.110 0.890 20 C -0.165 4.165 21 N -0.496 5.496 22 Si 0.766 3.234 23 H -0.199 1.199 24 H -0.202 1.202 25 H -0.191 1.191 26 C -0.212 4.212 27 C -0.077 4.077 28 H 0.092 0.908 29 H 0.090 0.910 30 H 0.089 0.911 31 H 0.078 0.922 32 H 0.082 0.918 33 H 0.081 0.919 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.087 0.913 37 H 0.165 0.835 38 H 0.152 0.848 39 H 0.267 0.733 40 H 0.122 0.878 41 H 0.121 0.879 42 H 0.124 0.876 43 H 0.145 0.855 44 H 0.080 0.920 45 H 0.135 0.865 46 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 9.188 -4.240 -22.732 24.882 hybrid contribution 0.002 -0.336 0.680 0.759 sum 9.190 -4.577 -22.052 24.324 Atomic orbital electron populations 1.22388 0.93015 1.04248 1.03849 1.20270 0.96507 0.97158 0.91349 1.21833 1.01128 0.93617 1.02645 1.22396 1.02487 1.01230 0.97285 1.30582 1.12417 1.22876 1.08188 1.05936 0.75448 0.77503 0.72720 1.93624 1.78326 1.69033 1.53074 1.93664 1.28056 1.86020 1.83759 1.55243 1.56482 1.47904 1.23038 1.21285 0.80140 0.82220 0.85025 1.90904 1.29472 1.27526 1.86398 1.20530 1.01359 1.00963 0.89221 1.18597 0.99742 1.00705 0.99426 1.20546 0.93897 0.98070 0.94617 1.21121 1.03537 0.99850 1.00632 1.19411 0.91495 0.90490 0.88155 1.83973 1.42217 1.45144 1.36533 1.21348 1.05505 1.12423 1.07497 0.88981 1.25303 0.99210 0.96290 0.95718 1.70036 1.39878 1.20142 1.19591 0.85702 0.79751 0.78610 0.79320 1.19853 1.20241 1.19141 1.20148 0.97107 1.03603 1.00296 1.20390 0.98255 0.94107 0.94964 0.90774 0.91041 0.91053 0.92232 0.91796 0.91859 0.91112 0.90897 0.91296 0.83492 0.84810 0.73262 0.87828 0.87854 0.87590 0.85457 0.91983 0.86473 0.87281 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -1.72 8.00 37.16 0.30 -1.43 16 2 C -0.05 -0.43 0.79 -154.50 -0.12 -0.56 16 3 C -0.13 -0.95 8.47 37.16 0.31 -0.63 16 4 C -0.18 -1.37 8.00 37.16 0.30 -1.07 16 5 C -0.61 -5.25 4.89 37.16 0.18 -5.07 16 6 S 2.59 27.78 4.14 -107.50 -0.45 27.33 16 7 O -0.95 -10.86 15.70 -57.54 -0.90 -11.76 16 8 O -0.92 -13.81 14.66 -64.80 -0.95 -14.76 16 9 N -1.06 -9.34 5.60 31.22 0.17 -9.17 16 10 C 0.53 6.33 7.56 -10.98 -0.08 6.24 16 11 O -0.47 -7.74 14.14 -11.61 -0.16 -7.91 16 12 C -0.08 -0.84 5.83 -29.04 -0.17 -1.01 16 13 C -0.18 -2.94 4.38 -104.58 -0.46 -3.39 16 14 C -0.05 -0.96 9.69 -39.61 -0.38 -1.34 16 15 C -0.23 -5.06 9.17 -39.39 -0.36 -5.42 16 16 C 0.16 3.83 6.65 -39.11 -0.26 3.57 16 17 O -0.18 -5.01 9.76 0.05 0.00 -5.01 16 18 C -0.39 -10.94 9.49 30.89 0.29 -10.65 16 19 H 0.09 2.39 5.20 -52.49 -0.27 2.11 16 20 C 0.04 1.08 5.49 -17.51 -0.10 0.98 16 21 N -0.86 -25.22 13.67 55.48 0.76 -24.46 16 22 Si 0.94 20.54 29.55 -169.99 -5.02 15.52 16 23 H -0.27 -5.78 7.11 56.52 0.40 -5.38 16 24 H -0.28 -5.93 7.11 56.52 0.40 -5.53 16 25 H -0.27 -5.63 7.11 56.52 0.40 -5.23 16 26 C -0.19 -4.00 9.99 -39.39 -0.39 -4.39 16 27 C -0.06 -1.00 9.69 -39.61 -0.38 -1.38 16 28 H 0.07 0.76 8.14 -51.93 -0.42 0.34 16 29 H 0.07 0.55 8.14 -51.93 -0.42 0.13 16 30 H 0.07 0.79 5.47 -51.93 -0.28 0.51 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 33 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 34 H 0.07 0.64 5.46 -51.93 -0.28 0.36 16 35 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 37 H 0.15 1.40 7.19 -51.93 -0.37 1.02 16 38 H 0.13 0.75 8.14 -51.92 -0.42 0.33 16 39 H 0.43 2.08 8.79 -34.47 -0.30 1.78 16 40 H 0.10 0.75 8.08 -51.93 -0.42 0.33 16 41 H 0.10 0.86 8.08 -51.93 -0.42 0.44 16 42 H 0.11 1.65 8.06 -52.49 -0.42 1.22 16 43 H 0.13 2.79 5.64 -52.49 -0.30 2.49 16 44 H 0.27 7.24 8.31 -40.82 -0.34 6.90 16 45 H 0.12 2.34 8.06 -52.49 -0.42 1.92 16 46 H 0.11 1.46 8.06 -52.49 -0.42 1.04 16 LS Contribution 388.17 15.07 5.85 5.85 Total: -1.00 -36.65 388.17 -8.47 -45.12 By element: Atomic # 1 Polarization: 11.23 SS G_CDS: -6.44 Total: 4.79 kcal Atomic # 6 Polarization: -24.23 SS G_CDS: -1.33 Total: -25.55 kcal Atomic # 7 Polarization: -34.56 SS G_CDS: 0.93 Total: -33.63 kcal Atomic # 8 Polarization: -37.42 SS G_CDS: -2.02 Total: -39.43 kcal Atomic # 14 Polarization: 20.54 SS G_CDS: -5.02 Total: 15.52 kcal Atomic # 16 Polarization: 27.78 SS G_CDS: -0.45 Total: 27.33 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -36.65 -8.47 -45.12 kcal The number of atoms in the molecule is 46 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000112762072.mol2 46 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.611 kcal (2) G-P(sol) polarization free energy of solvation -36.652 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.468 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.119 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.730 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds