Wall clock time and date at job start Tue Mar 31 2020 05:02:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08999 * 109.47528 * 2 1 4 4 C 1.50701 * 109.47311 * 239.99441 * 2 1 3 5 5 H 1.07995 * 120.00025 * 239.99921 * 4 2 1 6 6 C 1.37877 * 119.99200 * 60.00323 * 4 2 1 7 7 N 1.31515 * 120.00498 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 119.99647 * 179.97438 * 6 4 2 9 9 H 1.48508 * 109.47011 * 0.02562 * 8 6 4 10 10 H 1.48500 * 109.47207 * 119.99566 * 8 6 4 11 11 H 1.48501 * 109.47257 * 239.99988 * 8 6 4 12 12 N 1.46504 * 109.47068 * 119.99563 * 2 1 3 13 13 C 1.46504 * 119.99525 * 60.00166 * 12 2 1 14 14 C 1.34774 * 120.00522 * 240.00121 * 12 2 1 15 15 O 1.21366 * 119.99670 * 354.38836 * 14 12 2 16 16 C 1.49347 * 120.00458 * 174.39392 * 14 12 2 17 17 O 1.21377 * 119.99695 * 0.68893 * 16 14 12 18 18 N 1.34778 * 120.00226 * 180.68157 * 16 14 12 19 19 C 1.39726 * 119.99950 * 185.63531 * 18 16 14 20 20 C 1.38962 * 120.06926 * 209.16256 * 19 18 16 21 21 C 1.38076 * 119.94327 * 180.02562 * 20 19 18 22 22 C 1.38306 * 120.08697 * 0.02562 * 21 20 19 23 23 C 1.38365 * 120.14004 * 359.97438 * 22 21 20 24 24 Br 1.89097 * 119.97023 * 180.02562 * 23 22 21 25 25 C 1.38206 * 120.05455 * 0.02562 * 23 22 21 26 26 H 1.09002 * 109.46898 * 60.00160 * 1 2 3 27 27 H 1.08992 * 109.47084 * 180.02562 * 1 2 3 28 28 H 1.09002 * 109.47042 * 300.00546 * 1 2 3 29 29 H 0.96999 * 119.99647 * 180.02562 * 7 6 4 30 30 H 1.09001 * 109.46659 * 263.75658 * 13 12 2 31 31 H 1.08993 * 109.47355 * 23.75906 * 13 12 2 32 32 H 1.09002 * 109.46771 * 143.76446 * 13 12 2 33 33 H 0.96999 * 120.00010 * 5.63618 * 18 16 14 34 34 H 1.08001 * 120.02554 * 0.02562 * 20 19 18 35 35 H 1.08004 * 119.95942 * 179.97438 * 21 20 19 36 36 H 1.07991 * 119.92697 * 180.02562 * 22 21 20 37 37 H 1.08006 * 120.04053 * 179.75012 * 25 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1312 6 6 1.6993 -0.2394 -2.4826 7 7 0.9428 0.8296 -2.6033 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6036 10 1 1.1679 -1.5868 -4.8164 11 1 3.1473 -0.1859 -4.8160 12 7 2.0183 -0.6905 1.1963 13 6 1.6643 -2.0931 1.4281 14 6 2.7931 -0.0356 2.0834 15 8 3.1705 1.0925 1.8428 16 6 3.1874 -0.6980 3.3626 17 8 2.8205 -1.8308 3.5976 18 7 3.9509 -0.0379 4.2559 19 6 4.4178 -0.6956 5.3969 20 6 4.6530 0.0191 6.5652 21 6 5.1149 -0.6334 7.6910 22 6 5.3442 -1.9969 7.6571 23 6 5.1111 -2.7119 6.4957 24 35 5.4255 -4.5761 6.4550 25 6 4.6488 -2.0647 5.3654 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 -0.3633 0.5139 0.8900 29 1 0.7082 1.1607 -3.4844 30 1 0.8010 -2.1450 2.0915 31 1 1.4215 -2.5684 0.4778 32 1 2.5072 -2.6093 1.8877 33 1 4.1762 0.8937 4.1067 34 1 4.4747 1.0839 6.5925 35 1 5.2982 -0.0781 8.5991 36 1 5.7050 -2.5046 8.5393 37 1 4.4708 -2.6224 4.4578 RHF calculation, no. of doubly occupied orbitals= 54 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000132269752.mol2 37 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 05:02:32 Heat of formation + Delta-G solvation = -22.888553 kcal Electronic energy + Delta-G solvation = -22832.995094 eV Core-core repulsion = 19236.451795 eV Total energy + Delta-G solvation = -3596.543299 eV No. of doubly occupied orbitals = 54 Molecular weight (most abundant/longest-lived isotopes) = 354.037 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.02082 -39.35220 -37.94975 -35.97410 -34.83939 -32.83617 -32.38577 -30.30644 -29.55668 -29.29462 -26.35546 -25.35709 -24.89506 -23.08383 -22.23588 -20.75593 -19.34038 -17.87138 -17.25664 -16.73310 -16.44625 -15.95805 -15.74831 -15.30345 -14.90876 -14.47297 -14.25853 -13.95333 -13.69000 -13.37086 -13.14841 -12.59210 -12.43522 -12.32218 -11.78594 -11.73282 -11.66395 -11.24860 -11.13637 -10.90051 -10.83175 -10.76378 -10.48972 -10.42732 -10.32316 -10.24165 -9.27509 -9.07831 -8.87935 -8.51614 -8.40791 -7.81460 -6.15964 -4.24307 0.74870 0.96491 1.40343 1.80035 2.54811 3.22743 3.30645 3.31714 3.34893 3.63943 3.90463 4.33455 4.52863 4.69522 4.78016 4.83721 5.08469 5.14508 5.16196 5.45231 5.85108 5.94049 5.98165 6.02127 6.06899 6.17230 6.49219 6.58949 6.66017 6.70213 6.90212 6.99322 7.19027 7.32802 7.60936 7.74080 7.90903 8.04025 8.27593 8.51725 8.80694 9.42155 10.89597 Molecular weight = 354.04amu Principal moments of inertia in cm(-1) A = 0.017556 B = 0.002628 C = 0.002399 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1594.533315 B =10650.213800 C =11667.970770 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.254 3.746 3 H 0.067 0.933 4 C -0.528 4.528 5 H 0.063 0.937 6 C 0.066 3.934 7 N -0.887 5.887 8 Si 0.901 3.099 9 H -0.272 1.272 10 H -0.282 1.282 11 H -0.282 1.282 12 N -0.550 5.550 13 C 0.078 3.922 14 C 0.493 3.507 15 O -0.534 6.534 16 C 0.507 3.493 17 O -0.494 6.494 18 N -0.651 5.651 19 C 0.161 3.839 20 C -0.133 4.133 21 C -0.092 4.092 22 C -0.113 4.113 23 C -0.069 4.069 24 Br -0.048 7.048 25 C -0.101 4.101 26 H 0.097 0.903 27 H 0.033 0.967 28 H 0.012 0.988 29 H 0.264 0.736 30 H 0.049 0.951 31 H 0.079 0.921 32 H 0.078 0.922 33 H 0.425 0.575 34 H 0.135 0.865 35 H 0.136 0.864 36 H 0.133 0.867 37 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.118 -6.216 21.415 23.731 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.155 3.845 3 H 0.084 0.916 4 C -0.567 4.567 5 H 0.081 0.919 6 C -0.137 4.137 7 N -0.525 5.525 8 Si 0.729 3.271 9 H -0.197 1.197 10 H -0.208 1.208 11 H -0.208 1.208 12 N -0.280 5.280 13 C -0.065 4.065 14 C 0.273 3.727 15 O -0.413 6.413 16 C 0.291 3.709 17 O -0.368 6.368 18 N -0.298 5.298 19 C 0.065 3.935 20 C -0.154 4.154 21 C -0.112 4.112 22 C -0.134 4.134 23 C -0.149 4.149 24 Br 0.037 6.963 25 C -0.122 4.122 26 H 0.116 0.884 27 H 0.053 0.947 28 H 0.032 0.968 29 H 0.074 0.926 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.097 0.903 33 H 0.264 0.736 34 H 0.153 0.847 35 H 0.154 0.846 36 H 0.150 0.850 37 H 0.169 0.831 Dipole moment (debyes) X Y Z Total from point charges 8.015 -7.026 21.148 23.683 hybrid contribution 0.253 0.377 -0.903 1.010 sum 8.269 -6.649 20.246 22.858 Atomic orbital electron populations 1.22106 0.97470 0.99911 1.01074 1.19196 0.91287 0.94569 0.79426 0.91563 1.21309 1.32187 1.13228 0.89968 0.91883 1.24886 0.94796 0.94941 0.99033 1.69879 1.36144 1.22552 1.23882 0.86391 0.78658 0.79610 0.82478 1.19691 1.20836 1.20823 1.48286 1.45277 1.12518 1.21930 1.22020 1.01001 0.81609 1.01888 1.19544 0.82018 0.86696 0.84400 1.90732 1.54569 1.18658 1.77336 1.21053 0.77922 0.86378 0.85526 1.90707 1.51944 1.17899 1.76216 1.43314 1.49934 1.16439 1.20075 1.17699 0.97089 0.91910 0.86813 1.21063 1.02365 1.00775 0.91206 1.20927 0.98459 0.93737 0.98054 1.21084 1.01100 0.94333 0.96889 1.21605 1.05484 0.91017 0.96773 1.96727 1.95052 1.05340 1.99136 1.21245 0.98381 0.93602 0.99019 0.88420 0.94739 0.96843 0.92582 0.93239 0.90243 0.90337 0.73632 0.84727 0.84618 0.84958 0.83108 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.43 8.97 37.16 0.33 -3.10 16 2 C 0.25 6.33 2.62 -69.08 -0.18 6.14 16 3 H 0.07 1.87 6.91 -51.93 -0.36 1.51 16 4 C -0.53 -13.98 7.95 -34.44 -0.27 -14.25 16 5 H 0.06 1.66 7.44 -52.49 -0.39 1.27 16 6 C 0.07 1.76 5.30 -17.82 -0.09 1.67 16 7 N -0.89 -24.38 11.32 55.43 0.63 -23.75 16 8 Si 0.90 20.67 29.54 -169.99 -5.02 15.65 16 9 H -0.27 -6.19 7.11 56.52 0.40 -5.78 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 12 N -0.55 -11.78 2.75 -175.81 -0.48 -12.27 16 13 C 0.08 1.44 8.20 59.85 0.49 1.93 16 14 C 0.49 9.95 7.72 -11.63 -0.09 9.86 16 15 O -0.53 -11.90 15.83 5.48 0.09 -11.81 16 16 C 0.51 8.43 7.53 -11.63 -0.09 8.34 16 17 O -0.49 -8.50 10.69 5.47 0.06 -8.44 16 18 N -0.65 -8.69 5.33 -10.30 -0.05 -8.75 16 19 C 0.16 1.96 6.35 -83.75 -0.53 1.43 16 20 C -0.13 -1.24 9.95 -39.37 -0.39 -1.63 16 21 C -0.09 -0.74 10.04 -39.62 -0.40 -1.14 16 22 C -0.11 -1.03 9.78 -39.51 -0.39 -1.42 16 23 C -0.07 -0.78 6.22 -39.55 -0.25 -1.02 16 24 Br -0.05 -0.51 33.70 -68.01 -2.29 -2.81 16 25 C -0.10 -1.31 8.41 -39.35 -0.33 -1.64 16 26 H 0.10 2.49 6.07 -51.93 -0.32 2.17 16 27 H 0.03 0.75 7.67 -51.93 -0.40 0.35 16 28 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 29 H 0.26 6.89 8.31 -40.82 -0.34 6.55 16 30 H 0.05 0.85 8.13 -51.93 -0.42 0.43 16 31 H 0.08 1.50 7.12 -51.93 -0.37 1.13 16 32 H 0.08 1.38 5.84 -51.93 -0.30 1.07 16 33 H 0.43 4.99 8.28 -40.82 -0.34 4.65 16 34 H 0.13 0.94 8.06 -52.49 -0.42 0.52 16 35 H 0.14 0.69 8.06 -52.48 -0.42 0.26 16 36 H 0.13 0.93 8.06 -52.49 -0.42 0.51 16 37 H 0.15 2.22 6.13 -52.48 -0.32 1.89 16 LS Contribution 333.76 15.07 5.03 5.03 Total: -1.00 -29.40 333.76 -8.28 -37.68 By element: Atomic # 1 Polarization: 8.35 SS G_CDS: -4.04 Total: 4.30 kcal Atomic # 6 Polarization: 7.36 SS G_CDS: -2.19 Total: 5.17 kcal Atomic # 7 Polarization: -44.86 SS G_CDS: 0.09 Total: -44.77 kcal Atomic # 8 Polarization: -20.40 SS G_CDS: 0.15 Total: -20.26 kcal Atomic # 14 Polarization: 20.67 SS G_CDS: -5.02 Total: 15.65 kcal Atomic # 35 Polarization: -0.51 SS G_CDS: -2.29 Total: -2.81 kcal Total LS contribution 5.03 Total: 5.03 kcal Total: -29.40 -8.28 -37.68 kcal The number of atoms in the molecule is 37 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000132269752.mol2 37 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 14.790 kcal (2) G-P(sol) polarization free energy of solvation -29.398 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.280 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.679 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.889 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds