Wall clock time and date at job start Tue Mar 31 2020 06:17:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42901 * 1 3 3 C 1.35953 * 117.00100 * 2 1 4 4 C 1.38193 * 120.00418 * 0.23814 * 3 2 1 5 5 C 1.39752 * 119.85390 * 180.18019 * 4 3 2 6 6 C 1.47374 * 120.06490 * 179.81027 * 5 4 3 7 7 N 1.29801 * 120.00167 * 21.79725 * 6 5 4 8 8 N 1.40108 * 119.99957 * 15.68856 * 7 6 5 9 9 C 1.34773 * 120.00351 * 187.68115 * 8 7 6 10 10 O 1.21603 * 120.00143 * 179.97438 * 9 8 7 11 11 N 1.34778 * 119.99710 * 0.02562 * 9 8 7 12 12 C 1.39922 * 120.00257 * 185.20464 * 11 9 8 13 13 C 1.38879 * 120.06449 * 28.97267 * 12 11 9 14 14 C 1.38115 * 119.92522 * 179.97438 * 13 12 11 15 15 C 1.38285 * 120.07252 * 359.97438 * 14 13 12 16 16 C 1.38284 * 120.13768 * 0.04493 * 15 14 13 17 17 C 1.38109 * 120.07554 * 359.95970 * 16 15 14 18 18 C 1.39820 * 119.87161 * 359.54027 * 5 4 3 19 19 C 1.37776 * 120.01088 * 0.26705 * 18 5 4 20 20 C 1.38953 * 120.14601 * 359.96145 * 19 18 5 21 21 O 1.35704 * 119.93437 * 180.02562 * 20 19 18 22 22 C 1.34791 * 117.00014 * 5.55343 * 21 20 19 23 23 H 1.08003 * 120.00092 * 5.07359 * 22 21 20 24 24 C 1.38620 * 120.00087 * 185.07791 * 22 21 20 25 25 N 1.31580 * 119.99765 * 180.02562 * 24 22 21 26 26 Si 1.86804 * 119.99956 * 359.97438 * 24 22 21 27 27 H 1.48496 * 109.47046 * 90.00028 * 26 24 22 28 28 H 1.48498 * 109.46843 * 209.99983 * 26 24 22 29 29 H 1.48499 * 109.46923 * 330.00403 * 26 24 22 30 30 H 1.09001 * 109.46921 * 299.99847 * 1 2 3 31 31 H 1.09003 * 109.47011 * 60.00148 * 1 2 3 32 32 H 1.08997 * 109.46708 * 179.97438 * 1 2 3 33 33 H 1.07997 * 120.07394 * 359.97438 * 4 3 2 34 34 H 1.08002 * 119.99673 * 201.79879 * 6 5 4 35 35 H 0.97006 * 119.99672 * 7.67697 * 8 7 6 36 36 H 0.97005 * 120.00016 * 5.19419 * 11 9 8 37 37 H 1.07998 * 120.03595 * 359.70515 * 13 12 11 38 38 H 1.07997 * 119.96269 * 180.02562 * 14 13 12 39 39 H 1.07993 * 119.93104 * 180.02562 * 15 14 13 40 40 H 1.08007 * 119.96524 * 179.97438 * 16 15 14 41 41 H 1.07996 * 120.04222 * 180.02562 * 17 16 15 42 42 H 1.07994 * 119.99510 * 180.25036 * 18 5 4 43 43 H 1.08000 * 119.92497 * 179.97438 * 19 18 5 44 44 H 0.97007 * 119.99571 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0463 1.2113 0.0000 4 6 1.2937 2.3704 0.0050 5 6 1.9314 3.6139 0.0011 6 6 1.1334 4.8529 0.0022 7 7 -0.0941 4.8340 0.4238 8 7 -0.5605 3.7462 1.1737 9 6 -1.8696 3.6503 1.4794 10 8 -2.2745 2.7060 2.1298 11 7 -2.7301 4.6005 1.0633 12 6 -4.0680 4.5599 1.4711 13 6 -4.4064 3.9896 2.6914 14 6 -5.7278 3.9515 3.0913 15 6 -6.7133 4.4809 2.2785 16 6 -6.3796 5.0490 1.0627 17 6 -5.0601 5.0902 0.6569 18 6 3.3281 3.6803 0.0020 19 6 4.0730 2.5213 0.0011 20 6 3.4396 1.2846 0.0001 21 8 4.1776 0.1458 -0.0003 22 6 5.5134 0.2822 0.1166 23 1 5.9437 1.2580 0.2872 24 6 6.3350 -0.8299 0.0177 25 7 7.6390 -0.6967 0.1323 26 14 5.5908 -2.5178 -0.2767 27 1 5.4938 -2.7680 -1.7372 28 1 6.4522 -3.5542 0.3470 29 1 4.2347 -2.5727 0.3259 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3632 -1.0277 -0.0005 33 1 0.2151 2.3154 0.0084 34 1 1.5700 5.7767 -0.3479 35 1 0.0588 3.0621 1.4727 36 1 -2.4220 5.3127 0.4812 37 1 -3.6376 3.5724 3.3248 38 1 -5.9915 3.5085 4.0403 39 1 -7.7458 4.4502 2.5936 40 1 -7.1516 5.4613 0.4298 41 1 -4.8000 5.5344 -0.2925 42 1 3.8229 4.6402 0.0032 43 1 5.1517 2.5742 0.0014 44 1 8.2139 -1.4750 0.0635 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000136959858.mol2 44 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 06:17:18 Heat of formation + Delta-G solvation = 29.820670 kcal Electronic energy + Delta-G solvation = -30173.467736 eV Core-core repulsion = 25866.477799 eV Total energy + Delta-G solvation = -4306.989937 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 355.136 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.88228 -40.08143 -38.84024 -37.98014 -37.55936 -35.63155 -34.85064 -32.69429 -32.12056 -31.06122 -29.92227 -29.40128 -29.15962 -26.93870 -25.66199 -23.56921 -23.00871 -22.68845 -21.98338 -21.22562 -20.39733 -18.76564 -18.41664 -18.04889 -17.19388 -16.85763 -16.64275 -16.14239 -15.76332 -15.46841 -15.39671 -15.04741 -14.67327 -14.49005 -14.19525 -14.11194 -13.94214 -13.88435 -13.54019 -13.37710 -13.08816 -12.67212 -12.45514 -12.34071 -12.23670 -11.93465 -11.69159 -11.44903 -11.36345 -11.22656 -10.98486 -10.77469 -10.65713 -10.36912 -10.34627 -10.28739 -9.72496 -9.19163 -9.09506 -8.83954 -8.28896 -8.15995 -7.25683 -6.66154 -4.26879 0.97663 1.18577 1.25231 1.78377 2.29776 2.51360 3.04742 3.13251 3.16941 3.34669 3.36113 3.68309 3.71426 4.09133 4.16776 4.44385 4.70233 4.74115 4.78267 4.86470 4.99906 5.10992 5.22856 5.28205 5.29500 5.35234 5.38872 5.43838 5.52074 5.66346 5.72150 5.83415 5.93612 6.01344 6.15094 6.18046 6.19324 6.34388 6.40275 6.50933 6.64824 6.69523 6.86840 6.89799 7.15918 7.20295 7.39492 7.69102 7.86049 7.89730 8.39597 8.66967 9.26858 10.39097 Molecular weight = 355.14amu Principal moments of inertia in cm(-1) A = 0.020426 B = 0.002145 C = 0.002000 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.460176 B =13050.790890 C =13998.009585 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 O -0.305 6.305 3 C 0.063 3.937 4 C -0.170 4.170 5 C -0.194 4.194 6 C 0.170 3.830 7 N -0.300 5.300 8 N -0.586 5.586 9 C 0.726 3.274 10 O -0.572 6.572 11 N -0.671 5.671 12 C 0.170 3.830 13 C -0.130 4.130 14 C -0.099 4.099 15 C -0.145 4.145 16 C -0.099 4.099 17 C -0.153 4.153 18 C -0.051 4.051 19 C -0.207 4.207 20 C 0.155 3.845 21 O -0.186 6.186 22 C -0.388 4.388 23 H 0.112 0.888 24 C 0.068 3.932 25 N -0.862 5.862 26 Si 0.904 3.096 27 H -0.271 1.271 28 H -0.279 1.279 29 H -0.253 1.253 30 H 0.051 0.949 31 H 0.046 0.954 32 H 0.096 0.904 33 H 0.133 0.867 34 H 0.181 0.819 35 H 0.413 0.587 36 H 0.418 0.582 37 H 0.141 0.859 38 H 0.123 0.877 39 H 0.120 0.880 40 H 0.124 0.876 41 H 0.124 0.876 42 H 0.123 0.877 43 H 0.146 0.854 44 H 0.284 0.716 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.057 12.584 0.084 23.678 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 O -0.219 6.219 3 C 0.017 3.983 4 C -0.191 4.191 5 C -0.198 4.198 6 C -0.038 4.038 7 N -0.109 5.109 8 N -0.338 5.338 9 C 0.427 3.573 10 O -0.447 6.447 11 N -0.318 5.318 12 C 0.074 3.926 13 C -0.150 4.150 14 C -0.118 4.118 15 C -0.164 4.164 16 C -0.118 4.118 17 C -0.174 4.174 18 C -0.071 4.071 19 C -0.227 4.227 20 C 0.099 3.901 21 O -0.088 6.088 22 C -0.462 4.462 23 H 0.129 0.871 24 C -0.138 4.138 25 N -0.497 5.497 26 Si 0.729 3.271 27 H -0.196 1.196 28 H -0.205 1.205 29 H -0.176 1.176 30 H 0.070 0.930 31 H 0.065 0.935 32 H 0.114 0.886 33 H 0.150 0.850 34 H 0.198 0.802 35 H 0.261 0.739 36 H 0.256 0.744 37 H 0.159 0.841 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.142 0.858 41 H 0.142 0.858 42 H 0.141 0.859 43 H 0.164 0.836 44 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -21.048 11.831 0.622 24.153 hybrid contribution 0.949 -0.972 -0.474 1.439 sum -20.099 10.859 0.148 22.845 Atomic orbital electron populations 1.22966 0.79506 1.03526 1.00672 1.86196 1.20022 1.26155 1.89543 1.18052 0.89325 0.84654 1.06235 1.21200 0.99221 0.91350 1.07354 1.18700 0.93925 0.91568 1.15627 1.25131 0.88759 0.97228 0.92689 1.74635 1.15440 1.09968 1.10868 1.46963 1.07491 1.26703 1.52637 1.15545 0.79973 0.82220 0.79551 1.90994 1.75545 1.33565 1.44598 1.42592 1.07165 1.29469 1.52555 1.17639 0.82556 0.99055 0.93344 1.21365 0.97543 1.00947 0.95146 1.21062 0.92378 0.98649 0.99682 1.21103 0.99356 1.00637 0.95337 1.20893 0.95325 0.99090 0.96500 1.20825 0.92315 1.04833 0.99462 1.20884 0.91918 0.97875 0.96456 1.21026 1.01426 0.90475 1.09766 1.18613 0.87670 0.87185 0.96592 1.83642 1.20531 1.27358 1.77250 1.20896 0.77019 0.98438 1.49895 0.87092 1.24527 0.94410 0.99788 0.95120 1.69649 1.02547 1.32447 1.45051 0.86172 0.80407 0.81168 0.79395 1.19605 1.20476 1.17634 0.93041 0.93548 0.88553 0.84995 0.80212 0.73862 0.74429 0.84111 0.85854 0.86181 0.85824 0.85794 0.85886 0.83639 0.90547 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.43 9.81 101.05 0.99 1.42 16 2 O -0.31 -6.06 10.28 -34.21 -0.35 -6.41 16 3 C 0.06 1.24 6.70 -39.12 -0.26 0.98 16 4 C -0.17 -2.78 6.71 -39.03 -0.26 -3.04 16 5 C -0.19 -2.78 5.58 -105.02 -0.59 -3.37 16 6 C 0.17 1.87 11.21 -14.69 -0.16 1.70 16 7 N -0.30 -3.57 10.41 32.14 0.33 -3.24 16 8 N -0.59 -8.04 4.51 27.64 0.12 -7.92 16 9 C 0.73 10.48 8.45 -86.92 -0.73 9.75 16 10 O -0.57 -9.74 14.57 5.27 0.08 -9.66 16 11 N -0.67 -7.99 5.31 -14.22 -0.08 -8.06 16 12 C 0.17 2.00 6.36 -83.69 -0.53 1.47 16 13 C -0.13 -1.60 8.69 -39.39 -0.34 -1.94 16 14 C -0.10 -1.00 10.04 -39.61 -0.40 -1.40 16 15 C -0.15 -1.27 10.04 -39.55 -0.40 -1.66 16 16 C -0.10 -0.84 10.04 -39.61 -0.40 -1.24 16 17 C -0.15 -1.46 9.95 -39.39 -0.39 -1.86 16 18 C -0.05 -0.75 9.78 -39.16 -0.38 -1.14 16 19 C -0.21 -3.92 9.11 -39.49 -0.36 -4.28 16 20 C 0.16 3.39 6.67 -38.84 -0.26 3.13 16 21 O -0.19 -4.71 8.36 -14.31 -0.12 -4.83 16 22 C -0.39 -10.22 9.90 30.87 0.31 -9.92 16 23 H 0.11 2.91 5.50 -52.48 -0.29 2.62 16 24 C 0.07 1.80 5.49 -17.52 -0.10 1.70 16 25 N -0.86 -23.40 13.96 55.48 0.77 -22.62 16 26 Si 0.90 20.95 28.62 -169.99 -4.86 16.08 16 27 H -0.27 -6.18 7.11 56.52 0.40 -5.78 16 28 H -0.28 -6.21 7.11 56.52 0.40 -5.80 16 29 H -0.25 -6.04 7.11 56.52 0.40 -5.64 16 30 H 0.05 0.75 7.65 -51.93 -0.40 0.36 16 31 H 0.05 0.64 7.67 -51.93 -0.40 0.24 16 32 H 0.10 1.23 8.14 -51.93 -0.42 0.80 16 33 H 0.13 2.03 3.92 -52.49 -0.21 1.82 16 34 H 0.18 1.27 8.06 -52.49 -0.42 0.84 16 35 H 0.41 6.13 5.60 -182.59 -1.02 5.11 16 36 H 0.42 4.22 7.85 -40.82 -0.32 3.89 16 37 H 0.14 1.97 6.07 -52.49 -0.32 1.65 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.12 0.76 8.06 -52.49 -0.42 0.34 16 40 H 0.12 0.74 8.06 -52.48 -0.42 0.31 16 41 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 42 H 0.12 1.39 8.06 -52.49 -0.42 0.97 16 43 H 0.15 2.84 5.68 -52.49 -0.30 2.54 16 44 H 0.28 7.12 8.31 -40.82 -0.34 6.78 16 LS Contribution 376.63 15.07 5.68 5.68 Total: -1.00 -30.47 376.63 -8.04 -38.51 By element: Atomic # 1 Polarization: 17.51 SS G_CDS: -5.35 Total: 12.17 kcal Atomic # 6 Polarization: -5.42 SS G_CDS: -4.27 Total: -9.69 kcal Atomic # 7 Polarization: -43.00 SS G_CDS: 1.16 Total: -41.84 kcal Atomic # 8 Polarization: -20.51 SS G_CDS: -0.39 Total: -20.91 kcal Atomic # 14 Polarization: 20.95 SS G_CDS: -4.86 Total: 16.08 kcal Total LS contribution 5.68 Total: 5.68 kcal Total: -30.47 -8.04 -38.51 kcal The number of atoms in the molecule is 44 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000136959858.mol2 44 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.329 kcal (2) G-P(sol) polarization free energy of solvation -30.470 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 37.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.039 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.509 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.92 seconds