Wall clock time and date at job start Tue Mar 31 2020 05:56:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42900 * 1 3 3 C 1.42901 * 114.00000 * 2 1 4 4 C 1.53001 * 109.47066 * 179.97438 * 3 2 1 5 5 N 1.46503 * 109.46934 * 64.99881 * 4 3 2 6 6 C 1.46500 * 120.00030 * 264.79416 * 5 4 3 7 7 C 1.50707 * 109.46978 * 275.75728 * 6 5 4 8 8 H 1.07998 * 119.99592 * 0.02562 * 7 6 5 9 9 C 1.37878 * 119.99782 * 180.02562 * 7 6 5 10 10 N 1.31512 * 119.99841 * 0.02562 * 9 7 6 11 11 Si 1.86795 * 119.99629 * 180.02562 * 9 7 6 12 12 H 1.48494 * 109.47404 * 359.97438 * 11 9 7 13 13 H 1.48499 * 109.47221 * 120.00102 * 11 9 7 14 14 H 1.48505 * 109.46932 * 239.99804 * 11 9 7 15 15 C 1.34770 * 119.99844 * 84.79532 * 5 4 3 16 16 O 1.21557 * 120.00195 * 4.96867 * 15 5 4 17 17 C 1.47845 * 120.00218 * 184.97897 * 15 5 4 18 18 C 1.39597 * 120.14581 * 131.75818 * 17 15 5 19 19 C 1.37944 * 119.87353 * 180.02562 * 18 17 15 20 20 C 1.50698 * 119.91833 * 179.97438 * 19 18 17 21 21 C 1.38355 * 120.15927 * 0.02562 * 19 18 17 22 22 C 1.38427 * 120.28428 * 359.97438 * 21 19 18 23 23 Br 1.89098 * 119.94252 * 180.02562 * 22 21 19 24 24 C 1.38078 * 120.12213 * 359.97438 * 22 21 19 25 25 H 1.08999 * 109.47092 * 59.99957 * 1 2 3 26 26 H 1.09002 * 109.47793 * 180.02562 * 1 2 3 27 27 H 1.09006 * 109.47415 * 300.00007 * 1 2 3 28 28 H 1.09003 * 109.46799 * 59.99840 * 3 2 1 29 29 H 1.08997 * 109.47004 * 299.99854 * 3 2 1 30 30 H 1.08997 * 109.46752 * 305.00338 * 4 3 2 31 31 H 1.08995 * 109.47116 * 185.00351 * 4 3 2 32 32 H 1.08994 * 109.47422 * 35.75649 * 6 5 4 33 33 H 1.08999 * 109.47187 * 155.75952 * 6 5 4 34 34 H 0.97007 * 119.99324 * 180.02562 * 10 9 7 35 35 H 1.08001 * 120.06061 * 359.97438 * 18 17 15 36 36 H 1.09009 * 109.47035 * 90.00285 * 20 19 18 37 37 H 1.08999 * 109.47420 * 209.99694 * 20 19 18 38 38 H 1.09004 * 109.47556 * 330.00267 * 20 19 18 39 39 H 1.08000 * 119.86449 * 179.97438 * 21 19 18 40 40 H 1.08001 * 120.07754 * 180.27491 * 24 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3055 0.0000 4 6 3.5355 1.1846 0.0006 5 7 3.9766 0.5639 -1.2509 6 6 4.2160 -0.8803 -1.3077 7 6 5.6100 -1.1780 -0.8181 8 1 6.2529 -0.3721 -0.4965 9 6 6.0643 -2.4793 -0.7809 10 7 5.2814 -3.4605 -1.1731 11 14 7.7917 -2.8483 -0.1735 12 1 8.4645 -1.5801 0.2061 13 1 7.7199 -3.7442 1.0086 14 1 8.5643 -3.5141 -1.2530 15 6 4.1623 1.3215 -2.3500 16 8 4.0516 2.5300 -2.2809 17 6 4.5002 0.6827 -3.6397 18 6 3.8059 1.0333 -4.7989 19 6 4.1256 0.4333 -5.9992 20 6 3.3763 0.8106 -7.2511 21 6 5.1316 -0.5148 -6.0563 22 6 5.8243 -0.8674 -4.9109 23 35 7.1981 -2.1638 -5.0001 24 6 5.5148 -0.2734 -3.7034 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3635 -1.0276 0.0005 27 1 -0.3634 0.5139 0.8900 28 1 1.6885 1.8464 0.8900 29 1 1.6886 1.8463 -0.8900 30 1 3.8507 0.5685 0.8427 31 1 3.9784 2.1765 0.0903 32 1 3.4916 -1.3938 -0.6757 33 1 4.1106 -1.2259 -2.3360 34 1 5.6009 -4.3760 -1.1465 35 1 3.0195 1.7722 -4.7559 36 1 3.8825 1.6428 -7.7406 37 1 3.3449 -0.0438 -7.9272 38 1 2.3597 1.1058 -6.9912 39 1 5.3777 -0.9818 -6.9985 40 1 6.0587 -0.5458 -2.8110 RHF calculation, no. of doubly occupied orbitals= 55 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000124254298.mol2 40 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:56:16 Heat of formation + Delta-G solvation = -70.541650 kcal Electronic energy + Delta-G solvation = -24148.962897 eV Core-core repulsion = 20588.467637 eV Total energy + Delta-G solvation = -3560.495260 eV No. of doubly occupied orbitals = 55 Molecular weight (most abundant/longest-lived isotopes) = 355.057 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.42817 -39.67886 -38.63816 -36.78098 -34.61739 -34.09756 -33.23826 -31.15943 -30.31901 -28.97051 -27.79716 -27.19979 -25.37791 -24.70277 -23.16710 -22.43119 -20.14510 -18.58265 -18.13413 -17.76679 -17.32073 -17.07036 -16.61730 -16.56031 -16.29767 -15.77388 -15.31753 -15.12263 -14.66636 -14.51231 -14.27847 -14.15331 -13.58491 -13.40277 -13.20706 -13.14360 -13.07085 -12.79887 -12.78109 -12.63016 -12.54557 -12.13924 -12.07380 -11.92267 -11.68961 -11.59725 -11.22896 -10.88951 -10.60919 -10.52021 -9.81273 -9.53314 -9.48321 -8.15772 -6.28445 -0.08975 0.22477 0.68673 1.38506 1.43367 1.50890 1.69603 2.20135 2.42665 2.66148 2.92747 3.14470 3.55798 3.83257 4.08807 4.12579 4.17405 4.24611 4.34810 4.38270 4.40269 4.51915 4.54496 4.60208 4.79229 4.83436 4.85154 4.88814 4.90209 4.99662 5.20048 5.21680 5.33390 5.40031 5.44876 5.67462 5.82095 5.82502 6.09259 6.27123 6.53267 6.81855 7.18967 7.41391 8.89495 Molecular weight = 355.06amu Principal moments of inertia in cm(-1) A = 0.008745 B = 0.005941 C = 0.004001 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3200.930684 B = 4711.792309 C = 6996.872025 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.028 3.972 2 O -0.411 6.411 3 C 0.056 3.944 4 C 0.115 3.885 5 N -0.582 5.582 6 C 0.258 3.742 7 C -0.547 4.547 8 H 0.051 0.949 9 C 0.046 3.954 10 N -0.899 5.899 11 Si 0.929 3.071 12 H -0.270 1.270 13 H -0.278 1.278 14 H -0.275 1.275 15 C 0.554 3.446 16 O -0.587 6.587 17 C -0.137 4.137 18 C -0.067 4.067 19 C -0.090 4.090 20 C -0.105 4.105 21 C -0.073 4.073 22 C -0.104 4.104 23 Br -0.054 7.054 24 C -0.068 4.068 25 H 0.042 0.958 26 H 0.089 0.911 27 H 0.058 0.942 28 H 0.085 0.915 29 H 0.041 0.959 30 H 0.085 0.915 31 H 0.094 0.906 32 H 0.021 0.979 33 H 0.028 0.972 34 H 0.267 0.733 35 H 0.140 0.860 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.078 0.922 39 H 0.159 0.841 40 H 0.149 0.851 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.531 4.958 -9.070 11.286 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 O -0.330 6.330 3 C -0.021 4.021 4 C -0.008 4.008 5 N -0.310 5.310 6 C 0.137 3.863 7 C -0.585 4.585 8 H 0.069 0.931 9 C -0.157 4.157 10 N -0.537 5.537 11 Si 0.755 3.245 12 H -0.194 1.194 13 H -0.204 1.204 14 H -0.200 1.200 15 C 0.344 3.656 16 O -0.471 6.471 17 C -0.140 4.140 18 C -0.086 4.086 19 C -0.091 4.091 20 C -0.161 4.161 21 C -0.093 4.093 22 C -0.184 4.184 23 Br 0.032 6.968 24 C -0.088 4.088 25 H 0.061 0.939 26 H 0.107 0.893 27 H 0.077 0.923 28 H 0.103 0.897 29 H 0.059 0.941 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.039 0.961 33 H 0.046 0.954 34 H 0.076 0.924 35 H 0.158 0.842 36 H 0.106 0.894 37 H 0.104 0.896 38 H 0.097 0.903 39 H 0.177 0.823 40 H 0.167 0.833 Dipole moment (debyes) X Y Z Total from point charges -3.986 4.685 -9.040 10.934 hybrid contribution 0.549 -0.154 0.856 1.028 sum -3.437 4.530 -8.184 9.965 Atomic orbital electron populations 1.22879 0.79902 1.03370 1.00692 1.88003 1.21255 1.28294 1.95495 1.22924 0.93341 0.84781 1.01060 1.21555 0.93065 0.99518 0.86675 1.48103 1.63099 1.10358 1.09428 1.19195 0.95372 0.74344 0.97390 1.21502 0.99420 0.92665 1.44947 0.93053 1.25351 0.99952 0.95784 0.94650 1.70007 1.37204 1.00103 1.46346 0.85930 0.81547 0.78517 0.78516 1.19430 1.20358 1.20004 1.18523 0.76494 0.86020 0.84605 1.90645 1.55528 1.14459 1.86472 1.19913 0.99962 0.99787 0.94379 1.21296 0.98505 0.98158 0.90672 1.20139 0.96741 0.96003 0.96203 1.20834 0.99586 1.03201 0.92474 1.21423 0.94071 0.96546 0.97248 1.21781 0.99841 1.00142 0.96602 1.96639 1.47624 1.53705 1.98836 1.22130 0.96063 0.92002 0.98580 0.93913 0.89283 0.92303 0.89697 0.94061 0.89615 0.88821 0.96096 0.95416 0.92406 0.84234 0.89398 0.89556 0.90344 0.82315 0.83328 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.70 11.01 113.37 1.25 1.95 16 2 O -0.41 -14.56 10.00 -148.98 -1.49 -16.05 16 3 C 0.06 1.80 6.25 71.98 0.45 2.25 16 4 C 0.11 4.30 5.80 86.38 0.50 4.80 16 5 N -0.58 -25.64 2.42 -829.57 -2.00 -27.65 16 6 C 0.26 12.81 4.57 85.64 0.39 13.20 16 7 C -0.55 -28.52 6.85 25.60 0.18 -28.35 16 8 H 0.05 2.74 7.81 -2.91 -0.02 2.72 16 9 C 0.05 2.39 5.46 84.66 0.46 2.85 16 10 N -0.90 -49.21 13.29 21.45 0.28 -48.92 16 11 Si 0.93 42.08 29.54 68.60 2.03 44.11 16 12 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 13 H -0.28 -12.35 7.11 99.48 0.71 -11.64 16 14 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 15 C 0.55 24.39 7.21 86.79 0.63 25.01 16 16 O -0.59 -26.87 16.66 -3.90 -0.06 -26.93 16 17 C -0.14 -5.56 4.95 -20.09 -0.10 -5.66 16 18 C -0.07 -2.21 9.37 22.53 0.21 -2.00 16 19 C -0.09 -2.43 5.87 -19.91 -0.12 -2.54 16 20 C -0.10 -1.79 10.01 71.24 0.71 -1.08 16 21 C -0.07 -2.12 9.43 22.34 0.21 -1.91 16 22 C -0.10 -3.81 6.22 22.28 0.14 -3.67 16 23 Br -0.05 -1.89 33.69 -20.37 -0.69 -2.58 16 24 C -0.07 -2.87 7.25 22.55 0.16 -2.71 16 25 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 26 H 0.09 2.10 8.14 -2.39 -0.02 2.08 16 27 H 0.06 1.20 8.14 -2.38 -0.02 1.18 16 28 H 0.09 2.13 8.14 -2.39 -0.02 2.11 16 29 H 0.04 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.09 3.28 8.03 -2.39 -0.02 3.26 16 31 H 0.09 3.33 7.52 -2.39 -0.02 3.31 16 32 H 0.02 1.14 7.52 -2.39 -0.02 1.12 16 33 H 0.03 1.47 5.40 -2.39 -0.01 1.46 16 34 H 0.27 13.93 8.31 -92.70 -0.77 13.16 16 35 H 0.14 4.15 8.06 -2.91 -0.02 4.12 16 36 H 0.09 1.26 8.14 -2.38 -0.02 1.24 16 37 H 0.09 1.19 8.08 -2.39 -0.02 1.17 16 38 H 0.08 1.21 8.08 -2.39 -0.02 1.19 16 39 H 0.16 3.56 8.06 -2.91 -0.02 3.54 16 40 H 0.15 7.20 4.76 -2.91 -0.01 7.19 16 Total: -1.00 -63.44 357.64 4.18 -59.26 By element: Atomic # 1 Polarization: 15.57 SS G_CDS: 1.04 Total: 16.62 kcal Atomic # 6 Polarization: -2.93 SS G_CDS: 5.07 Total: 2.14 kcal Atomic # 7 Polarization: -74.85 SS G_CDS: -1.72 Total: -76.57 kcal Atomic # 8 Polarization: -41.43 SS G_CDS: -1.55 Total: -42.98 kcal Atomic # 14 Polarization: 42.08 SS G_CDS: 2.03 Total: 44.11 kcal Atomic # 35 Polarization: -1.89 SS G_CDS: -0.69 Total: -2.58 kcal Total: -63.44 4.18 -59.26 kcal The number of atoms in the molecule is 40 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000124254298.mol2 40 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -11.283 kcal (2) G-P(sol) polarization free energy of solvation -63.442 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -74.725 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.542 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds